Royal Netherlands Institute for Sea Research

Department of Marine Microbiology & Biogeochemistry

Studying the microorganisms and biogeochemical processes of marine environments

The MMB Department studies microbial communities in all types of marine environments, from estuaries to the deep ocean, from the deep past to the present. Using field and experimental approaches and a variety of analytical, (bio)chemical and genomic techniques, we study the diversity, evolution, physiology and activity of eukaryotes, prokaryotes and viruses in diverse marine environmental settings. We do so by a variety of analytical chemical, biochemical and modern genomic techniques.

News and updates

Friday 12 July 2024
High and low tide cause low and high methane fluxes
Methane, a strong greenhouse gas that naturally escapes from the bottom of the North Sea, is affected by the pressure of high or low tide. Methane emissions from the seafloor can be just easily three times as much or as little, depending on the tide.…
Friday 12 July 2024
Genetic insights shed light on shiny bacteria
Some bacteria form colonies that display striking, reflective colours. An international, interdisciplinary team with NIOZ researchers Henk Bolhuis and Bastiaan von Meijenfeldt, gained new genetic insights into the formation of such colours which…
Friday 21 June 2024
CO2 puts heavier stamp on temperature than thought
A doubling of the amount of CO2 in the atmosphere could cause an increase in the average temperature on earth from 7 to even a maximum of 14 degrees. That is shown in the analysis of sediments from the Pacific Ocean off the coast of California, by…


Biogeochemistry Reconstructing environmental parameters from the geological past to the present, based on organic molecules produced by microorganisms. This provides information to improve predictions on future oceans and climate.
Microbiology Studing microbial eukaryotes, prokaryotes and their viruses while characterizing their diversity, physiology, metabolism, and biogeochemical activity across a variety of marine habitats. This is done by laboratory experiments and field surveys.
Molecular Ecology and Evolution Determining the diversity, gene regulation, microbial interactions and evolution of marine microorganisms. Research in this field is supported by work in the molecular laboratory and with computational approaches.


Villanueva, Laura
Head of Scientific Department
Amaral - Zettler, Linda
Research Leader
Bale, Nicole
Head of Analytical Laboratory
Bleijswijk Tierens Verhagen van, Judith
Head of Analytical Laboratory
Bolhuis, Henk
Senior Scientist
Brussaard, Corina
Senior Research Leader
Engelmann, Julia
Senior Scientist
Haas, Andi
Senior Scientist
Hopmans, Ellen
Head of Analytical Laboratory
Meer van der, Marcel
Senior Scientist
Niemann, Helge
Research Leader
Offre, Pierre
Senior Scientist
Rush, Darci
Senior Scientist
Schouten, Stefan
Senior Research Leader
Sinninghe Damsté, Jaap
Senior Research Leader
Spang, Anja
Research Leader
Barnes, Will
PhD student
Boer, Meine
PhD student
Corbett, Lia
PhD student
Delre, Annalisa
PhD student
Goodman, Jamie
PhD student
Huang, Wencong
PhD student
Hättig, Katrin
PhD student
Novik, Olga
PhD student
Sadeghi, Salima
Visiting PhD
Schellenberg, Lisa
PhD student
Tamby, Anandi
PhD student
Öztoprak, Merve
PhD student
Abdala Asbun, Alejandro
Senior Research Assistant
Beer de, Rob
Research Assistant
Bommel van, Ronald
Research Assistant
Brouwer, Maartje
Senior Research Assistant
Dorhout, Denise
Senior Research Assistant
Garritsen - van Arnhem, Eveline
Research Assistant
Koenen, Michel
Research Assistant
Lamers, Alma
Laboratory Assistant
Mets, Anchelique
Senior Laboratory Assistant
Ndhlovu, Rachel
Research Assistant
Noordeloos, Anna
Senior Research Assistant
Ossebaar, Jort
Senior Research Assistant
Peters, Laura
Management Assistant
Pont, Sven
Research Assistant
Posthuma, Ilsa
Research Assistant
Reitsma, Wietse
Research Assistant
Verweij, Monique
Senior Research Assistant
Vreugdenhil, Sanne
Research Assistant
Witte, Harry
Senior Research Assistant
Claveaux, Jona
Duyl van, Fleur
Guest researcher
Theirlynck, Tom
Guest researcher
Zeghal, Emna
Guest researcher

Linked Projects

UUNIOZ_The origin and diversification of eukaryotic metabolisms
Anja Spang
Utrecht University
Project duration
1 Jan 2021 - 31 Dec 2025
UUNIOZ_Using isotopic indicators
Marcel van der Meer
Utrecht University
Project duration
1 Jan 2021 - 31 Dec 2025
UUNIOZ_Nanoplastics pollution in the Ocean
Helge Niemann
Utrecht University
Project duration
1 Jan 2021 - 31 Dec 2025
UUNIOZ_Turning the tide
Andi Haas
Utrecht University
Project duration
1 Jan 2021 - 31 Dec 2025

Linked publications

  • 2024
    Egas, R.A.; Sahonero Canavesi, D.; Bale, N.J.; Koenen, M.; Yildiz, C.; Villanueva, L.; Sousa, D.Z.; Sánchez-Andrea, I. (2024). Acetic acid stress response of the acidophilic sulfate reducer Acididesulfobacillus acetoxydans. Environ. Microbiol. 26(2): e16565.
    Ersoy, S.; Beardsworth, C.E; Duran, E.; van der Meer, M.T.J.; Piersma, T.; Groothuis, T.G.G.; Bijleveld, A. (2024). Pathway for personality development: juvenile red knots vary more in diet and exploratory behaviour than adults. Anim. Behav. 208: 31-40.
    Orel, N.; Fadeev, E.; Herndl, G.J.; Turk, V.; Tinta, T. (2024). Recovering high-quality bacterial genomes from cross-contaminated cultures: a case study of marine Vibrio campbellii. BMC Genom. 25(1).
    Salazar Alekseyeva, K.; Herndl, G.; Baltar, F. (2024). Influence of salinity on the extracellular enzymatic activities of marine pelagic fungi. Journal of Fungi 10(2): 152.
    Read more
    Sparagon, W.J.; Arts, M.G.I.; Quinlan, Z.A.; Wegley Kelly, L.; Koester, I.; Comstock, J.; Bullington, J.A.; Carlson, C.A.; Dorrestein, P.C.; Aluwihare, L.I.; Haas, A.F.; Nelson, C.E. (2024). Coral thermal stress and bleaching enrich and restructure reef microbial communities via altered organic matter exudation. Communications Biology 7(1): 160.
    Zhang, X.; Wang, Y.; Wang, Z.; Zhao, M.; Fang, Y.; Ding, S.; Xiao, W.; Yu, C.; Wang, X.; Xu, Y. (2024). Heterogenous distribution and burial flux of black carbon in Chinese lakes and its global implication. Sci. Total Environ. 906: 167687.
  • 2023
    Aylward, F.O.; Abrahão, J.S.; Brussaard, C.P.D.; Fischer, M.G.; Moniruzzaman, M.; Ogata, H.; Suttle, C.A. (2023). Taxonomic update for giant viruses in the order Imitervirales (phylum Nucleocytoviricota). Archives of Virology 168(11): 283.
    Baer, J.L.; Carilli, J.; Chadwick, B.; Hatay, M.; van der Geer, A.; Scholten, Y.; Barnes, W.; Aquino, J.; Ballard, A.; Little, M.; Brzenski, J.; Liu, X.; Rosen, G.; Wang, P.-F.; Castillo, J.; Haas, A.F.; Hartmann, A.C.; Rohwer, F. (2023). Coral reef arks: An In Situ mesocosm and toolkit for assembling reef communities. Jove-Journal of Visualized Experiments 191: e64778.
    Baltar, F.; Martínez-Pérez, C.; Amano, C.; Vial, M.; Robaina-Estévez, S.; Reinthaler, T.; Herndl, G.; Zhao, Z.; Logares, R.; Morales, S.E.; González, J.M. (2023). A ubiquitous gammaproteobacterial clade dominates expression of sulfur oxidation genes across the mesopelagic ocean. Nature Microbiology 8(6): 1137-1148.
    Baxter, A.J.; Verschuren, D.; Peterse, F.; Miralles, D.G.; Martin-Jones, C.M.; Maitituerdi, A.; Van der Meeren, T.; Van Daele, M.; Lane, C.S.; Haug, G.H.; Olago, D.O.; Sinninghe Damsté, J.S. (2023). Reversed Holocene temperature–moisture relationship in the Horn of Africa. Nature (Lond.) 620(7973): 336-343.
    Beltran, L.C.; Cvirkaite-Krupovic, V.; Miller, J.; Wang, F.; Kreutzberger, M.A.B.; Patkowski, J.B.; Costa, T.R.D.; Schouten, S.; Levental, I.; Conticello, V.P.; Egelman, E.H.; Krupovica, M. (2023). Archaeal DNA-import apparatus is homologous to bacterial conjugation machinery. Nature Comm. 14: 666.
    Beyazay, T.; Belthle, K.S.; Farès, C.; Preiner, M.; Moran, J.; Martin, W.F.; Tüysüz, H. (2023). Ambient temperature CO2 fixation to pyruvate and subsequently to citramalate over iron and nickel nanoparticles. Nature Comm. 14: 570.
    Born-Torrijos, A.; Riekenberg, P.M.; van der Meer, M.T.J.; Nachev, M.; Sures, B.; Thieltges, D.W. (2023). Parasite effects on host’s trophic and isotopic niches. Trends Parasitol. 39(9): 749-759.
    Bos, R.P.; Kaul, D.; Zettler, E.R.; Hoffman, J.M.; Dupont, C.L.; Amaral-Zettler, L.; Mincer, T.J. (2023). Plastics select for distinct early colonizing microbial populations with reproducible traits across environmental gradients. Environ. Microbiol. 25(12): 2761-2775.
    Candy, A.S.; Taylor Parkins, S.K.; van Duyl, F.C.; Mueller, B.; Arts, M.G.I.; Barnes, W.; Carstensen, M.; Scholten, Y.; El-Khaled, Y.C.; Wild, C.; Wegley Kelly, L.; Nelson, C.E.; Sandin, S.A.; Vermeij, M.J.A.; Rohwer, F.; Picioreanu, C.; Stocchi, P.; Haas, A.F. (2023). Small-scale oxygen distribution patterns in a coral reef. Front. Mar. Sci. 10.
    Chaouni, B.; Idrissi Azami, A.; Raoui, S.; Amzazi, S.; Nejjari, C.; Bakkali, F.; Zaid, E.H.; Hamamouch, N.; Amaral-Zettler, L.A.; Ghazal, H. (2023). Spatio-temporal patterns of Synechococcus oligotypes in Moroccan lagoonal environments. NPG Scientific Reports 13(1).
    Cutmore, A.; Bale, N.; de Lange, G.J.; Nijenhuis, I. A.; Lourens, L.J. (2023). A Window Into Eastern Mediterranean Productivity Conditions Over Three Pliocene Precession‐Forced Climate Cycles. Paleoceanography and Paleoclimatology 38(4).
    de Groot, T.; Mol, A.M.; Mesdag, K.I.; Ramond, P.; Ndhlovu, R.T.; Engelmann, J.C.; Röckmann, T.; Niemann, H. (2023). Diel and seasonal methane dynamics in the shallow and turbulent Wadden Sea. Biogeosciences 20(18): 3857-3872.
    Debeljak, P.; Bayer, B.; Sun, Y.; Herndl, G.J.; Obernosterer, I. (2023). Seasonal patterns in microbial carbon and iron transporter expression in the Southern Ocean. Microbiome 11(1): 187.
    Delre, A.; Goudriaan, M.; Hernando-Morales, V.; Vaksmaa, A.; Ndhlovu, R.T.; Baas, M.; Keijzer, E.; de Groot, T.; Zeghal, E.; Egger, M.; Röckmann, T.; Niemann, H. (2023). Plastic photodegradation under simulated marine conditions. Mar. Pollut. Bull. 187: 114544.
    Donoghue, P.C.J.; Kay, C.; Spang, A.; Szöllosi, G.J.; Nenarokova, A.; Moody, E.R.R.; Pisani, D.; Williams, T.A. (2023). Defining eukaryotes to dissect eukaryogenesis. Curr. Biol. 33(17): R919-R929.
    Druce, E.; Grego, M.; Bolhuis, H.; Johnes, P.J.; Sánchez-Baracaldo, P. (2023). Draft Genome Sequences of Synechococcus sp. strains CCAP1479/9, CCAP1479/10, CCAP1479/13, CCY0621, and CCY9618: Five Freshwater Syn/Pro Clade Picocyanobacteria. Journal of Genomics 11: 26-36.
    Eme, Laura; Tamarit, Daniel; Caceres, Eva F.; Stairs, Courtney W.; De Anda, Valerie; Schön, Max E.; Seitz, Kiley W.; Dombrowski, Nina; Lewis, William H.; Homa, Felix; Saw, Jimmy H.; Lombard, Jonathan; Nunoura, Takuro; Li, Wen-Jun; Hua, Zheng-Shuang; Chen, Lin-Xing; Banfield, Jillian F.; John, Emily St; Reysenbach, Anna-Louise; Stott, Matthew B.; Schramm, Andreas; Kjeldsen, Kasper U.; Teske, Andreas P.; Baker, Brett J.; Ettema, Thijs J. G. (2023). Inference and reconstruction of the heimdallarchaeial ancestry of eukaryotes. Nature (Lond.) 618(7967): 992-999.
    Fry, B.; O’Mara, K.; Riekenberg, P.M.; Wassenaar, L.I.; Cormier, N. (2023). Flexitraits, natural chemical tracers of plant competition and productivity in Pacific mangroves. Wetlands 43(4).
    Goudriaan, M.; Hernando-Morales, V.; van der Meer, M.T.J.; Mets, A.; Ndhlovu, R.; van Heerwaarden, J.; Simon, S.; Heuer, V.B.; Hinrichs, K.-U.; Niemann, H. (2023). A stable isotope assay with 13C-labeled polyethylene to investigate plastic mineralization mediated by Rhodococcus ruber. Mar. Pollut. Bull. 186: 114369.
    Hakimzadeh, A.; Abdala Asbun, A.; Albanese, D.; Bernard, M.; Buchner, D.; Callahan, B.; Caporaso, J. G.; Curd, E.; Djemiel, C.; Brandström Durling, M.; Elbrecht, V.; Gold, Z.; Gweon, H. S.; Hajibabaei, M.; Hildebrand, F.; Mikryukov, V.; Normandeau, E.; Özkurt, E.; M. Palmer, J.; Pascal, G.; Porter, T. M.; Straub, D.; Vasar, M.; Větrovský, T.; Zafeiropoulos, H.; Anslan, S. (2023). A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses. Mol. Ecol. Resour. Early View.
    Hättig, K.; Varma, D.; Schouten, S.; van der Meer, M.T.J. (2023). Glacial–interglacial seawater isotope change near the Chilean Margin as reflected by δ2H values of C37 alkenones. Clim. Past 19(10): 1919-1930.
    Hoshino, Y.; Villanueva, L. (2023). Four billion years of microbial terpenome evolution. FEMS Microbiol. Rev. 47(2): 1-39.
    Liang, J.; Richter, N.; Xie, H.; Zhao, B.; Si, G.; Wang, J.; Hou, J.; Zhang, G.; Russell, J.M. (2023). Branched glycerol dialkyl glycerol tetraether (brGDGT) distributions influenced by bacterial community composition in various vegetation soils on the Tibetan Plateau. Palaeogeogr. Palaeoclimatol. Palaeoecol. 611: 111358.
    Mahendrarajah, T.A.; Moody, E.R.R.; Schrempf, D.; Szánthó, L.L.; Dombrowski, N.; Davín, A.A.; Pisani, D.; Donoghue, P.C.J.; Szöllosi, G.J.; Williams, T.A.; Spang, A. (2023). ATP synthase evolution on a cross-braced dated tree of life. Nature Comm. 14(1): 7456.
    Manral, D.; Iovino, D.; Jaillon, O.; Masina, S.; Sarmento, H.; Iudicone, D.; Amaral-Zettler, L.; van Sebille, E. (2023). Computing marine plankton connectivity under thermal constraints. Front. Mar. Sci. 10: 1066050.
    Mincer, T.J. ; Bos, R.P.; Zettler, E.R.; Zhao, S.; Abdala Asbun, A.; Orsi, W.D.; Guzzetta, V.S.; Amaral-Zettler, L. (2023). Sargasso Sea Vibrio bacteria: Underexplored potential pathovars in a perturbed habitat. Wat. Res. 242: 120033.
    Mitrovic, D.; Hopmans, E.C.; Bale, N.J.; Richter, N.; Amaral-Zettler, L.; Baxter, A.J.; Peterse, F; Miguel Raposeiro, P.; Gonçalves, V.; Cristina Costa, A.; Schouten, S. (2023). Isoprenoidal GDGTs and GDDs associated with anoxic lacustrine environments. Org. Geochem. 178: 104582.
    Molari, M.; Hassenrueck, C.; Laso-Pérez, R.; Wegener, G.; Offre, P.; Scilipoti, S.; Boetius, A. (2023). A hydrogenotrophic Sulfurimonas is globally abundant in deep-sea oxygen-saturated hydrothermal plumes. Nature Microbiology 8(4): 651-665.
    Neubauer, C.; Kantnerová, K.; Lamothe, A.; Savarino, J.; Hilkert, A.; Juchelka, D.; Hinrichs, K.-U.; Elvert, M.; Heuer, V.B.; Elsner, M.; Bakkour, R.; Julien, M.; Öztoprak, M.; Schouten, S.; Hattori, S.; Dittmar, T. (2023). Discovering nature’s fingerprints: isotope ratio analysis on bioanalytical mass spectrometers. Journal of the American Society for Mass Spectrometry 34(4): 525-537.
    Oortwijn, T.; de Monte, L.; Varley, D.P.; van der Meer, M.T.J.; van Gils, J.A. (2023). Tissue‐ and diet‐dependent stable carbon and nitrogen isotope discrimination: a calibration study in a captive shorebird species. J. Avian Biol. 2023(9-10): e03094.
    Ortmann, A.C.; Goodwin, K.D.; Bolhuis, H.; Groben, R.; Makhalanyane, T.P.; Bowman, J.; Robinson, S.; Thompson, F. (2023). Catalyzing progress in the blue economy through joint marine microbiome research across the Atlantic. Front. Mar. Sci. 10: 1327719.
    Pérez Gallego, R.; Bale, N.J.; Sinninghe Damsté, J.S; Villanueva, L. (2023). Developing a genetic approach to target cyanobacterial producers of heterocyte glycolipids in the environment. Front. Microbiol. 14: 1257040.
    Pérez Gallego, R.; Bale, N.J.; Sinninghe Damsté, J.S; Villanueva, L. (2023). Developing a genetic approach to target cyanobacterial producers of heterocyte glycolipids in the environment. Front. Microbiol. 14: 1257040.
    Pérez Gallego, R.; Bale, N.J.; Sinninghe Damsté, J.S; Villanueva, L. (2023). Developing a genetic approach to target cyanobacterial producers of heterocyte glycolipids in the environment. Front. Microbiol. 14: 1257040.
    Poiesz, S.S.H.; Witte, J.IJ.; van der Meer, M.T.J.; de Jager, C.; Soetaert, K.; van der Heide, T.; van der Veer, H.W. (2023). Stomach content and stable isotopes illustrate large spatial similarity in the Wadden Sea fish food-web structure. Mar. Ecol. Prog. Ser. 707: 57-76.
    Quinlan, Z.A.; Bennett, M.-J.; Arts, M.G.I.; Levenstein, M.A.; Flores, D.; Tholen, H.M.; Tichy, L.; Juarez, G.; Haas, A.F.; Chamberland, V.F.; Latijnhouwers, K.R.W.; Vermeij, M.J.A.; Johnson, A.W.; Marhaver, K.L.; Kelly, L.W. (2023). Coral larval settlement induction using tissue-associated and exuded coralline algae metabolites and the identification of putative chemical cues. Proc. - Royal Soc., Biol. Sci. 290(2009).
    Richter, N.; Hopmans, E.C.; Mitrovic, D.; Miguel Raposeiro, P.; Gonçalves, V.; Costa, A.C.; Amaral-Zettler, L.; Villanueva, L.; Rush, D. (2023). Distributions of bacteriohopanepolyols in lakes and coastal lagoons of the Azores Archipelago. Biogeosciences 20(11): 2065-2098.
    Roitman, S.; Rozenberg, A.; Lavy, T.; Brussaard, C.P.D.; Kleifeld, O.; Béjà, O. (2023). Isolation and infection cycle of a polinton-like virus virophage in an abundant marine alga. Nature Microbiology 8(2): 332-346.
    Salazar Alekseyeva, K.; Herndl, G.; Baltar, F. (2023). Release of cell-free enzymes by marine pelagic fungal strains. Fungal Biol. 4: 1209265.
    Santana-Molina, C.; del Saz-Navarro, D.; Devos, D.P. (2023). Early origin and evolution of the FtsZ/tubulin protein family. Front. Microbiol. 13: 1100249.
    Schwartz-Narbonne, R.; Schaeffer, P.; Lengger, S.K.; Blewett, J.; Martin Jones, D.; Motsch, E.; Crombie, A.; Jetten, M.S.M.; Mikkelsen, D.; Normand, P.; Nuijten, G.H.L.; Pancost, R.D.; Rush, D. (2023). Bacterial physiology highlighted by the δ13C fractionation of bacteriohopanetetrol isomers. Org. Geochem. 181: 104617.
    Sert, M.F.; Schweitzer, H.D.; de Groot, T.; Kekäläinen, T.; Jänis, J.; Bernstein, H.C.; Ferré, B.; Gründger, F.; Kalenitchenko, D.; Niemann, H. (2023). Elevated methane alters dissolved organic matter composition in the Arctic Ocean cold seeps. Front. Earth Sci. (Print) 11: 1290882.
    Sinninghe Damsté, J.S; Rijpstra, W.I.C.; Huber, K.J.; Albuquerque, L.; Egas, C.; Bale, N. (2023). Dominance of mixed ether/ester, intact polar membrane lipids in five species of the order Rubrobacterales: Another group of bacteria not obeying the “lipid divide”. Syst. Appl. Microbiol. 46(2): 126404.
    Sliwinska, K.K.; Coxall, H.K.; Hutchinson, D.K.; Liebrand, D.; Schouten, S.; de Boer, A.M. (2023). Sea surface temperature evolution of the North Atlantic Ocean across the Eocene–Oligocene transition. Clim. Past 19(1): 123-140.
    Sorokin, D.Y.; Elcheninov, A.G.; Merkel, A.Y.; Bale, N.; Sinninghe Damste, J.S.; Kublanov, I.V. (2023). Halapricum hydrolyticum sp. nov., a beta-1,3-glucan utilizing haloarchaeon from hypersaline lakes. Syst. Appl. Microbiol. 46(6): 126471.
    Spang, A. (2023). Uncovering the hidden world of nanosized archaea. Nat. Rev., Microbiol. 21(10): 638-638.
    Srivastava, A.; De Corte, D.; Garcia, J.A.L.; Swan, B.K.; Stepanauskas, R.; Herndl, G.; Sintes, E. (2023). Interplay between autotrophic and heterotrophic prokaryotic metabolism in the bathypelagic realm revealed by metatranscriptomic analyses. Environmental Microbiome 11(1): 239.
    Su, G.; Lehmann, M.F.; Tischer, J.; Weber, Y.; Lepori, F.; Walser, J.-C.; Niemann, H.; Zopfi, J. (2023). Water column dynamics control nitrite-dependent anaerobic methane oxidation by Candidatus “Methylomirabilis” in stratified lake basins. ISME J. 17(5): 693-702.
    Tamby, A.; Sinninghe Damsté, J.S; Villanueva, L. (2023). Microbial membrane lipid adaptations to high hydrostatic pressure in the marine environment. Front. Mol. Biosci. 9: 1058381.
    Theirlynck, T.; Mendonça, I.R.W.; Engelen, A.H.; Bolhuis, H.; Collado-Vides, L.; van Tussenbroek, B.I.; García-Sánchez, M.; Zettler, E.R.; Muyzer, G.; Amaral-Zettler, L. (2023). Diversity of the holopelagic Sargassum microbiome from the Great Atlantic Sargassum Belt to coastal stranding locations. Harmful Algae 122: 102369.
    Tian, H.-A.; van Manen, M.; Wille, F.; Jung, J.; Lee, S.H.; Kim, T.-W.; Aoki, S.; Eich, C.; Brussaard, C.P.D.; Reichart, G.-J.; Conway, T.M.; Middag, R. (2023). The biogeochemistry of zinc and cadmium in the Amundsen Sea, coastal Antarctica. Mar. Chem. 249: 104223.
    Tinta, T.; Zhao, Z.; Bayer, B.; Herndl, G. (2023). Jellyfish detritus supports niche partitioning and metabolic interactions among pelagic marine bacteria. Environmental Microbiome 11(1).
    Toucanne, S.; Rodrigues, T.; Menot, G.; Soulet, G.; Cheron, S.; Billy, I.; Eynaud, F.; Antoine, P.; Sinninghe Damsté, J.S.; Bard, E.; Sanchez Goñi, M.F. (2023). Marine isotope stage 4 (71–57 ka) on the Western European margin: Insights to the drainage and dynamics of the Western European ice sheet. Global Planet. Change 229: 104221.
    Vaksmaa, A.; Adessi, A.; Sala, M.M.; Buchan, A.; Magalhães, C.; Jones, A.C. (2023). Editorial: Women in aquatic microbiology: 2022. Front. Microbiol. 14.
    Vaksmaa, A.; Guerrero-Cruz, S.; Ghosh, P.; Zeghal, E.; Hernando-Morales, V.; Niemann, H. (2023). Role of fungi in bioremediation of emerging pollutants. Front. Mar. Sci. 10: 1070905.
    Vaksmaa, A.; Polerecky, L.; Dombrowski, N.; Kienhuis, M.V.M.; Posthuma, I.; Gerritse, J.; Boekhout, T.; Niemann, H. (2023). Polyethylene degradation and assimilation by the marine yeast Rhodotorula mucilaginosa. ISME Commun. 3(1): 68.
    van der Gulik, P.T.S.; Egas, M.; Kraaijeveld, K.; Dombrowski, N.; Groot, A.T.; Spang, A.; Hoff, W.D.; Gallie, J. (2023). On distinguishing between canonical tRNA genes and tRNA gene fragments in prokaryotes. Rna Biology 20: 48-58.
    van Duyl, F.C.; van Bleijswijk, J.D.L.; Wuchter, C.; Witte, H.J.; Coolen, M.J.L.; Bak, R.P.M.; Engelmann, J.C.; Nugues, M.M. (2023). Recovery patterns of the coral microbiome after relief of algal contact. J. Sea Res. 191: 102309.
    van Kemenade, Z.R.; Cutmore, A.; Hennekam, R.; Hopmans, E.C.; van der Meer, M.T.J.; Mojtahid, M.; Jorissen, F.; Bale, N.; Reichart, G.-J.; Sinninghe Damsté, J.S; Rush, D. (2023). Marine nitrogen cycling dynamics under altering redox conditions: Insights from deposition of sapropels S1 and the ambiguous S2 in the Eastern Mediterranean Sea. Geochim. Cosmochim. Acta 354: 197-210.
    Varma, D.; Hättig, K.; van der Meer, M.T.J.; Reichart, G.-J.; Schouten, S. (2023). Constraining water depth influence on organic paleotemperature proxies using sedimentary archives. Paleoceanography and Paleoclimatology 38(6).
    Wetzel, A.; Niemann, H. (2023). Authigenic‐cemented pebbles formed during Pleisto–Holocene transgression of gently inclined coastal plains. Sedimentology 71(2): 486-508.
    Williams, T.A.; Davín, A.A.; Morel, B.; Szánthó, L.L.; Spang, A.; Stamatakis, A.; Hugenholtz, P.; Szöllosi, G.J. (2023). Parameter Estimation and Species Tree Rooting Using ALE and GeneRax. Genome Biology and Evolution 15(7).
    Wu, L.-Y.; Piedade, G.; Moore, R.M.; Harrison, A.O.; Martins, A.M.; Bidle, K.D.; Polson, S.W.; Sakowski, E.G.; Nissimov, J.I.; Dums, J.T.; Ferrell, B.D.; Wommack, K.E. (2023). Ubiquitous, B12-dependent virioplankton utilizing ribonucleotide-triphosphate reductase demonstrate interseasonal dynamics and associate with a diverse range of bacterial hosts in the pelagic ocean. ISME Commun. 3(1).
    Yedema, Y.W.; Sangiorgi, F.; Sluijs, A.; Sinninghe Damsté, J.S.; Peterse, F (2023). The dispersal of fluvially discharged and marine, shelf-produced particulate organic matter in the northern Gulf of Mexico. Biogeosciences 20(3): 663-686.
  • 2022
    Aichner, B.; Wünnemann, B.; Callegaro, A.; van der Meer, M.T.J.; Yan, D.; Zhang, Y.; Barbante, C.; Sachse, D. (2022). Asynchronous responses of aquatic ecosystems to hydroclimatic forcing on the Tibetan Plateau. Commun. Earth Environ. 3: 3.
    Al-Suwaidi, A.H.; Ruhl, M.; Jenkyns, H.C.; Damborenea, S.E.; Manceñido, M.O.; Condon, D.J.; Angelozzi, G.N.; Kamo, S.L.; Storm, M.; Riccardi, A.C.; Hesselbo, S.P. (2022). New age constraints on the Lower Jurassic Pliensbachian–Toarcian Boundary at Chacay Melehue (Neuquén Basin, Argentina). NPG Scientific Reports 12: 4975.
    Albers, S.; Ashmore, J.; Pollard, T.; Spang, A.; Zhou, J. (2022). Origin of eukaryotes: What can be learned from the first successfully isolated Asgard archaeon. Faculty reviews 11.
    Amano, C.; Reinthaler, T.; Sintes, E.; Varela, M.M.; Stefanschitz, J.; Kaneko, S.; Nakano, Y.; Borchert, W.; Herndl, G.J.; Utsumi, M. (2023). A device for assessing microbial activity under ambient hydrostatic pressure: The in situ microbial incubator (ISMI). Limnol. Oceanogr., Methods 21(2): 69-81.
    Amano, C.; Zhao, Z.; Sintes, E.; Reinthaler, T.; Stefanschitz, J.; Kisadur, M.; Utsumi, M.; Herndl, G.J. (2022). Limited carbon cycling due to high-pressure effects on the deep-sea microbiome. Nature Geoscience 15(12): 1041-1047.
    Amaral-Zettler, L.A. (2022). Colonization of plastic marine debris: The known, the unknown, and the unknowable, in: Andrady, A.L. (Ed.) Plastics and the Ocean: Origin, characterization, fate, and impacts. pp. 301-316.
    Balzano, S.; Sardo, A. (2022). Bioinformatic prediction of putative metallothioneins in non-ciliate protists. Biol. Lett. 18(4).
    Barra, L.; Sardo, A.; Caballero, M.M.; Smerilli, A.; Chiaiese, P.; Percopo, I.; Cavalletti, E.; Castro-Hinojosa, C.; Balzano, S. (2022). Identification of a green algal strain collected from the Sarno River Mouth (Gulf of Naples, Italy) and its exploitation for heavy metal remediation. Microorganisms 10(12): 2445.
    Beijer, N.R.M.; Dehaut, A.; Carlier, M.P.; Wolter, H.; Versteegen, R.M.; Pennings, J.L.A.; de la Fonteyne, L.; Niemann, H.; Janssen, H.M.; Timmermans, B.G.; Mennes, W.; Cassee, F.R.; Mengelers, M.J.B.; Amaral-Zettler, L.A.; Duflos, G.; Staal, Y.C.M. (2022). Relationship between particle properties and immunotoxicological effects of environmentally-sourced microplastics. Frontiers in water 4: 866732.
    Biggs, T.E.G.; Rozema, P.D.; Evans, C.; Timmermans, K.R.; Meredith, M.P.; Pond, D.W.; Brussaard, C.P.D. (2022). Control of Antarctic phytoplankton community composition and standing stock by light availability. Polar Biol. 45(11): 1635-1653.
    Breyer, E.; Zhao, Z.; Herndl, G.J.; Baltar, F. (2022). Global contribution of pelagic fungi to protein degradation in the ocean. Microbiome 10(1): 143.
    Butiseaca, G.A.; van der Meer, M.T.J.; Kontakiotis, G.; Agiadi, K.; Thivaiou, D.; Besiou, E.; Antonarakou, A.; Mulch, A.; Vasiliev, I. (2022). Multiple crises preceded the Mediterranean Salinity Crisis: Aridification and vegetation changes revealed by biomarkers and stable isotopes. Global Planet. Change 217: 103951.
    Cavalletti, E.; Romano, G.; Palma Esposito, F.; Barra, L.; Chiaiese, P.; Balzano, S.; Sardo, A. (2022). Copper effect on microalgae: Toxicity and bioremediation strategies. Toxics 10(9): 527.
    Chaouni, B.; Idrissi Azami, A.; Essayeh, S.; Arrafiqui, E. H.; Bailal, A.; Raoui, S.; Amzazi, S.; Twaddle, A.; El Hamouti, C.; Boukhatem, N.; Timinouni, M.; El Otmani, F.; Chahboune, R.; Barrijal, S.; El Homani, A.; Nejjari, C.; Zaid, E. H.; Hamamouch, N.; Bakkali, F.; Amaral-Zettler, L.; Ghazal, H. (2022). Moroccan lagoon microbiomes. Water 14(11): 1715.
    Cipolloni, O.-A.; Gigault, J.; Dassié, É.P.; Baudrimont, M.; Gourves, P.-Y.; Amaral-Zettler, L.; Pascal, P.-Y. (2022). Metals and metalloids concentrations in three genotypes of pelagic Sargassum from the Atlantic Ocean Basin-scale. Mar. Pollut. Bull. 178: 113564.
    Corbett, L.N.; Amaral-Zettler, L.A. (2022). Nanoplastics and the marine environment: The unseen majority?, in: Andrady, A.L. (Ed.) Plastics and the Ocean: Origin, characterization, fate, and impacts. pp. 389-428.
    Cutmore, A.; Ausín, B.; Maslin, M.; Eglinton, T.; Hodell, D.; Muschitiello, F.; Menviel, L.; Haghipour, N.; Martrat, B.; Margari, V.; Tzedakis, P.C. (2022). Abrupt intrinsic and extrinsic responses of southwestern Iberian vegetation to millennial‐scale variability over the past 28 ka. J. Quaternary Sci. 37(3): 420-440.
    Ding, S.; Henkel, J.V.; Hopmans, E.C.; Bale, N.J.; Koenen, M.; Villanueva, L.; Sinninghe Damsté, J.S. (2022). Changes in the membrane lipid composition of a Sulfurimonas species depend on the electron acceptor used for sulfur oxidation. ISME Commun. 2: 121.
    Egger, M.; Schilt, B.; Wolter, H.; Mani, T.; de Vries, R.; Zettler, E.R.; Niemann, H. (2022). Pelagic distribution of plastic debris (> 500 µm) and marine organisms in the upper layer of the North Atlantic Ocean. NPG Scientific Reports 12(1): 13465.
    Eich, C.; Biggs, T.E.G.; van de Poll, W.H.; van Manen, M.H.; Tian, H.-A.; Jung, J.; Lee, Y.; Middag, R.; Brussaard, C.P.D. (2022). Ecological importance of viral lysis as a loss factor of phytoplankton in the Amundsen Sea. Microorganisms 10(10): 1967.
    Ersoy, S.; Beardsworth, C.E.; Dekinga, A.; van der Meer, M.T.J.; Piersma, T.; Groothuis, T.G.G.; Bijleveld, A.I. (2022). Exploration speed in captivity predicts foraging tactics and diet in free‐living red knots. J. Anim. Ecol. 91(2): 356-366.
    Fischer, R.; Lobelle, D.; Kooi, M.; Koelmans, A.; Onink, V.; Laufkötter, C.; Amaral-Zettler, L.; Yool, A.; van Sebille, E. (2022). Modelling submerged biofouled microplastics and their vertical trajectories. Biogeosciences 19(8): 2211-2234.
    Franchi, O.; Toledo-Alarcón, J.; Campos, J.L.; Jeison Nuñez, D.; Vaksmaa, A.; Tapia-Venegas, E. (2022). Diversity of nitrogen-removing microorganisms, in: Shah, M.P. et al. Development in wastewater treatment research and processes. pp. 133-164.
    Garza, D.R.; von Meijenfeldt, F. A.B.; van Dijk, B.; Boleij, A.; Huynen, M.A.; Dutilh, B.E. (2022). Nutrition or nature: using elementary flux modes to disentangle the complex forces shaping prokaryote pan-genomes. BMC Ecology and Evolution 22(1).
    Gévaert, F.; Gontharet, S.; Bolhuis, H.; Gommeaux, M.; Duong, G.; Goulard, F.; Courcot, L.; Denis, L. (2022). Biofilm dynamics and production in a tropical intertidal mudflat in French Guiana. Reg. environ. Change 23: 2.
    Glock, N.; Erdem, Z.; Schönfeld, J. (2022). The Peruvian oxygen minimum zone was similar in extent but weaker during the Last Glacial Maximum than Late Holocene. Commun. Earth Environ. 3: 307.
    Hanz, U.; Riekenberg, P.M.; de Kluijver, A.; van der Meer, M.T.J.; Middelburg, J.J.; de Goeij, J.M.; Bart, M.C.; Wurz, E.; Colaço, A.; Duineveld, G.C.A.; Reichart, G.-J.; Rapp, H.T.; Mienis, F. (2022). The important role of sponges in carbon and nitrogen cycling in a deep‐sea biological hotspot. Funct. Ecol. 36(9): 2188-2199.
    Henriques Pereira, D.P.; Leethaus, J.; Beyazay, T.; Nascimento Vieira, A.; Kleinermanns, K.; Tüysüz, H.; Martin, W.F.; Preiner, M. (2022). Role of geochemical protoenzymes (geozymes) in primordial metabolism: specific abiotic hydride transfer by metals to the biological redox cofactor NAD+. The FEBS Journal 289(11): 3148-3162.
    Herndl, G.J.; Bayer, B.; Baltar, F.; Reinthaler, T. (2023). Prokaryotic life in the deep ocean's water column. Ann. Rev. Mar. Sci. 15: 461-483.
    Hester, E.R.; Vaksmaa, A.; Valè, G.; Monaco, S.; Jetten, M.S.M.; Lüke, C. (2022). Effect of water management on microbial diversity and composition in an Italian rice field system. FEMS Microbiol. Ecol. 98(3): fiac018.
    Hoorn, C.; Kukla, T.; Bogotá-Angel, G.; van Soelen, E.E.; González-Arango, C.; Wesselingh, F.P.; Vonhof, H.B.; Val, P.; Morcote-Rios, G.; Roddaz, M.; Dantas, E.L.; Santos, R.V.; Sinninghe Damsté, J.S.; Kim, J.-H.; Morley, R.J. (2022). Cyclic sediment deposition by orbital forcing in the Miocene wetland of western Amazonia? New insights from a multidisciplinary approach. Global Planet. Change 210: 103717.
    Humphreys, M.P.; Meesters, E.H.; de Haas, H.; Karancz, S.; Delaigue, L.; Bakker, K.; Duineveld, G.; de Goeyse, S.; Haas, A.F.; Mienis, F.; Ossebaar, S.; van Duyl, F.C. (2022). Dissolution of a submarine carbonate platform by a submerged lake of acidic seawater. Biogeosciences 19(2): 347-358.
    Kirkels, F.M.S.A.; de Boer, H.J.; Concha Hernández, P.; Martes, C.R.T.; van der Meer, M.T.J.; Basu, S.; Usman, M.O.; Peterse, F. (2022). Carbon isotopic ratios of modern C3 and C4 vegetation on the Indian peninsula and changes along the plant–soil–river continuum – implications for vegetation reconstructions. Biogeosciences 19(17): 4107-4127.
    Klunder, L.; van Bleijswijk, J.D.L.; Kleine Schaars, L.; van der Veer, H.W.; Luttikhuizen, P.C.; Bijleveld, A. (2022). Quantification of marine benthic communities with metabarcoding. Mol. Ecol. Resour. 22(3): 1043-1054.
    Koppelle, S.; López-Escardó, D.; Brussaard, C.P.D.; Huisman, J.; Philippart, C.J.M.; Massana, R.; Wilken, S. (2022). Mixotrophy in the bloom-forming genus Phaeocystis and other haptophytes. Harmful Algae 117: 102292.
    Korlevic, M.; Markovski, M.; Herndl, G.J.; Najdek, M. (2022). Temporal variation in the prokaryotic community of a nearshore marine environment. NPG Scientific Reports 12(1): 16859.
    Krause, S.; Gfrerer, S.; von Kügelgen, A.; Reuse, C.; Dombrowski, N.; Villanueva, L.; Bunk, B.; Spröer, C.; Neu, T.R.; Kuhlicke, U.; Schmidt-Hohagen, K.; Hiller, K.; Bharat, T.A.M.; Rachel, R.; Spang, A.; Gescher, J. (2022). The importance of biofilm formation for cultivation of a Micrarchaeon and its interactions with its Thermoplasmatales host. Nature Comm. 13: 1735.
    Kulichevskaya, I.S.; Ivanova, A.A.; Suzina, N.E.; Sinninghe Damsté, J.S.; Dedysh, S.N. (2022). Anatilimnocola floriformis sp. nov., a novel member of the family Pirellulaceae from a boreal lake, and emended description of the genus Anatilimnocola. Antonie van Leeuwenhoek 115: 1253-1264.
    Kusch, S.; Rush, D. (2022). Revisiting the precursors of the most abundant natural products on Earth: a look back at 30+ years of bacteriohopanepolyol (BHP) research and ahead to new frontiers. Org. Geochem. 172: 104469.
    Lattaud, J.; Eglinton, T.I.; Tallon, M.; Bröder, L.; Erdem, Z.; Ausín, B. (2022). Grain size controls on long-chain diol distributions and proxy signals in marine sediments. Front. Mar. Sci. 9: 1004096.
    Leliaert, F.; Kelly, E.L.A.; Janouskovec, J.; Fox, M.D.; Johnson, M.D.; Redfern, F.M.; Eria, T.; Haas, A.F.; Sala, E.; Sandin, S.A.; Smith, J.E. (2022). Brilliantia kiribatiensis, a new genus and species of Cladophorales (Chlorophyta) from the remote coral reefs of the Southern Line Islands, Pacific Ocean. J. Phycol. 58(2): 183-197.
    Liang, J.; Guo, Y.; Richter, N.; Xie, H.; Vachula, R.S.; Lupien, R.L.; Zhao, B.; Wang, M.; Yao, Y.; Hou, J.; Liu, J.; Russell, J.M. (2022). Calibration and application of branched GDGTs to Tibetan lake sediments: The influence of temperature on the fall of the Guge Kingdom in Western Tibet, China. Paleoceanography and Paleoclimatology 37(5): e2021PA004393.
    Liu, L.; Huang, W.-C.; Pang, J.; Li, J.; Huang, Y.; Zou, D.; Du, H.; Liu, Y.; Li, M. (2023). Isolation and genomics of Futiania mangrovii gen. nov., sp. nov., a rare and metabolically versatile member in the class Alphaproteobacteria. Microbiology Spectrum 11(1): e04110-22.
    Malfertheiner, L.; Martínez-Pérez, C.; Zhao, Z.; Herndl, G.J.; Baltar, F. (2022). Phylogeny and metabolic potential of the candidate phylum SAR324. Biology-Basel 11(4): 599.
    Markovski, M.; Najdek, M.; Herndl, G.J.; Korlevic, M. (2022). Compositional stability of sediment microbial communities during a seagrass meadow decline. Front. Mar. Sci. 9: e966070.
    Martijn, J.; Vosseberg, J.; Guy, L.; Offre, P.; Ettema, T.J.G. (2022). Phylogenetic affiliation of mitochondria with Alpha-II and Rickettsiales is an artefact. Nature Ecology & Evolution 6: 1829-1831.
    Martinez Alvarez, L.; Bolhuis, H.; Mau, G.K.; Kok-Gan, C.; Sing, C.C.; Mac Cormack, W.; Ruberto, L. (2022). Identification of key bacterial players during successful full-scale soil field bioremediation in Antarctica. Int. Biodeterior. Biodegrad. 168: 105354.
    Martínez-Pérez, C.; Greening, C.; Bay, S.K.; Lappan, R.J.; Zhao, Z.; De Corte, D.; Hulbe, C.; Ohneiser, C.; Stevens, C.; Thomson, B.; Stepanauskas, R.; González, J.M.; Logares, R.; Herndl, G.J.; Morales, S.E.; Baltar, F. (2022). Phylogenetically and functionally diverse microorganisms reside under the Ross Ice Shelf. Nature Comm. 13(1): 117.
    Materic, D.; Holzinger, R.; Niemann, H. (2022). Nanoplastics and ultrafine microplastic in the Dutch Wadden Sea – The hidden plastics debris? Sci. Total Environ. 846: 157371.
    Matthijnssens, J.; Attoui, H.; Bányai, K.; Brussaard, C.; Danthi, P.; del Vas, M.; Dermody, T.S.; Duncan, R.; Fang, Q.; Johne, R.; Mertens, P.P.C.; Mohd Jaafar, F.; Patton, J.T.; Sasaya, T.; Suzuki, N.; Wei, T. (2022). ICTV Virus Taxonomy Profile: Spinareoviridae 2022. J. Gen. Virol. 103(11).
    Matthijnssens, J.; Attoui, H.; Bányai, K.; Brussaard, C.P.D.; Danthi, P.; del Vas, M.; Dermody, T.S.; Duncan, R.; Fang, Q.; Johne, R.; Mertens, P.P.C.; Mohd Jaafar, F.; Patton, J.T.; Sasaya, T.; Suzuki, N.; Wei, T. (2022). ICTV Virus Taxonomy Profile: Sedoreoviridae 2022. J. Gen. Virol. 103(10): 001782.
    Mayer, F.; Sabel-Becker, B.; Holtmann, D. (2022). Enhanced electron uptake and methane production by corrosive methanogens during electromethanogenesis. Microorganisms 10(11): 2237.
    Mellink, Y.; van Emmerik, T.; Kooi, M.; Laufkötter, C.; Niemann, H. (2022). The Plastic Pathfinder: A macroplastic transport and fate model for terrestrial environments. Frontiers in Environmental Science 10: 979685.
    Moody, E.R.R.; Mahendrarajah, T.A.; Dombrowski, N.; Clark, J.W.; Petitjean, C.; Offre, P.; Szöllosi, G.J.; Spang, A.; Williams, T.A. (2022). An estimate of the deepest branches of the tree of life from ancient vertically evolving genes. eLIFE 11: e66695.
    Munson-McGee, J.H.; Lindsay, M.R.; Sintes, E.; Brown, J.M.; D’Angelo, T.; Brown, J.; Lubelczyk, L.C.; Tomko, P.; Emerson, D.; Orcutt, B.N.; Poulton, N.J.; Herndl, G.J.; Stepanauskas, R. (2022). Decoupling of respiration rates and abundance in marine prokaryoplankton. Nature (Lond.) 712(7941): 764-770.
    Nelson, C.E.; Wegley Kelly, L.; Haas, A.F. (2023). Microbial interactions with dissolved organic matter are central to coral reef ecosystem function and resilience. Ann. Rev. Mar. Sci. 15: 431-460.
    Patterson, M.O.; Levy, R.H.; Kulhanek, D.K.; van de Flierdt, T.; Horgan, H.; Dunbar, G.B.; Naish, T.R.; Ash, J.; Pyne, A.; Mandeno, D.; Winberry, P.; Harwood, D.M.; Florindo, F.; Jimenez-Espejo, F.J.; Läufer, A.; Yoo, K.-C.; Seki, O.; Stocchi, P.; Klages, J.P.; Lee, J.I.; Colleoni, F.; Suganuma, Y.; Gasson, E.; Ohneiser, C.; Flores, J.-A.; Try, D.; Kirkman, R.; Koch, D.; the SWAIS 2C Science Team (2022). Sensitivity of the West Antarctic Ice Sheet to +2 °C (SWAIS 2C). Sci. Drill. 30: 101-112.
    Pinto, M.; Zhao, Z.; Klun, K.; Libowitzky, E.; Herndl, G.J. (2022). Microbial consortiums of putative degraders of low-density polyethylene-associated compounds in the ocean. mSystems 7(2): e01415-21.
    Polhill, L.; de Bruijn, R.; Amaral-Zettler, L.; Praetorius, A.; van Wezel, A. (2022). Daphnia magna's favorite snack: Biofouled plastics. Environ. Toxicol. Chem. 41(8): 1977-1981.
    Richter, N.; Russell, J.M.; Amaral-Zettler, L.; DeGroff, W.; Raposeiro, P.M.V.M.; Gonçalves, V.; de Boer, E.J.; Pla-Rabes, S.; Hernandez, A.; Benavente, M.; Ritter, C.; Sáez, A.; Bao, R.; Trigo, R.M.; Prego, R.; Giralt, S. (2022). Long-term hydroclimate variability in the sub-tropical North Atlantic and anthropogenic impacts on lake ecosystems: A case study from Flores Island, the Azores. Quat. Sci. Rev. 285: 107525.
    Riekenberg, P.M.; van der Heide, T.; Holthuijsen, S.; van der Veer, H.W.; van der Meer, M.T.J. (2022). Compound-specific stable isotope analysis of amino acid nitrogen reveals detrital support of microphytobenthos in the Dutch Wadden Sea benthic food web. Front. Ecol. Evol. 10: 951047.
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    Rosselli, R.; López-Pérez, M.; Martin-Cuadrado, A.-B.; Rodríguez-Valera, F.; Bolhuis, H. (2022). Differences in gene expression patterns between cultured and natural Haloquadratum walsbyi ecotypes. Front. Microbiol. 13: 1044446.
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    Sahonero Canavesi, D.X.; Villanueva, L.; Bale, N.J.; Bosviel, J.; Koenen, M.; Hopmans, E.C.; Sinninghe Damsté, J.S. (2022). Changes in the distribution of membrane lipids during growth of Thermotoga maritima at different temperatures: Indications for the potential mechanism of biosynthesis of ether-bound diabolic acid (membrane-spanning) lipids. Appl. Environ. Microbiol. 88(2).
    Salazar Alekseyeva, K.; Herndl, G.J.; Baltar, F. (2022). Extracellular enzymatic activities of oceanic pelagic fungal strains and the influence of temperature. Journal of Fungi 8(6): 571.
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    Santin, A.; Balzano, S.; Russo, M.T.; Esposito, F.P.; Ferrante, M.I.; Blasio, M.; Cavalletti, E.; Sardo, A. (2022). Microalgae-based PUFAs for food and feed: Current applications, future possibilities, and constraints. J. Mar. Sci. Eng. 10(7): 844.
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    Sinninghe Damsté, J.S.; Warden, L.A.; Berg, C.; Jürgens, K.; Moros, M. (2022). Evaluation of the distributions of hydroxylated glycerol dibiphytanyl glycerol tetraethers (GDGTs) in Holocene Baltic Sea sediments for reconstruction of sea surface temperature: the effect of changing salinity. Clim. Past 18(10): 2271-2288.
    Sinninghe Damsté, J.S; Weber, Y.; Zopfi, J.; Lehmann, M.F.; Niemann, H. (2022). Distributions and sources of isoprenoidal GDGTs in Lake Lugano and other central European (peri-)alpine lakes: Lessons for their use as paleotemperature proxies. Quat. Sci. Rev. 277: 107352.
    Sorokin, D.Y.; Elcheninov, A.G.; Khizhniak, T.V.; Koenen, M.; Bale, N.J.; Sinninghe Damsté, J.S.; Kublanov, I.V. (2022). Natronocalculus amylovorans gen. nov., sp. nov., and Natranaeroarchaeum aerophilus sp. nov., dominant culturable amylolytic natronoarchaea from hypersaline soda lakes in southwestern Siberia. Syst. Appl. Microbiol. 45(4): 126336.
    Sorokin, D.Y.; Yakimov, M.; Messina, E.; Merkel, A.Y.; Koenen, M.; Bale, N.J.; Sinninghe Damsté, J.S. (2022). Natranaeroarchaeum sulfidigenes gen. nov., sp. nov., carbohydrate-utilizing sulfur-respiring haloarchaeon from hypersaline soda lakes, a member of a new family Natronoarchaeaceae fam. nov. in the order Halobacteriales. Syst. Appl. Microbiol. 45(6): 126356.
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    Spang, A.; Mahendrarajah, T.A.; Offre, P.; Stairs, C.W. (2022). Evolving perspective on the origin and diversification of cellular life and the virosphere. Genome Biology and Evolution 14(6): evac034.
    Su, G.; Zopfi, J.; Niemann, H.; Lehmann, M.F. (2022). Multiple groups of methanotrophic bacteria mediate methane oxidation in anoxic lake sediments. Front. Microbiol. 13: 864630.
    Suominen, S.; Gomez-Saez, G.V.; Dittmar, T.; Sinninghe Damsté, J.S; Villanueva, L. (2022). Interplay between microbial community composition and chemodiversity of dissolved organic matter throughout the Black Sea water column redox gradient. Limnol. Oceanogr. 67(2): 329-347.
    Vaksmaa, A.; Egger, M.; Lüke, C.; Martins, P.D.; Rosselli, R.; Abdala Asbun, A.; Niemann, H. (2022). Microbial communities on plastic particles in surface waters differ from subsurface waters of the North Pacific Subtropical Gyre. Mar. Pollut. Bull. 182: 113949.
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    van Kemenade, Z.R.; Villanueva, L.; Hopmans, E.C.; Kraal, P.; Witte, H.J.; Sinninghe Damsté, J.S.; Rush, D. (2022). Bacteriohopanetetrol-x: constraining its application as a lipid biomarker for marine anammox using the water column oxygen gradient of the Benguela upwelling system. Biogeosciences 19(1): 201-221.
    Vasiliev, I.; van der Meer, M.T.J.; Stoica, M.; Krijgsman, W.; Reichart, G.-J.; Lazarev, S.; Butiseaca, G.A.; Niedermeyer, E.M.; Aliyeva, E.; van Baak, C.G.C.; Mulch, A. (2022). Biomarkers reveal two paramount Pliocene-Pleistocene connectivity events in the Caspian Sea Basin. Palaeogeogr. Palaeoclimatol. Palaeoecol. 587: 110802.
    Villanueva, L.; Coolen, M.J.L. (2022). Contributions of genomics to lipid biomarker research: From paleoclimatology to evolution. Elements 18(2): 87-92.
    Wang, F.; Cvirkaite-Krupovic, V.; Vos, M.; Beltran, L.C.; Kreutzberger, M.A.B.; Winter, J.-M.; Su, Z.; Liu, J.; Schouten, S.; Krupovic, M.; Egelman, E.H. (2022). Spindle-shaped archaeal viruses evolved from rod-shaped ancestors to package a larger genome. Cell 185(8): 1297-1307.e11.
    Wegley Kelly, L.; Nelson, C.E.; Petras, D.; Koester, I.; Quinlan, Z.A.; Arts, M.G.I.; Nothias, L.-F.; Comstock, J.; White, B.M.; Hopmans, E.C.; van Duyl, F.C.; Carlson, C.A.; Aluwihare, L.I.; Dorrestein, P.C.; Haas, A.F. (2022). Distinguishing the molecular diversity, nutrient content, and energetic potential of exometabolomes produced by macroalgae and reef-building corals  . Proc. Natl. Acad. Sci. U.S.A. 119(5): e2110283119.
    Weiss, G.M.; Lattaud, J.; van der Meer, M.T.J.; Eglinton, T.I. (2022). Co-evolution of the terrestrial and aquatic ecosystem in the Holocene Baltic Sea. Clim. Past 18(2): 233-248.
    Ye, Naihao; Han, Wentao; Toseland, Andrew; Wang, Yitao; Fan, Xiao; Xu, Dong; van Oosterhout, Cock; Aslam, Shazia N.; Barry, Kerrie; Beszteri, Bank; Brussaard, Corina; Clum, Alicia; Copeland, Alex; Daum, Chris; Duncan, Anthony; Eloe-Fadrosh, Emiley; Fong, Allison; Foster, Brian; Foster, Bryce; Ginzburg, Michael; Huntemann, Marcel; Ivanova, Natalia N.; Kyrpides, Nikos C.; Martin, Kara; Moulton, Vincent; Mukherjee, Supratim; Palaniappan, Krishnaveni; Reddy, T. B. K.; Roux, Simon; Schmidt, Katrin; Strauss, Jan; Timmermans, Klaas; Tringe, Susannah G.; Underwood, Graham J. C.; Valentin, Klaus U.; van de Poll, Willem H.; Varghese, Neha; Grigoriev, Igor V.; Tagliabue, Alessandro; Zhang, Jian; Zhang, Yan; Ma, Jian; Qiu, Huan; Li, Youxun; Zhang, Xiaowen; Mock, Thomas; Sea of Change Consortium (2022). The role of zinc in the adaptive evolution of polar phytoplankton. Nature Ecology & Evolution 6(7): 965-978.
    Zhao, S.; Zettler, E.R.; Bos, R.P.; Lin, P.; Amaral-Zettler, L.; Mincer, T.J. (2022). Large quantities of small microplastics permeate the surface ocean to abyssal depths in the South Atlantic Gyre. Glob. Chang. Biol. 28(9): 2991-3006.
  • 2021
    Achlatis, M.; van der Zande, R.M.; Webb, A.E.; de Bakker, D.M.; de Nooijer, L.J.; de Goeij, J.M. (2021). Photosynthetically stimulated bioerosion in symbiotic sponges: the role of glycerol and oxygen. Coral Reefs 40(3): 881-891.
    Ahn, A.-C.; Jongepier, E.; Schuurmans, J.M.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S; Galinski, E.A.; Roman, P.; Sorokin, D.Y.; Muyzer, G. (2021). Molecular and physiological adaptations to low temperature in Thioalkalivibrio strains isolated from soda lakes with different temperature regimes. mSystems 6(2): e01202-20.
    Amaral-Zettler, L.A. (2021). Latitudinal Diversity Gradients (LDGs) and macroalgal microbiomes: A chimera of biotic and abiotic effects? J. Phycol. 57(6): 1679-1680.
    Amaral-Zettler, L.A.; Ballerini, T.; Zettler, E.R.; Abdala Asbun, A.; Adame, A.; Casotti, R.; Dumontet, B.; Donnarumma, V.; Engelmann, J.C.; Frère, L.; Mansui, J.; Philippon, M.; Pietrelli, L.; Sighicelli, M. (2021). Diversity and predicted inter- and intra-domain interactions in the Mediterranean Plastisphere. Environ. Pollut. 286: 117439.
    Amaral-Zettler, L.A.; Zettler, E.R.; Mincer, T.J. ; Klaassen, M.A.; Gallager, S.M. (2021). Biofouling impacts on polyethylene density and sinking in coastal waters: A macro/micro tipping point? Wat. Res. 201: 117289.
    Bale, N.J.; Ding, S.; Hopmans, E.C.; Arts, M.G.I.; Villanueva, L.; Boschman, C.; Haas, A.F.; Schouten, S.; Sinninghe Damsté, J.S (2021). Lipidomics of environmental microbial communities. I: visualization of component distributions using untargeted analysis of high-resolution mass spectrometry data. Front. Microbiol. 12.
    Baltar, F.; Alvarez-Salgado, X.A.; Aristegui, J.; Benner, R.; Hansell, D.A.; Herndl, G.J.; Lønborg, C. (2021). What is refractory organic matter in the ocean? Front. Mar. Sci. 8: 642637.
    Baltar, F.; Zhao, Z.; Herndl, G.J. (2021). Potential and expression of carbohydrate utilization by marine fungi in the global ocean. Microbiome 9: 106.
    Balzano, S.; Jamieson, T.; Leterme, S. (2021). Changes in microbial communities during seawater pre-treatment within a desalination plant. Aquat. Microb. Ecol. 86: 63-68.
    Baquero, D.P.; Gazi, A.D.; Sachse, M.; Liu, J.; Schmitt, C.; Moya-Nilges, M.; Schouten, S.; Prangishvili, D.; Krupovic, M. (2021). A filamentous archaeal virus is enveloped inside the cell and released through pyramidal portals. Proc. Natl. Acad. Sci. U.S.A. 118(32): e2105540118.
    Baxter, A.J.; Peterse, F.; Verschuren, D.; Sinninghe Damsté, J.S. (2021). Anoxic in situ production of bacterial GMGTs in the water column and surficial bottom sediments of a meromictic tropical crater lake: Implications for lake paleothermometry. Geochim. Cosmochim. Acta 306: 171-188.
    Baxter, A.J.; van Bree, L.G.J.; Peterse, F.; Hopmans, E.C.; Villanueva, L.; Verschuren, D.; Sinninghe Damste, J.S. (2021). Seasonal and multi-annual variation in the abundance of isoprenoid GDGT membrane lipids and their producers in the water column of a meromictic equatorial crater lake (Lake Chala, East Africa). Quat. Sci. Rev. 273: 107263.
    Biggs, T.E.G.; Huisman, J.; Brussaard, C.P.D. (2021). Viral lysis modifies seasonal phytoplankton dynamics and carbon flow in the Southern Ocean. ISME J. 15: 3615-3622.
    Blanchet, C.L.; Tjallingii, R.; Schleicher, A.M.; Schouten, S.; Frank, M.; Brauer, A. (2021). Deoxygenation dynamics on the western Nile deep-sea fan during sapropel S1 from seasonal to millennial timescales. Clim. Past 17(3): 1025-1050.
    Blasio, M.; Balzano, S. (2021). Fatty acids derivatives From eukaryotic microalgae, pathways and potential applications. Front. Microbiol. 12: 718933.
    Boden, J.S.; Grego, M.; Bolhuis, H.; Sánchez-Baracaldo, P. (2021). Draft genome sequences of three filamentous cyanobacteria isolated from brackish habitats. Journal of Genomics 9: 20-25.
    Braun, A.; Spona-Friedl, M.; Avramov, M.; Elsner, M.; Baltar, F.; Reinthaler, T.; Herndl, G.J.; Griebler, C. (2021). Reviews and syntheses: Heterotrophic fixation of inorganic carbon – significant but invisible flux in environmental carbon cycling. Biogeosciences 18(12): 3689-3700.
    Butiseaca, G.A.; Vasiliev, I.; Van der Meer, M.T.J.; Krijgsman, W.; Palcu, D.V.; Feurdean, A.; Niedermeyer, E.M.; Mulch, A. (2021). Severe late Miocene droughts affected western Eurasia. Global Planet. Change 206: 103644.
    Çagatay, M.N.; Eris, K.; Erdem, Z. (2021). Morphology and late Pleistocene-Holocene sedimentation of the Strait of İstanbul (Bosphorus): A review. Geol. Soc. Lond. Spec. publ. 523: SP523-2021-48.
    Campana, S.; Hudspith, M.; Lankes, D.; de Kluijver, A.; Demey, C.; Schoorl, J.; Absalah, S.; van der Meer, M.T.J.; Mueller, B.; de Goeij, J.M. (2021). Processing of naturally sourced macroalgal- and coral-dissolved organic matter (DOM) by high and low microbial abundance encrusting sponges. Front. Mar. Sci. 8: 640583.
    Coleman, G.A.; Davín, A.A.; Mahendrarajah, T.A.; Szánthó, L.L.; Spang, A.; Hugenholtz, P.; Szöllosi, G.J.; Williams, T.A. (2021). A rooted phylogeny resolves early bacterial evolution. Science (Wash.) 372(6542): eabe0511.
    De Anda, V.; Chen, L.-X.; Dombrowski, N.; Hua, Z.-S.; Jiang, H.-C.; Banfield, J.F.; Li, W.-J.; Baker, B.J. (2021). Brockarchaeota, a novel archaeal phylum with unique and versatile carbon cycling pathways. Nature Comm. 12.
    De Anda, V.; Chen, L.-X.; Dombrowski, N.; Hua, Z.-S.; Jiang, H.-C.; Banfield, J.F.; Li, W.-J.; Baker, B.J. (2021). Brockarchaeota, a novel archaeal phylum with unique and versatile carbon cycling pathways. Nature Comm. 12(1).
    De Corte, D.; Muck, S.; Tiroch, J.; Mena, C.; Herndl, G.J.; Sintes, E. (2021). Microbes mediating the sulfur cycle in the Atlantic Ocean and their link to chemolithoautotrophy. Environ. Microbiol. 23(11): 7152-7167.
    de L. Sobrinho, R.; Bernardes, M.C.; de Rezende, C.E.; Kim, J.-H; Schouten, S.; Sinninghe Damsté, J.S (2021). A multiproxy approach to characterize the sedimentation of organic carbon in the Amazon continental shelf. Mar. Chem. 232: 103961.
    de Vogel, F.A.; Schlundt, C.; Stote, R.E.; Ratto, J.A.; Amaral-Zettler, L.A. (2021). Comparative genomics of marine bacteria from a historically defined plastic biodegradation consortium with the capacity to biodegrade polyhydroxyalkanoates. Microorganisms 9: 186.
    Dearing Crampton-Flood, E.; van der Weijst, C.M.H.; van der Molen, G.; Bouquet, M.; Yedema, Y.; Donders, T.H.; Sangiorgi, F.; Sluijs, A.; Sinninghe Damsté, J.S; Peterse, F (2021). Identifying marine and freshwater overprints on soil-derived branched GDGT temperature signals in Pliocene Mississippi and Amazon River fan sediments. Org. Geochem. 154: 104200.
    Ding, S.; Bale, N.J.; Hopmans, E.C.; Villanueva, L.; Arts, M.G.I.; Schouten, S.; Sinninghe Damsté, J.S (2021). Lipidomics of environmental microbial communities. II: characterization using molecular networking and information theory. Front. Microbiol. 12: 659315.
    Dombrowski, N.; Mahendrarajah, T.A.; Gross, S.T.; Eme, L.; Spang, A. (2021). Archaea, in: Green, L.H. et al. Practical Handbook of Microbiology, 4th edition. pp. 229-248.
    Eich, C.; Pont, S.B.E.H.; Brussaard, C.P.D. (2021). Effects of UV radiation on the chlorophyte Micromonas polaris host–virus interactions and MpoV-45T virus infectivity. Microorganisms 9(12): 2429.
    Erdem, Z.; Lattaud, J.; van Erk, M.R.; Mezger, E.M.; Reichart, G.-J.; Lückge, A.; Sinninghe Damste, J.S.; Schouten, S. (2021). Applicability of the long chain diol index (LDI) as a sea surface temperature proxy in the Arabian Sea. Paleoceanography and Paleoclimatology 36(12): e2021PA004255.
    Evans, C.; Brandsma, J.; Meredith, M.P.; Thomas, D.N.; Venables, H.J.; Pond, D.W.; Brussaard, C.P.D. (2021). Shift from carbon flow through the microbial loop to the viral shunt in coastal Antarctic Waters during Austral Summer. Microorganisms 9(2): 460.
    Fischer, P.Q.; Sánchez-Andrea, I.; Stams, A.J.M.; Villanueva, L.; Sousa, D.Z. (2021). Anaerobic microbial methanol conversion in marine sediments. Environ. Microbiol. 23(3): 1348-1362.
    Fletcher, T.; Eble, C.; Sinninghe Damsté, J.S.; Brown, K.J.; Rybczynski, N.; Gosse, J.; Liu, Z.; Ballantyne, A. (2021). Widespread wildfire across the Pliocene Canadian Arctic Archipelago. Palaeogeogr. Palaeoclimatol. Palaeoecol. 584: 110653.
    Foekema, E.; van der Molen, J.; Asjes, A.; Bijleveld, A.; Brasseur, S.; Camphuysen, K. (C.J.); Van Franeker, J.A.; Holthuijsen, S.; Kentie, R.; Kühn, S.; Leopold, M.; Kleine Schaars, L.; Lok, T.; Niemann, H.; Schop, J. (2021). Ecologische effecten van het incident met de MSC Zoe op het Nederlandse Waddengebied, met focus op microplastics. NIOZ-rapport, 2021(03). NIOZ Royal Netherlands Institute for Sea Research: Texel. 98 pp.
    George, E.; Mullinix, J.A.; Meng, F.; Bailey, B.A.; Edwards, C.; Felts, B.; Haas, A.F.; Hartmann, A.C.; Mueller, B.; Roach, T.N.F.; Salamon, P.; Silveira, C.B.; Vermeij, M.J.A.; Rohwer, F.; Luque, A. (2021). Space-filling and benthic competition on coral reefs. PeerJ 9: e11213.
    Glatzel, T.; Herndl, G. (2021). Recognizing the complexity of soil organic carbon dynamics in vegetated coastal habitats. Glob. Chang. Biol. 27(1): 3-4.
    Gründger, F.; Probandt, D.; Knittel, K.; Carrier, V.; Kalenitchenko, D.; Silyakova, A.; Serov, P.; Ferré, B.; Svenning, M.M.; Niemann, H. (2021). Seasonal shifts of microbial methane oxidation in Arctic shelf waters above gas seeps. Limnol. Oceanogr. 66(5): 1896-1914.
    Guerrero-Cruz, S.; Vaksmaa, A.; Horn, M.A.; Niemann, H.; Pijuan, M.; Ho, A. (2021). Methanotrophs: discoveries, environmental relevance, and a perspective on current and future applications. Front. Microbiol. 12: 678057.
    Häggi, C.; Hopmans, E.C.; Schefuß, E.; Sawakuchi, A.O.; Schreuder, L.T.; Bertassoli, D.J.; Chiessi, C.M.; Mulitza, S.; Sawakuchi, H.O.; Baker, P.A.; Schouten, S. (2021). Negligible quantities of particulate low‐temperature pyrogenic carbon reach the Atlantic Ocean via the Amazon River. Global Biogeochem. Cycles 35(9): e2021GB006990.
    Holzheimer, M.; Sinninghe Damste, J.S.; Schouten, S.; Havenith, R.W.A.; Minnaard, A.J. (2021). Total synthesis of the alleged structure of crenarchaeol enables structure revision. Angew. Chem. 133(32): 17645-17654.
    Hopmans, E.C.; Smit, N.T.; Schwartz-Narbonne, R.; Sinninghe Damsté, J.S.; Rush, D. (2021). Analysis of non-derivatized bacteriohopanepolyols using UHPLC-HRMS reveals great structural diversity in environmental lipid assemblages. Org. Geochem. 160: 104285.
    Hörnlein, C.; Bolhuis, H. (2021). Daily rhythmicity in coastal microbial mats, in: Johnson, C.H. et al. Circadian rhythms in bacteria and microbiomes. .
    Jacques, C.; Sapart, C.J.; Fripiat, F.; Carnat, G.; Zhou, J.; Delille, B.; Röckmann, T.; van der Veen, C.; Niemann, H.; Haskell, T.; Tison, J.-L. (2021). Sources and sinks of methane in sea ice: insights from stable isotopes. Elem. Sci. Anth. 9(1): 00167.
    Jiao, N.; Liu, J.; Edwards, B.; Lv, Z.; Cai, R.; Liu, Y.; Xiao, X.; Wang, J.; Jiao, F.; Wang, R.; Huang, X.; Guo, B.; Sun, J.; Zhang, R.; Zhang, Y.; Tang, K.; Zheng, Q.; Azam, F.; Batt, J.; Cai, W.-J.; He, C.; Herndl, G.J.; Hill, P.; Hutchins, D.; LaRoche, J.; Lewis, M.; MacIntyre, H.; Polimene, L.; Robinson, C.; Shi, Q.; Suttle, C.A.; Thomas, H.; Wallace, D.; Legendre, L. (2021). Correcting a major error in assessing organic carbon pollution in natural waters. Science Advances 7(16): eabc7318.
    Klunder, L.; van Bleijswijk, J.D.L.; Kleine Schaars, L.; van der Veer, H.W.; Luttikhuizen, P.C. (2021). Impact of mechanical Arenicola dredging on the benthic fauna communities: assessed by a morphological and molecular approach. Mar. Ecol. Prog. Ser. 673: 17-28.
    Korlevic, M.; Markovski, M.; Zhao, Z.; Herndl, G.; Najdek, M. (2021). Selective DNA and protein isolation from marine macrophyte surfaces. Front. Microbiol. 12: 665999.
    Korlevic, M.; Markovski, M.; Zhao, Z.; Herndl, G.; Najdek, M. (2021). Seasonal dynamics of epiphytic microbial communities on marine macrophyte surfaces. Front. Microbiol. 12: 671342.
    Lara, P.; Vega-Alvarado, L.; Sahonero Canavesi, D.X.; Koenen, M.; Villanueva, L.; Riveros-Mckay, F.; Morett, E.; Juárez, K. (2021). Transcriptome Analysis Reveals Cr(VI) Adaptation Mechanisms in Klebsiella sp. Strain AqSCr. Front. Microbiol. 12.
    Lattaud, J.; Balzano, S.; van der Meer, M.T.J.; Villanueva, L.; Hopmans, E.C.; Sinninghe Damsté, J.S; Schouten, S. (2021). Sources and seasonality of long-chain diols in a temperate lake (Lake Geneva). Org. Geochem. 156: 104223.
    Linck-Paulus, L.; Lämmerhirt, L.; Völler, D.; Meyer, K.; Engelmann, J.C.; Spang, R.; Eichner, N.; Meister, G.; Kuphal, S.; Bosserhoff, A.K. (2021). Learning from embryogenesis: a comparative expression analysis in melanoblast differentiation and tumorigenesis reveals miRNAs driving melanoma development. Journal of Clinical Medicine 10(11): 2259.
    Lippmann, T.J.R.; in 't Zandt, M.H.; Van der Putten, N.; Busschers, F.S.; Hijma, M.P.; van der Velden, P.; de Groot, T.; van Aalderen, Z.; Meisel, O.H.; Slomp, C.P.; Niemann, H.; Jetten, M.S.M.; Dolman, H.A.J.; Welte, C.U. (2021). Microbial activity, methane production, and carbon storage in Early Holocene North Sea peats. Biogeosciences 18(19): 5491-5511.
    Little, M.; George, E.E.; Arts, M.G. I.; Shivak, J.; Benler, S.; Huckeba, J.; Quinlan, Z.A.; Boscaro, V.; Mueller, B.; Güemes, A.G.C.; Rojas, M.I.; White, B.; Petras, D.; Silveira, C. B.; Haas, A.F.; Kelly, L.W.; Vermeij, M.J.A.; Quinn, R.A.; Keeling, P.J.; Dorrestein, P.C.; Rohwer, F.; Roach, T.N.F. (2021). Three-dimensional molecular cartography of the Caribbean reef-building coral Orbicella faveolata. Front. Mar. Sci. 8: 627724.
    Martin, K.; Schmidt, K.; Toseland, A.; Boulton, C.A.; Barry, K.; Beszteri, B.; Brussaard, C.P.D.; Clum, A.; Daum, C.G.; Eloe-Fadrosh, E.; Fong, A.; Foster, B.; Foster, B.; Ginzburg, M.; Huntemann, M.; Ivanova, N.N.; Kyrpides, N.C.; Lindquist, E.; Mukherjee, S.; Palaniappan, K.; Reddy, T.B.K.; Rizkallah, M.R.; Roux, S.; Timmermans, K.; Tringe, S.G.; van de Poll, W.H.; Varghese, N.; Valentin, K.U.; Lenton, T.M.; Grigoriev, I.V.; Leggett, R.M.; Moulton, V.; Mock, T. (2021). The biogeographic differentiation of algal microbiomes in the upper ocean from pole to pole. Nature Comm. 12(1).
    Massicotte, P.; Amon, R.M.W.; Antoine, D.; Archambault, P.; Balzano, S.; Bélanger, S.; Benner, R.; Boeuf, D.; Bricaud, A.; Bruyant, F.; Chaillou, G.; Chami, M.; Charrière, B.; Chen, J.; Claustre, H.; Coupel, P.; Delsaut, N.; Doxaran, D.; Ehn, J.; Fichot, C.; Forget, M.-H.; Fu, P.; Gagnon, J.; Garcia, N.; Gasser, B.; Ghiglione, J.-F.; Gorsky, G.; Gosselin, M.; Gourvil, P.; Gratton, Y.; Guillot, P.; Heipieper, H.J.; Heussner, S.; Hooker, S.B.; Huot, Y.; Jeanthon, C.; Jeffrey, W.; Joux, F.; Kawamura, K.; Lansard, B.; Leymarie, E.; Link, H.; Lovejoy, C.; Marec, C.; Marie, D.; Martin, J.; Martín, J.; Massé, G.; Matsuoka, A.; McKague, V.; Mignot, A.; Miller, W.L.; Miquel, J.-C.; Mucci, A.; Ono, K.; Ortega-Retuerta, E.; Panagiotopoulos, C.; Papakyriakou, T.; Picheral, M.; Prieur, L.; Raimbault, P.; Ras, J.; Reynolds, R.A.; Rochon, A.; Rontani, J.-F.; Schmechtig, C.; Schmidt, S.; Sempéré, R.; Shen, Y.; Song, G.; Stramski, D.; Tachibana, E.; Thirouard, A.; Tolosa, I.; Tremblay, J.-É.; Vaïtilingom, M.; Vaulot, D.; Vaultier, F.; Volkman, J.K.; Xie, H.; Zheng, G.; Babin, M. (2021). The MALINA oceanographic expedition: how do changes in ice cover, permafrost and UV radiation impact biodiversity and biogeochemical fluxes in the Arctic Ocean? ESSD 13(4): 1561-1592.
    Mojica, K.D.A.; Behrenfeld, M.J.; Clay, M.; Brussaard, C.P.D. (2021). Spring accumulation rates in North Atlantic phytoplankton communities linked to alterations in the balance between division and loss. Front. Microbiol. 12: 706137.
    Morcillo-Montalbá, L.; Rodrigo-Gamiz, M.; Martinez-Ruiz, F.; Ortega-Huertas, M.; Schouten, S.; Sinninghe Damsté, J.S. (2021). Rapid climate changes in the Western most Mediterranean (Alboran Sea) over the last 35 kyr: New insights from four lipid paleothermometers (UK'37, TEXH86, RI‐OH', and LDI). Paleoceanography and Paleoclimatology 36(12): e2020PA004171.
    Peperzak, L.; van Bleijswijk, J. (2021). False-positive enterococci counts in seawater with the IDEXX Enterolert-E most probable number technique caused by Bacillus licheniformis. Environm. Sc. & Poll. Res. 28: 10654-10660.
    Piel, T; Sandrini, G.; Muyzer, G.; Brussaard, C.P.D.; Slot, P.C.; van Herk, M.J.; Huisman, J.; Visser, P.M. (2021). Resilience of microbial communities after hydrogen peroxide treatment of a eutrophic lake to suppress harmful cyanobacterial blooms. Microorganisms 9(7): 1495.
    Pieper, C.; Magalhães Loureiro, C.; Law, K.L.; Amaral-Zettler, L.A.; Quintino, V.; Rodrigues, A.M.; Ventura, M.A.; Martins, A. (2021). Marine litter footprint in the Azores Islands: A climatological perspective. Sci. Total Environ. 761: 143310.
    Poiesz, S.S.H.; Witte, J.IJ.; van der Meer, M.T.J.; van der Veer, H.W.; Soetaert, K. (2021). Trophic structure and resource utilization of the coastal fish community in the western Wadden Sea: evidence from stable isotope data analysis. Mar. Ecol. Prog. Ser. 677: 115-128.
    Raes, E.J.; Karsh, K.; Sow, S.L.S.; Ostrowski, M.; Brown, M.V.; Van de Kamp, J.; Franco-Santos, R.M.; Bodrossy, L.; Waite, A.M. (2021). Metabolic pathways inferred from a bacterial marker gene illuminate ecological changes across South Pacific frontal boundaries. Nature Comm. 12(1): 2213.
    Ramond, P.; Siano, R.; Schmitt, S.; de Vargas, C.; Marié, L.; Memery, L.; Sourisseau, M. (2021). Phytoplankton taxonomic and functional diversity patterns across a coastal tidal front. NPG Scientific Reports 11(1): 2682.
    Raposeiro, P.M.; Hernández, A.; Pla-Rabes, S.; Gonçalves, V.; Bao, R.; Sáez, A.; Shanahan, T.; Benavente, M.; de Boer, E.J.; Richter, N.; Gordon, V.; Marques, H.; Sousa, P.M.; Souto, M.; Matias, M.G.; Aguiar, N.; Pereira, C.; Ritter, C.; Rubio, M.J.; Salcedo, M.; Vázquez-Loureiro, D.; Margalef, O.; Amaral-Zettler, L.A.; Costa, A.C.; Huang, Y.; van Leeuwen, J.F. N.; Masqué, P.; Prego, R.; Ruiz-Fernández, A.C.; Sanchez-Cabeza, J.-A.; Trigo, R.; Giralt, S. (2021). Climate change facilitated the early colonization of the Azores Archipelago during medieval times. Proc. Natl. Acad. Sci. U.S.A. 118(41): e2108236118.
    Riekenberg, P.M.; Briand, M.J.; Moleana, T.; Sasal, P.; van der Meer, M.T.J.; Thieltges, D.W.; Letourneur, Y. (2021). Isotopic discrimination in helminths infecting coral reef fishes depends on parasite group, habitat within host, and host stable isotope value. NPG Scientific Reports 11: 4638.
    Riekenberg, P.M.; Camalich, J.; Svensson, E.; IJsseldijk, L.L.; Brasseur, S.M.; Witbaard, R.; Leopold, M.F.; Rebolledo, E.B.; Middelburg, J.J.; Van der Meer, M.T.J.; Sinninghe Damsté, J.S.; Schouten, S. (2021). Reconstructing the diet, trophic level and migration pattern of mysticete whales based on baleen isotopic composition. Royal Society Open Science 8(12): 210949.
    Riekenberg, P.M.; Joling, T.; IJsseldijk, L.L.; Waser, A.M.; van der Meer, M.T.J.; Thieltges, D.W. (2021). Stable nitrogen isotope analysis of amino acids as a new tool to clarify complex parasite–host interactions within food webs. Oikos (Kbh.) 31(10): 1650-1664.
    Rosselli, R.; La Porta, N.; Muresu, R.; Stevanato, P.; Concheri, G.; Squartini, A. (2021). Pangenomics of the symbiotic Rhizobiales. Core and accessory functions across a group endowed with high levels of genomic plasticity. Microorganisms 9(2): 407.
    Salazar Alekseyeva, K.; Mähnert, B.; Berthiller, F.; Breyer, E.; Herndl, G.J.; Baltar, F. (2021). Adapting an ergosterol extraction method with marine yeasts for the quantification of oceanic fungal biomass. Journal of Fungi 7(9): 690.
    Sangiorgi, F.; Quaijtaal, W.; Donders, T.H.; Schouten, S.; Louwye, S. (2021). Middle Miocene temperature and productivity evolution at a Northeast Atlantic shelf site (IODP U1318, Porcupine Basin): global and regional changes. Paleoceanography and Paleoclimatology 36(7): e2020PA004059.
    Sardo, A.; Orefice, I.; Balzano, S.; Barra, L.; Romano, G. (2021). Mini-review: potential of diatom-derived silica for biomedical applications. Applied Sciences-Basel 11(10): 4533.
    Smit, N.T. (2021). Novel lipid biomarkers for detecting microbial oxidation of methane in the environment. PhD Thesis. Utrecht University: Utrecht. ISBN 978-94-6421-424-6 .
    Smit, N.T.; Villanueva, L.; Rush, D.; Grassa, F.; Witkowski, C.R.; Holzheimer, M.; Minnaard, A.J.; Sinninghe Damsté, J.S.; Schouten, S. (2021). Novel hydrocarbon-utilizing soil mycobacteria synthesize unique mycocerosic acids at a Sicilian everlasting fire. Biogeosciences 18(4): 1463-1479.
    Sorokin, D.Y.; Diender, M.; Merkel, A.Y.; Koenen, M.; Bale, N.J.; Pabst, M.; Sinninghe Damsté, J.S.; Sousa, D.Z. (2021). Natranaerofaba carboxydovora gen. nov., sp. nov., an extremely haloalkaliphilic CO‐utilizing acetogen from a hypersaline soda lake representing a novel deep phylogenetic lineage in the class ‘Natranaerobiia’. Environ. Microbiol. 23(7): 3460-3476.
    Sorokin, D.Y.; Yakimov, M.M.; Messina, E.; Merkel, A.Y.; Koenen, M.; Bale, N.J.; Sinninghe Damsté, J.S (2021). Halapricum desulfuricans sp. nov., carbohydrate-utilizing, sulfur-respiring haloarchaea from hypersaline lakes. Syst. Appl. Microbiol. 44(6): 126249.
    Spencer-Jones, C.L.; McClymont, E.L.; Bale, N.J.; Hopmans, E.C.; Schouten, S.; Müller, J.; Abrahamsen, E.Povl; Allen, C.; Bickert, T.; Hillenbrand, C.-D.; Mawbey, E.M.; Peck, V.; Svalova, A.; Smith, J.A. (2021). Archaeal intact polar lipids in polar waters: a comparison between the Amundsen and Scotia seas. Biogeosciences 18(11): 3485-3504.
    Srivastava, A.; Saavedra, D.E.M.; Thomson, B.; Garcia, J.A.L.; Zhao, Z.; Patrick, W.M.; Herndl, G.J.; Baltar, F. (2021). Enzyme promiscuity in natural environments: alkaline phosphatase in the ocean. ISME J. 15: 3375-3383.
    Suominen, S.; Dombrowski, N.; Sinninghe Damsté, J.S; Villanueva, L. (2021). A diverse uncultivated microbial community is responsible for organic matter degradation in the Black Sea sulphidic zone. Environ. Microbiol. 23(6): 2709-2728.
    Suominen, S.; Doorenspleet; Sinninghe Damsté, J.S; Villanueva, L. (2021). Microbial community development on model particles in the deep sulfidic waters of the Black Sea. Environ. Microbiol. 23(6): 2729-2746.
    Suominen, S.; van Vliet, D.M.; Sánchez-Andrea, I.; van der Meer, M.T.J.; Sinninghe Damsté, J.S; Villanueva, L. (2021). Organic matter type defines the composition of active microbial communities originating from anoxic Baltic Sea sediments. Front. Microbiol. 12: 628301.
    Then, A.Y.-H.; Adame, M.F.; Fry, B.; Chong, V.C.; Riekenberg, P.M.; Mohammad Zakaria, R.; Lee, S.Y. (2021). Stable isotopes clearly track mangrove inputs and food web changes along a reforestation gradient. Ecosystems 24(4): 939-954.
    Tinta, T.; Klun, K.; Herndl, G.J. (2021). The importance of jellyfish–microbe interactions for biogeochemical cycles in the ocean. Limnol. Oceanogr. 66(5): 2011-2032.
    Troina, G.; Riekenberg, P.M.; Van der Meer, M.T.J.; Botta, S.; Dehairs, F.; Secchi, E.R. (2021). Combining isotopic analysis of bulk-skin and individual amino acids to investigate the trophic position and foraging areas of multiple cetacean species in the western South Atlantic. Environ. Res. 201: 111610.
    Vaksmaa, A.; Hernando-Morales, V.; Zeghal, E.; Niemann, H. (2021). Microbial degradation of marine plastics: current state and future prospects, in: Joshi, S.J. et al. Biotechnology for sustainable environment. pp. 111-154.
    Vaksmaa, A.; Knittel, K.; Abdala Asbun, A.; Goudriaan, M.; Ellrott, A.; Witte, H.J.; Vollmer, I.; Meirer, F.; Lott, C.; Weber, M.; Engelmann, J.C.; Niemann, H. (2021). Microbial communities on plastic polymers in the Mediterranean Sea. Front. Microbiol. 12: 673553.
    van de Poll, W.H.; Maat, D.S.; Fischer, F.; Visser, R.J.W.; Brussaard, C.P.D.; Buma, A.G.J. (2021). Solar radiation and solar radiation driven cycles in warming and freshwater discharge control seasonal and inter‐annual phytoplankton chlorophyll a and taxonomic composition in a high Arctic fjord (Kongsfjorden, Spitsbergen). Limnol. Oceanogr. 66(4): 1221-1236.
    van Etten, J.L.; Dunigan, D.D.; Nagasaki, K.; Schroeder, D.C.; Grimsley, N.; Brussaard, C.P.D.; Nissimov, J.I. (2021). Phycodnaviruses (Phycodnaviridae), in: Bamford, D.H. et al. Encyclopedia of Virology, Fourth Edition. pp. 687-695.
    van Haren, H.; Brussaard, C.P.D.; Gerringa, L.J.A.; van Manen, M.H.; Middag, R.; Groenewegen, R. (2021). Diapycnal mixing across the photic zone of the NE Atlantic. Ocean Sci. 17: 301-318.
    van Sebille, E.; Zettler, E.; Wienders, N.; Amaral-Zettler, L.; Elipot, S.; Lumpkin, R. (2021). Dispersion of surface drifters in the Tropical Atlantic. Front. Mar. Sci. 7: 607426.
    van Vliet, D.M.; von Meijenfeldt, F.A.B.; Dutilh, B.E.; Villanueva, L.; Sinninghe Damsté, J.S; Stams, A.J.M.; Sánchez-Andrea, I. (2021). The bacterial sulfur cycle in expanding dysoxic and euxinic marine waters. Environ. Microbiol. 23(6): 2834-2857.
    Velázquez-Sánchez, C.; Vences-Guzmán, M.Á.; Moreno, S.; Tinoco-Valencia, R.; Espín, G.; Guzmán, J.; Sahonero Canavesi, D.X.; Sohlenkamp, C.; Segura, D. (2021). PsrA positively regulates the unsaturated fatty acid synthesis operon fabAB in Azotobacter vinelandii. Microbiological Research 249: 126775.
    Villanueva, L.; von Meijenfeldt, F.A.B.; Westbye, A.B.; Yadav, S.; Hopmans, E.C.; Dutilh, B.E.; Sinninghe Damsté, J.S (2021). Bridging the membrane lipid divide: bacteria of the FCB group superphylum have the potential to synthesize archaeal ether lipids. ISME J. 15: 168-182.
    Wang, K.J.; Huang, Y.; Majaneva, M.; Belt, S.T.; Liao, S.; Novak, J.; Kartzinel, T.R.; Herbert, T.D.; Richter, N.; Cabedo-Sanz, P. (2021). Group 2i Isochrysidales produce characteristic alkenones reflecting sea ice distribution. Nature Comm. 12: 15.
    Wayman, C.; Niemann, H. (2021). The fate of plastic in the ocean environment – a minireview. Environ. Sci. Process. Impacts 23(2): 198-212.
    Webb, A.E.; de Bakker, D.M.; Soetaert, K.; da Costa, T.; van Heuven, S.; van Duyl, F.C.; Reichart, G.-J.; de Nooijer, L.J. (2021). Quantifying functional consequences of habitat degradation on a Caribbean coral reef. Biogeosciences 18(24): 6501-6516.
    Wegley Kelly, L.; Nelson, C.E.; Aluwihare, L.I.; Arts, M.G.I.; Dorrestein, P.C.; Koester, I.; Matsuda, S.B.; Petras, D.; Quinlan, Z.A.; Haas, A.F. (2021). Molecular commerce on coral reefs: using metabolomics to reveal biochemical exchanges underlying holobiont biology and the ecology of coastal ecosystems. Front. Mar. Sci. 8: 630799.
    Yadav, S.; Koenen, M.; Bale, N.; Sinninghe Damsté, J.S.; Villanueva, L. (2021). The physiology and metabolic properties of a novel, low‐abundance Psychrilyobacter species isolated from the anoxic Black Sea shed light on its ecological role. Environmental Microbiology Reports 13(6): 899-910.
    Yao, H.; Panieri, G.; Lehmann, M.F.; Himmler, T.; Niemann, H. (2021). Biomarker and isotopic composition of seep carbonates record environmental conditions in two arctic methane seeps. Front. Earth Sci. 8: 570742.
    Zeghal, E.; Vaksmaa, A.; Vielfaure, H.; Boekhout, T.; Niemann, H. (2021). The potential role of marine fungi in plastic degradation – A Review. Front. Mar. Sci. 8: 738877.
    Zhao, S.; Zettler, E.R.; Amaral-Zettler, L.A.; Mincer, T.J. (2021). Microbial carrying capacity and carbon biomass of plastic marine debris. ISME J. 15: 67-77.
  • 2020
    Abdala Asbun, A.; Besseling, M.A.; Balzano, S.; van Bleijswijk, J.D.L.; Witte, H.J.; Villanueva, L.; Engelmann, J.C. (2020). Cascabel: A scalable and versatile amplicon sequence data analysis pipeline delivering reproducible and documented results. Frontiers in Genetics 11: 489357.
    Amaral-Zettler, L.A.; Zettler, E.R.; Mincer, T. (2020). Ecology of the plastisphere. Nat. Rev., Microbiol. 18: 139-151.
    Arnold, J.; Engelmann, J.C.; Schneider, N.; Bosserhoff, A.K.; Kuphal, S. (2020). miR-488-5p and its role in melanoma. Experimental and Molecular Pathology 112: 104348.
    Bale, N.J.; Koenen, M.; Yadav, S.; Hopmans, E.C.; Villanueva, L.; Sinninghe Damsté, J.S.; Schouten, S. (2020). Diagnostic amide products of amino lipids detected in the microaerophilic bacteria Lutibacter during routine fatty acid analysis using gas chromatography. Org. Geochem. 144: 104027.
    Balzano, S.; Sardo, A.; Blasio, M.; Chahine, T.B.; Dell’Anno, F.; Sansone, C.; Brunet, C. (2020). Microalgal metallothioneins and phytochelatins and their potential use in bioremediation. Front. Microbiol. 11: article 517.
    Bart, M.C.; Mueller, B.; Rombouts, T.; van de Ven, C.; Tompkins, G.J.; Osinga, R.; Brussaard, C.P.D.; MacDonald, B.; Engel, A.; Rapp, H.T.; de Goeij, J.M. (2021). Dissolved organic carbon (DOC) is essential to balance the metabolic demands of four dominant North‐Atlantic deep‐sea sponges. Limnol. Oceanogr. 66(3): 925-938.
    Bellou, N.; Garcia, J.A.L.; Colijn, F.; Herndl, G.J. (2020). Seasonality combined with the orientation of surfaces influences the microbial community structure of biofilms in the deep Mediterranean Sea. Deep-Sea Res., Part II, Top. Stud. Oceanogr. 171: 104703.
    Besseling, M.A.; Hopmans, E.C.; Bale, N.J.; Schouten, S.; Sinninghe Damsté, J.S.; Villanueva, L. (2020). The absence of intact polar lipid-derived GDGTs in marine waters dominated by Marine Group II: Implications for lipid biosynthesis in Archaea. NPG Scientific Reports 10(1): 10 pp.
    Biggs, T. (2020). Polar phytoplankton dynamics in relation to virus and zooplankton predators. PhD Thesis. University of Amsterdam: Amsterdam. ISBN 9789491407932. 290 pp.
    Biggs, T.; Brussaard, C.P.D.; Evans, C.; Venables, H.J.; Pond, D.W. (2020). Plasticity in dormancy behaviour of Calanoides acutus in Antarctic coastal waters. ICES J. Mar. Sci./J. Cons. int. Explor. Mer 77(5): 1738-1751.
    Bolhuis, H.; Buttigieg, P.L.; Goodwin, K.; Groben, R.; Iudicone, D.; Lacoursière-Roussel, A.; Pesant, S.; Robinson, S.; Björnsson, S.; Erlendsson, L.S.; Rae, M. (2020). Atlantic Ocean Research Alliance - Marine Microbiome Roadmap. Atlantic Ocean Research Alliance (AORA): [s.l.].
    Bourtsoukidis, E.; Pozzer, A.; Sattler, T.; Matthaios, V.N.; Ernle, L.; Edtbauer, A.; Fischer, H.; Könemann, T.; Osipov, S.; Paris, J.-D.; Pfannerstill, E.Y.; Stönner, C.; Tadic, I.; Walter, D.; Wang, N.; Lelieveld, J.; Williams, J. (2020). The Red Sea deep water is a potent source of atmospheric ethane and propane. Nature Comm. 11(1): 9 pp.
    Carreira, C.; Lønborg, C.; Kühl, M.; Lillebø, A.I.; Sandaa, R.-A.; Villanueva, L.; Cruz, S. (2020). Fungi and viruses as important players in microbial mats. FEMS Microbiol. Ecol. 96(11): fiaa187.
    Chen; Becraft; Pachiadaki, M.; Brown, J.M.; Jarett, J.K.; Gasol, J.M.; Ravin, N.V.; Moser, D.P.; Nunoura, T.; Herndl, G.J.; Woyke, T.; Stepanauskas, R. (2020). Hiding in plain sight: The globally distributed bacterial candidate phylum PAUC34f. Front. Microbiol. 11: article 376.
    Clifford, E.L.; De Corte, D.; Amano, C.; Paliaga, P.; Ivancic, I.; Ortiz, V.; Najdek, M.; Herndl, G.J.; Sintes, E. (2020). Mesozooplankton taurine production and prokaryotic uptake in the northern Adriatic Sea. Limnol. Oceanogr. 65(11): 2730-2747.
    Coutinho, F.H.; Cabello-Yeves, P.J.; Gonzalez-Serrano, R.; Rosselli, R.; López-Pérez, M.; Zemskaya, T.; Zakharenko, A.S.; Ivanov, V.G.; Rodríguez-Valera, F. (2020). New viral biogeochemical roles revealed through metagenomic analysis of Lake Baikal. Microbiome 8: 163.
    Cramwinckel, M.J.; Coxall, H.K.; Sliwinska, K.K.; Polling, M.; Harper, D.P.; Bijl, P.K.; Brinkhuis, H.; Eldrett, J.S.; Houben, A.J.P.; Peterse, F; Schouten, S.; Reichart, G.-J.; Zachos, J.C.; Sluijs, A. (2020). A warm, stratified, and restricted Labrador Sea across the middle Eocene and its climatic optimum. Paleoceanography and Paleoclimatology 35(10): e2020PA003932.
    Cramwinckel, M.J.; Coxall, H.K.; Sliwinska, K.K.; Polling; Harper; Bijl, P.K.; Brinkhuis, H.; Eldrett, J.S.; Houben, A.J.P.; Peterse, F; Schouten, S.; Reichart, G.-J.; Zachos, J.C.; Sluijs, A. (2020). A warm, stratified, and restricted Labrador Sea across the middle Eocene and its climatic optimum. Paleoceanography and Paleoclimatology 35(10): e2020PA003932.
    de Bar, M.W.; Weiss, G.M.; Yildiz, C.; Rampen, S.W.; Lattaud, J.; Bale, N.J.; Mienis, F.; Brummer, G.-J. A.; Schulz, H.; Rush, D.; Kim, J.-H.; Donner, B.; Knies, J.; Lückge, A.; Stuut, J.-B.W.; Sinninghe Damsté, J.S; Schouten, S. (2020). Global temperature calibration of the Long chain Diol Index in marine surface sediments. Org. Geochem. 142: 103983.
    de Jong, A.E.E.; Guererro-Cruz, S.; van Diggelen, J.M.H.; Vaksmaa, A.; Lamers, L.P.M.; Jetten, M.S.M.; Smolders, A.J.P.; Rasigraf, O. (2020). Changes in microbial community composition, activity, and greenhouse gas production upon inundation of drained iron-rich peat soils. Soil Biol. Biochem. 149: 107862.
    Dearing Crampton-Flood, E.; Noorbergen, L.J.; Smits, D.; Boschman, R.C.; Donders, T.H.; Munsterman, D.K.; ten Veen, J.H.; Peterse, F.; Lourens, L.; Sinninghe Damsté, J.S (2020). A new age model for the Pliocene of the southern North Sea basin: a multi-proxy climate reconstruction. Clim. Past 16(2): 523-541.
    Dearing Crampton-Flood, E.; Tierney, J.E.; Peterse, F; Kirkels, F.M.S.A.; Sinninghe Damsté, J.S (2020). BayMBT: A Bayesian calibration model for branched glycerol dialkyl glycerol tetraethers in soils and peats. Geochim. Cosmochim. Acta 268: 142-159.
    Dedysh, S.N.; Kulichevskaya, I.S.; Beletsky, A.V.; Ivanova, A.A.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Mardanov, A.V.; Ravin, N.V. (2020). Lacipirellula parvula gen. nov., sp. nov., representing a lineage of planctomycetes widespread in low-oxygen habitats, description of the family Lacipirellulaceae fam. nov. and proposal of the orders Pirellulales ord. nov., Gemmatales ord. nov. and Isosphaerales ord. nov. Syst. Appl. Microbiol. 43(1): 126050.
    Dharamshi, J.E.; Tamarit, D.; Eme, L.; Stairs, C.W.; Martijn, J.; Homa, F.; Jorgensen, S.L.; Spang, A.; Ettema, T.J.G. (2020). Marine sediments illuminate Chlamydiae diversity and evolution. Curr. Biol. 30(6): 1032-1048.e7.
    Dietze, E.; Mangelsdorf, K.; Andreev, A.; Karger, C.; Schreuder, L.T.; Hopmans, E.C.; Rach, O.; Sachse, D.; Wennrich, V.; Herzschuh, U. (2020). Relationships between low-temperature fires, climate and vegetation during three late glacials and interglacials of the last 430 kyr in northeastern Siberia reconstructed from monosaccharide anhydrides in Lake El'gygytgyn sediments. Clim. Past 16(2): 799-818.
    Dombrowski, N.; Williams, T.A.; Sun, J.; Woodcroft, B.J.; Lee, J.-H.; Minh, B.Q.; Rinke, C.; Spang, A. (2020). Undinarchaeota illuminate DPANN phylogeny and the impact of gene transfer on archaeal evolution. Nature Comm. 11: Article number: 3939.
    Erdem, Z.; Schönfeld, J.; Rathburn, A.E.; Pérez, M.-E.; Cardich, J.; Glock, N. (2020). Bottom-water deoxygenation at the Peruvian margin during the last deglaciation recorded by benthic foraminifera. Biogeosciences 17(12): 3165-3182.
    Ferré, B.; Jansson, P.G.; Moser, M.; Serov, P.; Portnov, A.; Graves, C.A.; Panieri, G.; Gründger, F.; Berndt, C.; Lehmann, M.F.; Niemann, H. (2020). Reduced methane seepage from Arctic sediments during cold bottom-water conditions. Nature Geoscience 13(2): 144-148.
    Frenken, T.; Brussaard, C.P.D.; Velthuis, M.; Aben, R.; Kazanjian, G.; Hilt, S.; Kosten, S.; Peeters, E.T.H.M.; de Senerpont Domis, L.N.; Stephan, S.; Van Donk, E.; van de Waal, D. (2020). Warming advances virus population dynamics in a temperate freshwater plankton community. Limnology and Oceanography Letters 5(4): 295-304.
    Grettenberger, C.L.; Mccauley Rench, R.L.; Gruen, D.S.; Mills, D.B.; Carney, C.; Brainard, J.; Hamasaki, H.; Ramirez, R.; Watanabe, Y.; Amaral-Zettler, L.A.; Ohmoto, H.; Macalady, J.L. (2020). Microbial population structure in a stratified, acidic pit lake in the Iberian Pyrite Belt. Geomicrobiol. J. 37(7): 623-634.
    Haalboom, S.; Price, D.M.; Mienis, F.; van Bleijswijk, J.D.L.; de Stigter, H.; Witte, H.J.; Reichart, G.-J.; Duineveld, G.C.A. (2020). Patterns of (trace) metals and microorganisms in the Rainbow hydrothermal vent plume at the Mid-Atlantic Ridge. Biogeosciences 17(9): 2499-2519.
    Haro-Moreno, J.M.; Rodríguez-Valera, F.; Rosselli, R.; Martinez-Hernandez, F.; Roda-Garcia, J.J.; Gomez, M.L.; Fornas, O.; Martinez-Garcia, M.; López-Pérez, M. (2020). Ecogenomics of the SAR11 clade. Environ. Microbiol. 22(5): 1748-1763.
    Hoffmann, K.; Bienhold, C.; Buttigieg, P.L.; Knittel, K.; Laso-Pérez, R.; Rapp, J.Z.; Boetius, A.; Offre, P. (2020). Diversity and metabolism of Woeseiales bacteria, global members of marine sediment communities. ISME J. 14: 1042-1056.
    Hörnlein, C.; Confurius-Guns, V.; Grego, M.; Stal, L.J.; Bolhuis, H. (2020). Circadian clock-controlled gene expression in co-cultured, mat-forming cyanobacteria. NPG Scientific Reports 10(1).
    Klunder, L.; De Stigter, H.; Lavaleye, M.S.S.; van Bleijswijk, J.D.L.; van der Veer, H.W.; Reichart, G.-J.; Duineveld, G.C.A. (2020). A molecular approach to explore the background benthic fauna around a hydrothermal vent and their larvae: Implications for future mining of deep-sea SMS deposits. Front. Mar. Sci. 7: 134.
    Klunder, L.; Lavaleye, M.; Filippidi, A.; van Bleijswijk, J.; Reichart, G.-J.; van der Veer, H.W.; Duineveld, G.C.A.; Mienis, F. (2020). Impact of an artificial structure on the benthic community composition in the southern North Sea: assessed by a morphological and molecular approach. ICES J. Mar. Sci./J. Cons. int. Explor. Mer 77(3): 1167-1177.
    Korte, L.F.; Brummer, G.-J. A.; van der Does, M.; Guerreiro, C.V.; Mienis, F.; Munday, C.I.; Ponsoni, L.; Schouten, S.; Stuut, J.-B.W. (2020). Multiple drivers of production and particle export in the western tropical North Atlantic. Limnol. Oceanogr. 65(9): 2108-2124.
    Kulichevskaya, I.S.; Ivanova, A.; Naumoff, D.G.; Beletsky, A.V.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Mardanov, A.V.; Ravin, N.V.; Dedysh, S.N. (2020). Frigoriglobus tundricola gen. nov., sp. nov., a psychrotolerant cellulolytic planctomycete of the family Gemmataceae from a littoral tundra wetland. Syst. Appl. Microbiol. 43(5): 126129.
    Kulichevskaya, I.S.; Naumoff, D.G.; Miroshnikov, K.K.; Ivanova, A.A.; Philippov, D.A.; Hakobyan, A.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S; Liesack, W.; Dedysh, S.N. (2020). Limnoglobus roseus gen. nov., sp. nov., a novel freshwater planctomycete with a giant genome from the family Gemmataceae. Int. J. Syst. Evol. Microbiol. 70(2): 1240-1249.
    Leide, J.; Nierop, K.G.J.; Deininger, A.-C.; Staiger, S.; Riederer, M.; de Leeuw, J.W. (2020). Leaf cuticle analyses: implications for the existence of cutan/non-ester cutin and its biosynthetic origin. Ann. Bot. 126(1): 141-162.
    Leiva-Dueñas, C.; Leavitt, P.R.; Buchaca, T.; Cortizas, A.M.; López-Merino, L.; Serrano, O.; Lavery, P.S.; Schouten, S.; Mateo, M.A. (2020). Factors regulating primary producers' assemblages in Posidonia oceanica (L.) Delile ecosystems over the past 1800 years. Sci. Total Environ. 718: 137163.
    Liao, S.; Yao, Y.; Wang, L.; Wang, K.J.; Amaral-Zettler, L.; Longo, W.M.; Huang, Y. (2020). C41 methyl and C42 ethyl alkenones are biomarkers for Group II Isochrysidales. Org. Geochem. 147: 104081.
    Lohrberg, A.; Schmale, O.; Ostrovsky, I.; Niemann, H.; Held, P.; Schneider von Deimling, J. (2020). Discovery and quantification of a widespread methane ebullition event in a coastal inlet (Baltic Sea) using a novel sonar strategy. NPG Scientific Reports 10(1): 13 pp.
    Martijn, J.; Schön, M.E.; Lind, A.E.; Vosseberg, J.; Williams, T.A.; Spang, A.; Ettema, T.J.G. (2020). Hikarchaeia demonstrate an intermediate stage in the methanogen-to-halophile transition. Nature Comm. 11: 5490.
    Meesters, E.H.; Bak, R.P.M.; van Duyl, F.C. (2020). Commentary: Managing recovery resilience in coral reefs against climate-induced bleaching and hurricanes: A 15 year case study from Bonaire, Dutch Caribbean. Front. Mar. Sci. 7: article 346.
    Mojica, K.D.A.; Brussaard, C.P.D. (2020). Significance of viral activity for regulating heterotrophic prokaryote community dynamics along a meridional gradient of stratification in the Northeast Atlantic Ocean. Viruses 12(11): 1293.
    Mooshammer, M.; Alves, R.J.E.; Bayer, B.; Melcher, M.; Stieglmeier, M.; Jochum, L.; Rittmann, S.K.-M. R.; Watzka, M.; Schleper, C.; Herndl, G.J.; Wanek, W. (2020). Nitrogen isotope fractionation during archaeal ammonia oxidation: Coupled estimates from measurements of residual ammonium and accumulated nitrite. Front. Microbiol. 11: article 1710.
    Moros, M.; Kotilainen, A.T.; Snowball, I.; Neumann, T.; Perner, K.; Meier, H.E.M.; Leipe, T.; Zillén, Lovisa; Sinninghe Damsté, J.S; Schneider, R. (2020). Is ‘deep-water formation’ in the Baltic Sea a key to understanding seabed dynamics and ventilation changes over the past 7,000 years? Quaternary International 550: 55-65.
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    Najdek, M.; Korlevic, M.; Paliaga, P.; Markovski, M.; Ivancic, I.; Ivesa, L.; Felja, I.; Herndl, G.J. (2020). Dynamics of environmental conditions during the decline of a Cymodocea nodosa meadow. Biogeosciences 17(12): 3299-3315.
    Najdek, M.; Korlevic, M.; Paliaga, P.; Markovski, M.; Ivancic, I.; Ivesa, L.; Felja, I.; Herndl, G.J. (2020). Effects of the invasion of Caulerpa cylindracea in a Cymodocea nodosa meadow in the northern Adriatic Sea. Front. Mar. Sci. 23: 602005.
    Niemann, H. (2020). Mud volcano biogeochemistry, in: Wilkes, H. (Ed.) Hydrocarbons, oils and lipids: diversity, origin, chemistry and fate. Handbook of hydrocarbon and lipid microbiology. . .
    Oakes, J.M.; Riekenberg, P.M.; Eyre, B.D. (2020). Assimilation and short‐term processing of microphytobenthos nitrogen in intertidal sediments. Limnol. Oceanogr. 65(10): 2377-2389.
    Ozuolmez, D.; Moore, E.K.; Hopmans, E.C.; Sinninghe Damsté, J.S; Stams, A.J.M.; Plugge, C.M. (2020). Butyrate conversion by sulfate-reducing and methanogenic communities from anoxic sediments of Aarhus Bay, Denmark. Microorganisms 8(4): 606.
    Peng, P.; Goris, T.; Lu, Y.; Nijsse, B.; Burrichter, A.; Schleheck, D.; Koehorst, K.J.; Liu, J.; Sipkema, D.; Sinninghe Damsté, J.S (2020). Organohalide-respiring Desulfoluna species isolated from marine environments. ISME J. 14: 815-827.
    Philippart, K.; Blauw, A.; Bolhuis, H.; Brandenburg, K.; Brussaard, C.; Gerkema, T.; Herman, P.; Hommersom, A.; Jacobs, P.; Laanen, M.; van Leeuwe, M.A.; van den Oever, A.; Peters, S.; Philippart, M.; Pitarch, J.; Prins, T.; Ruddick, K.; Spaias, L.; van de Waal, D.; Van der Zande, D.; Zuur, A. (2020). Quick scan zeeschuim. NIOZ/Bureau Waardenburg/Deltares/Highland Statistics/CNR/KBIN/NIOO-KNAW/Rijkswaterstaat (RWS-WVL)/Technische Universiteit Delft/Universiteit van Amsterdam/Universiteit Utrecht/Rijksuniversiteit Groningen/Water Insight BV: Texel. 51 pp.
    Pieper, C.; Martins, A.; Zettler, E.R.; Loureiro, C.M.; Onink, V.; Heikkilä, A.; Epinoux, A.; Edson, E.; Donnarumma, V.; de Vogel, F.A.; Law, K.L.; Amaral-Zettler, L. (2020). INTO THE MED: Searching for microplastics from space to deep-sea, in: Cocca, M. et al. Proceedings of the 2nd International Conference on Microplastic Pollution in the Mediterranean Sea. Springer Water, : pp. 129-138.
    Pinto, M.; Polania Zenner, P.; Langer, T.M.; Harrison, J.; Simon, M.; Varela, M.M.; Herndl, G.J. (2020). Putative degraders of low‐density polyethylene‐derived compounds are ubiquitous members of plastic‐associated bacterial communities in the marine environment. Environ. Microbiol. 22(11): 4779-4793.
    Popall, R.M.; Bolhuis, H.; Muyzer, G.; Sánchez-Román, M. (2020). Stromatolites as biosignatures of atmospheric oxygenation: Carbonate biomineralization and UV-C resilience in a Geitlerinema sp. - dominated culture. Front. Microbiol. 11: article 948.
    Quirós‐Collazos, L.; Calvo, E.; Schouten, S.; Van der Meer, M.T.J.; Rodrigo-Gamiz, M.; Pena, L.D.; Cacho, I.; Pelejero, C. (2020). Controls on primary productivity in the Eastern Equatorial Pacific, east of the Galapagos islands, during the penultimate deglaciation. Mar. Biol. (Berl.) 167(5).
    Rambo, I.M.; Dombrowski, N.; Constant, L.; Erdner, D.; Baker, B.J. (2020). Metabolic relationships of uncultured bacteria associated with the microalgae Gambierdiscus. Environ. Microbiol. 22(5): 1764-1783.
    Reiche, S. (2020). The impact of diagenesis and sequestration on long-chain diols and related indicies. PhD Thesis. University of Utrecht: Utrecht. ISBN 9789463326490. 127 pp.
    Reysenbach, A.-L.; St. John, E.; Meneghin, J.; Flores, G.E.; Podar, M.; Dombrowski, N.; Spang, A.; L'Haridon, S.; Humphris, S.E.; De Ronde, C.E.J.; Caratori-Tontini, F.; Tivey, M.; Stucker, V.K.; Stewart, L.C.; Diehl, A.; Bach, W. (2020). Complex subsurface hydrothermal fluid mixing at a submarine arc volcano supports distinct and highly diverse microbial communities. Proc. Natl. Acad. Sci. U.S.A. 117(51): 32627-32638.
    Riekenberg, P.M.; Oakes, J.M.; Eyre, B.D. (2020). Shining light on priming in euphotic sediments: nutrient enrichment stimulates export of stored organic matter. Environ. Sci. Technol. 54(18): 11165-11172.
    Riekenberg, P.M.; Oakes, J.M.; Eyre, B.D. (2020). A shift in the pool of retained microphytobenthos nitrogen under enhanced nutrient availability. Wat. Res. 187: 116438.
    Riekenberg, P.M.; van der Meer, M.T.J.; Schouten, S. (2020). Practical considerations for improved reliability and precision during determination of δ15N values in amino acids using a single combined oxidation-reduction reactor. Rapid Comm. Mass Spectrom. 34(14): e8797.
    Roach, T.N.F.; Little, M.; Arts; Huckeba; Haas, A.F.; George; Quinn, R.A.; Cobián-Güemes; Naliboff, D.S.; Silveira, C.B.; Vermeij, M.J.A.; Kelly; Dorrestein, P.C.; Rohwer, F. (2020). A multiomic analysis of in situ coral-turf algal interactions. Proc. Natl. Acad. Sci. U.S.A. 117(24): 13588-13595.
    Ruan, Y.; Mohtadi, M.; Dupont, L.M.; Hebbeln, D.; Kaars, S.; Hopmans, E.C.; Schouten, S.; Hyer, E.J.; Schefuß, E. (2020). Interaction of fire, vegetation, and climate in tropical ecosystems: A multiproxy study over the past 22,000 years. Global Biogeochem. Cycles 34(11): e2020GB006677.
    Saidi-Mehrabad, A.; Kits, D.K.; Kim, J.-J.; Tamas, I.; Schumann, P.; Khadka, R.; Strilets, T.; Smirnova, A.V.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S; Dunfield, P.F. (2020). Methylicorpusculum oleiharenae gen. nov., sp. nov., an aerobic methanotroph isolated from an oil sands tailings pond. Int. J. Syst. Evol. Microbiol. 70(4): 2499-2508.
    Sánchez Barranco, V.; van der Meer, M.T.J.; Kagami, M.; Van den Wyngaert, S.; Van de Waal, D.B.; Van Donk, E.; Gsell, A.S. (2020). Trophic position, elemental ratios and nitrogen transfer in a planktonic host–parasite–consumer food chain including a fungal parasite. Oecologia 194: 541-554.
    Scasso, R.A.; Prámparo, M.B.; Vellekoop, J.; Franzosi, C.; Castro, L.N.; Sinninghe Damsté, J.S (2020). A high-resolution record of environmental changes from a Cretaceous-Paleogene section of Seymour Island, Antarctica. Palaeogeogr. Palaeoclimatol. Palaeoecol. 555: 109844.
    Schlundt, C.; Mark Welch, J.L.; Knochel, A.M.; Zettler, E.R.; Amaral-Zettler, L.A. (2020). Spatial structure in the “Plastisphere”: Molecular resources for imaging microscopic communities on plastic marine debris. Mol. Ecol. Resour. 20(3): 620-634.
    Schroeter, N.; Lauterbach, S.; Stebich, M.; Kalanke, J.; Mingram, J.; Yildiz, C.; Schouten, S.; Gleixner, G. (2020). Biomolecular evidence of early human occupation of a high-altitude site in Western Central Asia during the Holocene. Front. Earth Sci. 8: article 20.
    Schroeter, N.; Toney, J.L.; Lauterbach, S.; Kalanke, J.; Schwarz, A.; Schouten, S.; Gleixner, G. (2020). How to deal with multi-proxy data for paleoenvironmental reconstructions: Applications to a Holocene lake sediment record from the Tian Shan, Central Asia. Front. Earth Sci. 8: article 353.
    Schwartz-Narbonne, R.; Schaeffer, P.; Hopmans, E.C.; Schenesse, M.; Alex Charlton, E.; Martin Jones, D.; Sinninghe Damsté, J.S.; Farhan Ul Haque, M.; Jetten, M.S.M.; Lengger, S.K. (2020). A unique bacteriohopanetetrol stereoisomer of marine anammox. Org. Geochem. 143: 103994.
    Sert, M.F.; D’Andrilli, J.; Gründger, F.; Niemann, H.; Granskog, M.A.; Pavlov, A.K.; Ferré, B.; Silyakova, A. (2020). Compositional differences in dissolved organic matter between Arctic cold seeps versus non-seep sites at the Svalbard Continental Margin and the Barents Sea. Front. Earth Sci. 8: 552731.
    Sharifan, H. (2020). Mechanistic insight on transfer rate of the polar organic compounds through the polyethersulfone membrane. Environ. Monit. Assess. 192(6): Article number: 344.
    Silyakova, A.; Jansson, P.G.; Serov, P.; Ferré, B.; Pavlov, A.K.; Hattermann, T.; Graves, C.A.; Platt, S.M.; Myhre, C.L.; Gründger, F.; Niemann, H. (2020). Physical controls of dynamics of methane venting from a shallow seep area west of Svalbard. Cont. Shelf Res. 194: 104030.
    Simon, M.H.; Ziegler, M.; Barker, S.; van der Meer, M.T.J.; Schouten, S.; Hall, I.R. (2020). A late Pleistocene dataset of Agulhas Current variability. Scientific Data 7: 385.
    Sluijs, A.; Frieling, J.; Inglis, G.N.; Nierop, K.G.J.; Peterse, F; Sangiorgi, F.; Schouten, S. (2020). Late Paleocene–early Eocene Arctic Ocean sea surface temperatures: reassessing biomarker paleothermometry at Lomonosov Ridge. Clim. Past 16(6): 2381-2400.
    Stairs, C.W.; Sharamshi, J.E.; Tamarit, D.; Eme, L.; Jorgensen, S.L.; Spang, A.; Ettema, T.J.G. (2020). Chlamydial contribution to anaerobic metabolism during eukaryotic evolution. Science Advances 6(35): eabb7258.
    Steen, A.D.; Kusch, S.; Abdulla, H.A.; Cakic, N.; Coffinet, S.; Dittmar, T.; Fulton, J.M.; Galy, V.; Hinrichs, K.-U.; Ingalls, A.E.; Koch, B.P.; Kujawinski, E.B.; Liu, Z.; Osterholz, H.; Rush, D.; Seidel, M.; Sepúlveda, J.; Wakeham, S.G. (2020). Analytical and Computational Advances, Opportunities, and Challenges in Marine Organic Biogeochemistry in an Era of “Omics”. Front. Mar. Sci. 7: article 718.
    Steiner, P.A.; Geijo, J.; Fadeev, E.; Obiol, A.; Sintes, E.; Rattei, T.; Herndl, G.J. (2020). Functional seasonality of free-living and particle-associated prokaryotic communities in the coastal Adriatic Sea. Front. Microbiol. 11: 584222.
    Su, G.; Zopfi, J.; Yao, H.; Steinle, L.; Niemann, H.; Lehmann, M.F. (2020). Manganese/iron‐supported sulfate‐dependent anaerobic oxidation of methane by archaea in lake sediments. Limnol. Oceanogr. 65(4): 863-875.
    Suominen, S. (2020). The role of microorganisms in the cycling of organic matter in anoxic marine environments. A culture-independent approach. PhD Thesis. Utrecht University: Utrecht. ISBN 978-94-6332-643-8.
    Theroux, S.; Huang, Y.; Toney, J.L.; Andersen, R.; Nyren, P.; Bohn, R.; Salacup, J.; Murphy, L.; Amaral-Zettler, L. (2020). Successional blooms of alkenone‐producing haptophytes in Lake George, North Dakota: Implications for continental paleoclimate reconstructions. Limnol. Oceanogr. 65(2): 413-425.
    Thomson, B.; Wenley, J.; Lockwood, S.; Twigg, I.; Currie, K.; Herndl, G.J.; Hepburn, C.D.; Baltar, F. (2020). Relative importance of phosphodiesterase vs. phosphomonoesterase (alkaline phosphatase) activities for dissolved organic phosphorus hydrolysis in epi- and mesopelagic waters. Front. Earth Sci. 8: 560893.
    Tinta, T.; Zhao, Z.; Escobar, A.; Klun, K.; Bayer, B.; Amano, C.; Bamonti, L.; Herndl, G.J. (2020). Microbial processing of jellyfish detritus in the ocean. Front. Microbiol. 11: 590995.
    Treude, T.; Krause, S.; Steinle; Burwicz; Hamdan, L. J.; Niemann, H.; Feseker, T.; Liebetrau, V.; Krastel, S.; Berndt, C. (2020). Biogeochemical consequences of nonvertical methane transport in sediment offshore northwestern Svalbard. JGR: Biogeosciences 125(3).
    van Bleijswijk, J.D.L.; Engelmann, J.C.; Klunder, L.; Witte, H.J.; Witte, J.IJ.; van der Veer, H.W. (2020). Analysis of a coastal North Sea fish community: Comparison of aquatic environmental DNA concentrations to fish catches. Environmental DNA 2(4): 429-445.
    van Bree, L.G.J.; Peterse, F.; Baxter, A.J.; De Crop, W.; van Grinsven, S.; Villanueva, L.; Verschuren, D.; Sinninghe Damsté, J.S (2020). Seasonal variability and sources of in situ brGDGT production in a permanently stratified African crater lake. Biogeosciences 17(21): 5443-5463.
    van der Graaf, C.M.; Sánchez-España, J.; Yusta, I.; Ilin, A.; Shetty, S.A.; Bale, N.J.; Villanueva, L.; Stams, A.J.M.; Sánchez-Andrea, I. (2020). Biosulfidogenesis mediates natural attenuation in acidic mine pit lakes. Microorganisms 8(9): 1275.
    van der Graaf; Sánchez-España; Yusta; Ilin; Shetty; Bale, N.J.; Villanueva, L.; Stams, A.J.M.; Sánchez-Andrea, I. (2020). Biosulfidogenesis mediates natural attenuation in acidic mine pit lakes. Microorganisms 8(9): 1275.
    van Duyl, F.C.; Lengger, S.K.; Schouten, S.; Lundälv, T.; van Oevelen, D.; Müller, C.E. (2020). Dark CO2 fixation into phospholipid-derived fatty acids by the cold-water coral associated sponge Hymedesmia (Stylopus) coriacea (Tisler Reef, NE Skagerrak). Mar. Biol. Res. 16(1): 1-17.
    van Duyl, F.C.; Meesters, E.H. (2020). Cruise report RV Pelagia 64PE465 : Sinkhole expedition, 5 December - 18 December 2019 Guadeloupe-Guadeloupe. NIOZ Royal Institute for Sea Research: Texel. 79 pp.
    van Grinsven, S. (2020). Microorganisms and electron acceptors affecting methane oxidation in freshwater and marine systems. PhD Thesis. Utrecht University: Utrecht. ISBN 978-94-6332-631-5. 182 pp.
    van Grinsven, S.; Sinninghe Damsté, J.S.; Harrison, J.; Polerecky, L.; Villanueva, L. (2021). Nitrate promotes the transfer of methane‐derived carbon from the methanotroph Methylobacter sp. to the methylotroph Methylotenera sp. in eutrophic lake water. Limnol. Oceanogr. 66(3): 878-891.
    van Grinsven, S.; Sinninghe Damsté, J.S; Abdala Asbun, A.; Engelmann, J.C.; Harrison, J.; Villanueva, L. (2020). Methane oxidation in anoxic lake water stimulated by nitrate and sulfate addition. Environ. Microbiol. 22(2): 766-782.
    van Grinsven, S.; Sinninghe Damsté, J.S; Harrison, J.; Villanueva, L. (2020). Impact of electron acceptor availability on methane-influenced microorganisms in an enrichment culture obtained from a stratified lake. Front. Microbiol. 11: article 715.
    van Grinsven, S.; Sinninghe Damsté, J.S; Villanueva, L. (2020). Assessing the effect of humic substances and Fe(III) as potential electron acceptors for anaerobic methane oxidation in a marine anoxic system. Microorganisms 8(9): 1288.
    van Vliet, D.M.; Lin; Bale, N.J.; Koenen, M.; Villanueva, L.; Stams, A.J.M.; Sánchez-Andrea, I. (2020). Pontiella desulfatans gen. nov., sp. nov., and Pontiella sulfatireligans sp. nov., two marine anaerobes of the Pontiellaceae fam. nov. producing sulfated glycosaminoglycan-like exopolymers. Microorganisms 8(6): 920.
    van Walraven, L.; van Bleijswijk, J.; van der Veer, H.W. (2020). Here are the polyps: in situ observations of jellyfish polyps and podocysts on bivalve shells. PeerJ 8: e9260.
    van Winden, J.F.; Talbot, H.M.; Reichart, G.-J.; McNamara, N.P.; Benthien, A.; Sinninghe Damsté, J.S. (2020). Influence of temperature on the δ13C values and distribution of methanotroph‐related hopanoids in Sphagnum‐dominated peat bogs. Geobiol. 18(4): 497-507.
    Weinbauer, M.; Griebler, C.; van Aken, H.M.; Herndl, G. (2020). Viral infection of prokaryotic plankton during early formation of the North Atlantic Deep Water. Aquat. Microb. Ecol. 84: 175-189.
    Weiss, G.M.; Massalska, B.; Hennekam, R.; Reichart, G.-J.; Sinninghe Damsté, J.S; Schouten, S.; van der Meer, M.T.J. (2020). Alkenone distributions and hydrogen isotope ratios show changes in haptophyte species and source water in the Holocene Baltic Sea. Geochem. Geophys. Geosyst. 21(2): e2019GC008751.
    Welsh, J.E.; Steenhuis, P.; de Moraes, K.R.; van der Meer, J.; Thieltges, D.W.; Brussaard, C.P.D. (2020). Marine virus predation by non-host organisms. NPG Scientific Reports 10(1): 9 pp.
    Witkowski, C.R. (2020). Reconstructing past atmospheric CO2 levels from the stable carbon isotopic composition of general algal biomarkers. PhD Thesis. Utrecht University: Utrecht. ISBN 978-94-6380-644-2.
    Witkowski, C.R.; van der Meer, M.T.J.; Blais, B.; Sinninghe Damsté, J.S.; Schouten, S. (2020). Algal biomarkers as a proxy for pCO2: Constraints from late quaternary sapropels in the eastern Mediterranean. Org. Geochem. 150: 104123.
    Witkowski, C.R.; van der Meer, M.T.J.; Smit, N.T.; Sinninghe Damsté, J.S.; Schouten, S. (2020). Testing algal-based pCO2 proxies at a modern CO2 seep (Vulcano, Italy). NPG Scientific Reports 10(1): 10508.
    Yadav, S.; Villanueva, L.; Bale, N.; Koenen, M.; Hopmans, E.C.; Sinninghe Damsté, J.S (2020). Physiological, chemotaxonomic and genomic characterization of two novel piezotolerant bacteria of the family Marinifilaceae isolated from sulfidic waters of the Black Sea. Syst. Appl. Microbiol. 43(5): 126122.
    Yao, H.; Niemann, H.; Panieri, G. (2020). Multi-proxy approach to unravel methane emission history of an Arctic cold seep. Quat. Sci. Rev. 244: 106490.
    Zabelskii, D.; Alekseev, A.; Kovalev, K.; Rankovic, V.; Balandin, T.; Soloviov, D.; Bratanov, D.; Savelyeva, E.; Podolyak, E.; Volkov, D.; Vaganova, S.; Astashkin, R.; Chizhov, I.; Yutin, N.; Rulev, M.; Popov, A.; Eria-Oliveira, A.S.; Rokitskaya, T.; Mager, T.; Antonenko, Y.; Rosselli, R.; Armeev, G.; Shaitan, K.; Vivaudou, M.; Büldt, G.; Rogachev, A.; Rodriguez-Valera, F.; Kirpichnikov, M.; Moser, T.; Offenhäusser, A.; Willbold, D.; Koonin, E.; Bamberg, E.; Gordeliy, V. (2020). Viral rhodopsins 1 are an unique family of light-gated cation channels. Nature Comm. 11(1): 5705.
    Zettler, E.R.; Amaral-Zettler, L.A. (2020). The (Un)Natural History of the “Plastisphere,” A New Marine Ecosystem, in: Streit-Bianchi, M. et al. Mare Plasticum - The Plastic Sea. pp. 73-88.
    Zhang, Y.; Qin, W.; Hou, L.; Zakem, E.J.; Wan, X.; Zhao, Z.; Liu, L.; Hunt, K.A.; Jiao, N.; Kao, S.-J.; Tang, K.; Xie, X.; Shen, J.; Li, Y.; Chen, M.; Dai, X.; Liu, C.; Deng, W.; Dai, M.; Ingalls, A.E.; Stahl, D.A.; Herndl, G.J. (2020). Nitrifier adaptation to low energy flux controls inventory of reduced nitrogen in the dark ocean. Proc. Natl. Acad. Sci. U.S.A. 117(9): 4823-4830.
    Zhao, Z.; Baltar, F.; Herndl, G. (2020). Linking extracellular enzymes to phylogeny indicates a predominantly particle-associated lifestyle of deep-sea prokaryotes. Science Advances 6(16): eaaz4354.
    Zindorf, M.; Rush, D.; Jaeger, J.; Mix, A.C.; Penkrot, M.L.; Schnetger, B.; Sidgwick, F.R.; Talbot, H.M.; van der Land, C.; Wagner, T.; Walczak, M.H.; März, C. (2020). Reconstructing oxygen deficiency in the glacial Gulf of Alaska: Combining biomarkers and trace metals as paleo-redox proxies. Chem. Geol. 558: 119864.
  • 2019
    Åström, E.K.L.; Carroll, M.; Sen, A.; Niemann, H.; Ambrose, W.G.; Lehmann, M.F.; Carroll, J. (2019). Chemosynthesis influences food web and community structure in high-Arctic benthos. Mar. Ecol. Prog. Ser. 629: 19-42.
    Bäckström, D.; Yutin, N.; Jorgensen, S.L.; Dharamshi, J.; Homa, F.; Zaremba-Niedwiedzka, K.; Spang, A.; Wolf, Y.I.; Koonin, E.V.; Ettema, T.J.G. (2019). Virus genomes from deep sea sediments expand the ocean megavirome and support independent origins of viral gigantism. Mbio 10(2): e02497-18.
    Bale, N.J.; Hennekam, R.; Hopmans, E.C.; Dorhout, D.; Reichart, G.-J.; Van der Meer, M.T.J.; Villareal, T.A.; Sinninghe Damsté, J.S; Schouten, S. (2019). Biomarker evidence for nitrogen-fixing cyanobacterial blooms in a brackish surface layer in the Nile River plume during sapropel deposition. Geology (Boulder Colo.) 47(11): 1088-1092.
    Bale, N.J.; Palatinszky, M.; Rijpstra, W.I.C.; Herbold, C.W.; Wagner, M.; Sinninghe Damsté, J.S (2019). Membrane lipid composition of the moderately thermophilic ammonia-oxidizing archaeon “Candidatus Nitrosotenuis uzonensis” at different growth temperatures. Appl. Environ. Microbiol. 85(20).
    Bale, N.J.; Rijpstra, W.I.C.; Sahonero Canavesi, D.X.; Oshkin, I.Y.; Belova, S.E.; Dedysh, S.N.; Sinninghe Damsté, J.S (2019). Fatty acid and hopanoid adaption to cold in the methanotroph Methylovulum psychrotolerans. Front. Microbiol. 10: article 589.
    Bale, N.J.; Sorokin, D.Y.; Hopmans, E.C.; Koenen, M.; Rijpstra, W.I.C.; Villanueva, L.; Wienk, H.; Sinninghe Damsté, J.S. (2019). New insights into the polar lipid composition of extremely halo(alkali)philic euryarchaea from hypersaline lakes. Front. Microbiol. 10: article 377.
    Baltar, F.; Bayer, B.; Bednaršek, N.; Deppeler, S.; Escribano, R.; Gonzalez, C.E.; Hansman, R.L.; Mishra, R.K.; Moran, M.A.; Repeta, D.J. (2019). Towards integrating evolution, metabolism, and climate change studies of marine ecosystems. Trends Ecol. Evol. 34(11): 1022-1033.
    Baltar, F.; Herndl, G.J. (2019). Ideas and perspectives: Is dark carbon fixation relevant for oceanic primary production estimates? Biogeosciences 16(19): 3793-3799.
    Balzano, S.; Villanueva, L.; de Bar, M.; Sahonero Canavesi, D.X.; Yildiz, C.; Engelmann, J.C.; Maréchal, E.; Lupette, J.; Sinninghe Damsté, J.S.; Schouten, S. (2019). Biosynthesis of long chain alkyl diols and long chain alkenols in Nannochloropsis spp. (Eustigmatophyceae). Plant Cell Physiol. 60(8): 1666-1682.
    Bart, M.C.; de Vet, S.J.; de Bakker, D.M.; Alexander, B.E.; Van Oevelen, D.; van Loon, E.E.; van Loon, J.W.A.; de Goeij, J.M. (2019). Spiculous skeleton formation in the freshwater sponge Ephydatia fluviatilis under hypergravity conditions. PeerJ 6: 6055.
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    van Vliet, D.M.; Palakawong Na Ayudthaya, S.; Diop, S.; Villanueva, L.; Stams, A.J.M.; Sánchez-Andrea, I. (2019). Anaerobic degradation of sulfated polysaccharides by two novel Kiritimatiellales strains isolated from Black Sea sediment. Front. Microbiol. 10: 253.
    Visser, P.M.; Meesters, E.H.; van Duyl, F.C. (Ed.) (2019). Cruise report RV Pelagia 64PE430 : Bottom topography, groundwater discharge and cyanobacterial mats of mesophotic reefs, 25 January - 2 February 2018 Curaçao-Bonaire-Aruba (NICO expedition leg 3). NIOZ Royal Institute for Sea Research: Texel. 79 pp.
    Wang, F.; Liu, Y.; Su; Osinski, T.; de Oliveira; Conway; Schouten, S.; Krupovic, M.; Prangishvili, D.; Egelman, E.H. (2019). A packing for A-form DNA in an icosahedral virus. Proc. Natl. Acad. Sci. U.S.A. 116(45): 22591-22597.
    Wang, K.J.; O'Donnell; Longo, W.M.; Amaral-Zettler, L.A.; Li, G.; Yao; Huang, Y. (2019). Group I alkenones and Isochrysidales in the world’s largest maar lakes and their potential paleoclimate applications. Org. Geochem. 138: 103924.
    Webb, A.E.; Pomponi, S.A.; van Duyl, F.C.; Reichart, G.-J.; de Nooijer, L.J. (2019). pH regulation and tissue coordination pathways promote calcium carbonate bioerosion by excavating sponges. NPG Scientific Reports 9(1): 758.
    Wegley Kelly, L.; Nelson, C.E.; Haas, A.F.; Naliboff, D.S.; Calhoun, S.; Carlson, C.A.; Edwards; Fox, M.G.; Hatay, M.; Johnson, M.D.; Kelly, E.L.A.; Lim, Y.W.; Macherla, S.; Quinlan, Z.A.; Silva, G.G.Z.; Vermeij, M.J.A.; Zgliczynski, B.; Sandin, S.A.; Smith; Rohwer (2019). Diel population and functional synchrony of microbial communities on coral reefs. Nature Comm. 10(1): 1691.
    Weiss, G.M. (2019). Hydrogen isotope composition of algal chemical fossils: a tool for reconstructing paleo sea surface salinity. PhD Thesis. Utrecht University: Utrecht. ISBN 978-94-6375-466-8. 150 pp.
    Weiss, G.M.; de Bar, M.W.; Stolwijk, D.J.; Schouten, S.; Sinninghe Damsté, J.S.; van der Meer, M.T.J. (2019). Paleosensitivity of hydrogen isotope ratios of long‐chain alkenones to salinity changes at the Chile Margin. Paleoceanography and Paleoclimatology 34(6): 978-989.
    Weiss, G.M.; Roepert, A.; Middelburg, J.J.; Schouten, S.; Sinninghe Damsté, J.S; van der Meer, M.T.J. (2019). Hydrogen isotope fractionation response to salinity and alkalinity in a calcifying strain of Emiliania huxleyi. Org. Geochem. 134: 62-65.
    Weiss, G.M.; Schouten, S.; Sinninghe Damsté, J.S; Van der Meer, M.T.J. (2019). Constraining the application of hydrogen isotopic composition of alkenones as a salinity proxy using marine surface sediments. Geochim. Cosmochim. Acta 250: 34-48.
    Willard, D.A.; Donders, T.H.; Reichgelt; Greenwood, D.R.; Sangiorgi, F.; Peterse, F.; Nierop, K.G.J.; Frieling, J.; Schouten, S.; Sluijs, A. (2019). Arctic vegetation, temperature, and hydrology during Early Eocene transient global warming events. Global Planet. Change 178: 139-152.
    Witkowski, C.R.; Agostini, S.; Harvey, B.P.; van der Meer, M.T.J.; Sinninghe Damsté, J.S.; Schouten, S. (2019). Validation of carbon isotope fractionation in algal lipids as a pCO2 proxy using a natural CO2 seep (Shikine Island, Japan). Biogeosciences 16(22): 4451-4461.
    Yao, H.; Hong, W.-L.; Panieri, G.; Sauer, S.; Torres, M.E.; Lehmann, M.F.; Gründger, F.; Niemann, H. (2019). Fracture-controlled fluid transport supports microbial methane-oxidizing communities at Vestnesa Ridge. Biogeosciences 16(10): 2221-2232.
  • 2018
    Alvarez-Fernandez, S.; Bach, L.T.; Taucher, J.; Riebesell, U.; Sommer, U.; Aberle, N.; Brussaard, C.P.D.; Boersma, M. (2018). Plankton responses to ocean acidification: The role of nutrient limitation. Prog. Oceanogr. 165: 11-18.
    Amaral-Zettler, L.; Schmidt, V.; Smith, K. (2018). Microbial community and potential pathogen shifts along an ornamental fish supply chain. Microorganisms 6(3): 91.
    Bale, N.J.; Hopmans, E.C.; Dorhout, D.; Stal, L.J.; Grego, M.; van Bleijswijk, J.D.L.; Sinninghe Damsté, J.S.; Schouten, S. (2018). A novel heterocyst glycolipid detected in a pelagic N2 -fixing cyanobacterium of the genus Calothrix. Org. Geochem. 123: 44-47.
    Bale, N.J.; Villareal, T.A.; Hopmans, E.C.; Brussaard, C.P.D.; Besseling, M.; Dorhout, D.; Sinninghe Damsté, J.S.; Schouten, S. (2018). C5 glycolipids of heterocystous cyanobacteria track symbiont abundance in the diatom Hemiaulus hauckii across the tropical North Atlantic. Biogeosciences 15(4): 1229-1241.
    Balzano, S.; Lattaud, J.; Villanueva, L.; Rampen, S.W.; Brussaard, C.P.D.; van Bleijswijk, J.; Bale, N.; Sinninghe Damsté, J.S.; Schouten, S. (2018). A quest for the biological sources of long chain alkyl diols in the western tropical North Atlantic Ocean. Biogeosciences 15(19): 5951-5968.
    Belova, S.E.; Ravin, N.V.; Pankratov, T.A.; Rakitin, A.L.; Ivanova, A.; Beletsky, A.V.; Mardanov, A.V.; Sinninghe Damsté, J.S.; Dedysh, S.N. (2018). Hydrolytic capabilities as a key to environmental success: chitinolytic and cellulolytic Acidobacteria from acidic sub-arctic soils and boreal peatlands. Front. Microbiol. 9: 2775.
    Belova, S.E.; Suzina, N.E.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Dedysh, S.N. (2018). Edaphobacter lichenicola sp. nov., a member of the family Acidobacteriaceae from lichen-dominated forested tundra. Int. J. Syst. Evol. Microbiol. 68(4): 1265-1270.
    Bergauer, K.; Fernàndez-Guerra, A.; Garcia, J.A.L.; Sprenger, R.R.; Stepanauskas, R.; Pachiadaki, M.G.; Jensen, O.N.; Herndl, G. (2018). Organic matter processing by microbial communities throughout the Atlantic water column as revealed by metaproteomics. Proc. Natl. Acad. Sci. U.S.A. 115(3): E400-E408.
    Besseling, M.A.; Hopmans, E.C.; Boschman, R.C.; Sinninghe Damsté, J.S.; Villanueva, L. (2018). Benthic archaea as potential sources of tetraether membrane lipids in sediments across an oxygen minimum zone. Biogeosciences 15: 4047-4064.
    Bojanowski, M.J.; Ciurej, A.; Haczewski, G.; Jokubauskas, P.; Schouten, S.; Tyszka, J.; Bijl, P.K. (2018). The Central Paratethys during Oligocene as an ancient counterpart of the present-day Black Sea: Unique records from the coccolith limestones. Mar. Geol. 403: 301-328.
    Burian, A.; Grosse, J.; Winder, M.; Boschker, H.T.S. (2018). Nutrient deficiencies and the restriction of compensatory mechanisms in copepods. Funct. Ecol. 32(3): 636-647.
    Burson, A.; Stomp, M.; Greenwell, E.; Grosse, J.; Huisman, J. (2018). Competition for nutrients and light: testing advances in resource competition with a natural phytoplankton community. Ecology 99(5): 1108-1118.
    Buttigieg, P.L.; Fadeev, E.; Bienhold, C.; Hehemann, L.; Offre, P.; Boetius, A. (2018). Marine microbes in 4D - using time series observation to assess the dynamics of the ocean microbiome and its links to ocean health. Curr. Opin. Microbiol. 43: 169-185.
    Coxall, H.K.; Huck, C.E.; Huber, M.; Lear, C.H.; Legarda-Lisarri, A.; O'Regan, M.; Sliwinska, K.K.; van de Flierdt, T.; de Boer, A.M.; Zachos, J.C.; Backman, J. (2018). Export of nutrient rich northern component water preceded early Oligocene Antarctic glaciation. Nature Geoscience 11(3): 190-196.
    Cramwinckel, M.J.; Huber, M.; Kocken, I.J.; Agnini, C.; Bijl, P.K.; Bohaty, S.M.; Frieling, J.; Goldner, A.; Hilgen, F.J.; Kip, E.L.; Peterse, F; van der Ploeg, R.; Röhl, U.; Schouten, S.; Sluijs, A. (2018). Synchronous tropical and polar temperature evolution in the Eocene. Nature (Lond.) 559(7714): 382-386.
    de Bakker, D.M.; Webb, A.E.; van den Bogaart, L.A.; van Heuven, S.M.A.C.; Meesters, E.H.; van Duyl, F.C. (2018). Quantification of chemical and mechanical bioerosion rates of six Caribbean excavating sponge species found on the coral reefs of Curaçao. PLoS One 13(5): e0197824.
    de Bar, M.W.; Stolwijk, D.J.; McManus, J.F.; Sinninghe Damsté, J.S.; Schouten, S. (2018). A Late Quaternary climate record based on long-chain diol proxies from the Chilean margin. Clim. Past 14(11): 1783-1803.
    De Corte, D.; Srivastava, A.; Koski, M.; Garcia, J.A.L.; Takaki, Y.; Yokokawa, T.; Elisabeth, N.H.; Nunoura, T.; Sintes, E.; Herndl, G.J. (2018). Metagenomic insights into zooplankton-associated bacterial communities. Environ. Microbiol. 20(2): 492-505.
    Dearing Crampton-Flood, E.; Peterse, F; Munsterman, D.; Sinninghe Damsté, J.S. (2018). Using tetraether lipids archived in North Sea Basin sediments to extract North Western European Pliocene continental air temperatures. Earth Planet. Sci. Lett. 490: 193-205.
    Dedysh, S.N.; Sinninghe Damsté, J.S. (2018). Acidobacteria. Encycl. Life Sci. (Online) January.
    Dessandier, P.-A.; Bonnin, J.; Malaizéa, B.; Lambert, C.; Tjallingii, R.; Warden, L.; Sinninghe Damsté, J.S.; Kim, J.-H (2018). Variations in benthic foraminiferal assemblages in the Tagus mud belt during the last 5700 years: Implications for Tagus River discharge. Palaeogeogr. Palaeoclimatol. Palaeoecol. 496: 225-237.
    Dijkhuizen, L.W.; Brouwer, P.; Bolhuis, H.; Reichart, G.-J.; Koppers, N.; Huettel, B.; Bolger, A.M.; Li, F.-W.; Cheng, S.; Liu, X.; Wong, G.K.-S.; Pryer, K.; Weber, A.; Bräutigam, A.; Schluepmann, H. (2018). Is there foul play in the leaf pocket? The metagenome of floating fern Azolla reveals endophytes that do not fix N2 but may denitrify. New Phytol. 217(1): 453-466.
    Dijkstra, N.; Kraal, P.; Séguret, M.J.M. ; Flores, M.R.; Gonzalez, S.; Rijkenberg, M.J.A.; Slomp, C.P. (2018). Phosphorus dynamics in and below the redoxcline in the Black Sea and implications for phosphorus burial. Geochim. Cosmochim. Acta 222: 685-703.
    Donders, T.H.; van Helmond, N.A.G.M.; Verreussel, R.; Munsterman, D.; ten Veen, J.; Speijer, R.P.; Weijers, J.W.H.; Sangiorgi, F.; Peterse, F.; Reichart, G.-J.; Sinninghe Damsté, J.S.; Lourens, L.; Kuhlmann, G.; Brinkhuis, H. (2018). Land–sea coupling of early Pleistocene glacial cycles in the southern North Sea exhibit dominant Northern Hemisphere forcing. Clim. Past 14(3): 397-411.
    Egger, M.; Riedinger, N.; Mogollón, J.M.; Jørgensen, B.B. (2018). Global diffusive fluxes of methane in marine sediments. Nature Geoscience 11(6): 421-425.
    Engelen, A.H.; Aires, T.; Vermeij, M.J.A.; Herndl, G.J.; Serrão, E.A.; Frade, P.R. (2018). Host differentiation and compartmentalization of microbial communities in the azooxanthellate cupcorals Tubastrea coccinea and Rhizopsammia goesi in the Caribbean. Front. Mar. Sci. 5: 391.
    Freeman, S.E.; Freeman, L.A.; Giorli, G.; Haas, A.F. (2018). Photosynthesis by marine algae produces sound, contributing to the daytime soundscape on coral reefs. PLoS One 13(10): e0201766.
    Glock, N.; Erdem, Z.; Wallmann, K.; Somes, C.J.; Liebetrau, V.; Schönfeld, J.; Gorb, S.; Eisenhauer, A. (2018). Coupling of oceanic carbon and nitrogen facilitates spatially resolved quantitative reconstruction of nitrate inventories. Nature Comm. 9(1): 10 pp.
    Guerrero-Cruz, S.; Cremers, G.; van Alen, T.A.; Op den Camp, H.J.M.; Jetten, M.S.M.; Rasigraf, O.; Vaksmaa, A. (2018). Response of the anaerobic methanotroph “Candidatus Methanoperedens nitroreducens” to oxygen stress. Appl. Environ. Microbiol. 84(24).
    Guerrero-Feijóo, E.; Sintes, E.; Herndl, G.J.; Varela, M.M. (2018). High dark inorganic carbon fixation rates by specific microbial groups in the Atlantic off the Galician coast (NW Iberian margin). Environ. Microbiol. 20(2): 602-611.
    Hartman, J.D.; Sangiorgi, F.; Salabarnada, A.; Peterse, F; Houben, A.J.P.; Schouten, S.; Brinkhuis, H.; Escutia, C.; Bijl, P.K. (2018). Paleoceanography and ice sheet variability offshore Wilkes Land, Antarctica – Part 3: Insights from Oligocene–Miocene TEX86-based sea surface temperature reconstructions. Clim. Past 14(9): 1275-1297.
    Hedayatkhah, A.; Cretoiu, M.S.; Emtiazi, G.; Stal, L.J.; Bolhuis, H. (2018). Bioremediation of chromium contaminated water by diatoms with concomitant lipid accumulation for biofuel production. J. Environ. Manage. 227: 313-320.
    Heimhofer, U.; Wucherpfennig, N.; Adatte, T.; Schouten, S.; Schneebeli-Hermann, E.; Gardin, S.; Keller, G.; Kentsch, S.; Kujau, A. (2018). Vegetation response to exceptional global warmth during Oceanic Anoxic Event 2. Nature Comm. 9: 3832.
    Heinzelmann, S.M.; Villanueva, L.; Lipsewers, Y.A.; Sinke-Schoen, D.; Sinninghe Damsté, J.S.; Schouten, S.; Van der Meer, M.T.J. (2018). Assessing the metabolism of sedimentary microbial communities using the hydrogen isotopic composition of fatty acids. Org. Geochem. 124: 123-132.
    Hoeksema, B.W.; Hassell, D.; Meesters, E.H.W.G.; van Duyl, F.C. (2018). Wave-swept coralliths of Saba Bank, Dutch Caribbean. Mar. Biodiv. 48(4): 2003-2016.
    Hörnlein, C.; Confurius-Guns, V.; Stal, L.J.; Bolhuis, H. (2018). Daily rhythmicity in coastal microbial mats. npj Biofilms and Microbiomes 4: 11.
    Ismail, A.; Ktari, L.; Ahmed, M.; Bolhuis, H.; Bouhaouala-Zahar, B.; Stal, L.J.; Boudabbous, A.; El Bour, M. (2018). Heterotrophic bacteria associated with the green alga Ulva rigida: identification and antimicrobial potential. J. Appl. Phycol. 30(5): 2883-2899.
    Ivancic, I.; Paliaga, P.; Pfannkuchen, M.; Djakovac, T.; Najdek, M.; Steiner, P.; Korlevic, M.; Markovski, M.; Baricevic, A.; Tankovic, M.S.; Herndl, G. (2018). Seasonal variations in extracellular enzymatic activity in marine snow-associated microbial communities and their impact on the surrounding water. FEMS Microbiol. Ecol. 94(12): 11.
    Jaeschke, A.; Rethemeyer, J.; Lappé, M.; Schouten, S.; Boeckx, P.; Schefuß, E. (2018). Influence of land use on distribution of soil n-alkane δD and brGDGTs along an altitudinal transect in Ethiopia: Implications for (paleo)environmental studies. Org. Geochem. 124: 77-87.
    Kellner, S.; Spang, A.; Offre, P.; Szöllosi; Petitjean, C.; Williams, T.A. (2018). Genome size evolution in the Archaea. Emerging Topics in Life Sciences 2(4): ETLS20180021.
    Klunder, L.; van Bleijswijk, J.; van der Veer, H. (2018). Effect of an energy turbine on fish eDNA as indicator for species composition. NIOZ-rapport, 2018(7). NIOZ: Texel. 21 pp.
    Lattaud, J.; Kirkels, F.; Peterse, F.; Freymond, C.V.; Eglinton, T.I.; Hefter, J.; Mollenhauer, G.; Balzano, S.; Villanueva, L.; van der Meer, M.T.J.; Hopmans, E.C.; Sinninghe Damsté, J.S.; Schouten, S. (2018). Long-chain diols in rivers: distribution and potential biological sources. Biogeosciences 15(13): 4147-4161.
    Lattaud, J.; Lo, L.; Huang, J.-J.; Chou, Y.-M.; Gorbarenko, S.A.; Sinninghe Damsté, J.S; Schouten, S. (2018). A comparison of Late Quaternary organic proxy-based paleotemperature records of the Central Sea of Okhotsk. Paleoceanography and Paleoclimatology 33(7): 732-744.
    Lee, D.-H.; Kim, J.-H.; Lee, Y.M.; Stadnitskaia, A.; Jin, Y.K.; Niemann, H.; Kim, Y.-G.; Shin, K.-H. (2018). Biogeochemical evidence of anaerobic methane oxidation on active submarine mud volcanoes on the continental slope of the Canadian Beaufort Sea. Biogeosciences 15(24): 7419-7433.
    Lipsewers, Y.A.; Hopmans, E.C.; Sinninghe Damsté, J.S.; Villanueva, L. (2018). Potential recycling of thaumarchaeotal lipids by DPANN Archaea in seasonally hypoxic surface marine sediments. Org. Geochem. 119: 101-109.
    Liu, Y.; Osinski, T.; Wang, F.; Krupovic, M.; Schouten, S.; Kasson, P.; Prangishvili, D.; Egelman, E.H. (2018). Structural conservation in a membrane-enveloped filamentous virus infecting a hyperthermophilic acidophile. Nature Comm. 9(1): 3360.
    Lo, L.; Belt, S.T.; Lattaud, J.; Friedrich, T.; Zeeden, C.; Schouten, S.; Smik, L.; Timmermann, A.; Cabedo-Sanz, P.; Huang, J.-J.; Zhou, L.; Ou, T.-H.; Chang, Y.-P.; Wang, L.-C.; Chou, Y.-M.; Shen, C.-C.; Chen, M.-T.; Wei, K.-Y.; Song, S.-R.; Fang, T.-H.; Gorbarenko, S.A.; Wang, W.-L.; Lee, T.-Q.; Elderfield, H.; Hodell, D.A. (2018). Precession and atmospheric CO2 modulated variability of sea ice in the central Okhotsk Sea since 130,000 years ago. Earth Planet. Sci. Lett. 488: 36-45.
    Luttikhuizen, P.C.; van den Heuvel, F.H.M.; Rebours, C.; Witte, H.J.; van Bleijswijk, J.D.L.; Timmermans, K. (2018). Strong population structure but no equilibrium yet: Genetic connectivity and phylogeography in the kelp Saccharina latissima (Laminariales, Phaeophyta). Ecol. Evol. 8(8): 4265-4277.
    Martijn, J.; Vosseberg, J.; Guy, L.; Offre, P.; Ettema, T.J. G. (2018). Deep mitochondrial origin outside the sampled alphaproteobacteria. Nature (Lond.) 557(7703): 101-105.
    Moerdijk-Poortvliet, T.C.W.; Beauchard, O.; Stal, L.J.; Boschker, H.T.S. (2018). Production and consumption of extracellular polymeric substances in an intertidal diatom mat. Mar. Ecol. Prog. Ser. 592: 77-95.
    Moerdijk-Poortvliet, T.C.W.; van Breugel, P.; Sabbe, K.; Beauchard, O.; Stal, L.J.; Boschker, H.T.S. (2018). Seasonal changes in the biochemical fate of carbon fixed by benthic diatoms in intertidal sediments. Limnol. Oceanogr. 63(2): 550-569.
    Nakajima, R.; Haas, A.F.; Silveira, C.B.; Kelly, E.L.A.; Smith, J.E.; Sandin, S.; Kelly, L.W.; Rohwer, F.; Nakatomi, N.; Kurihara, H. (2018). Release of dissolved and particulate organic matter by the soft coral Lobophytum and subsequent microbial degradation. J. Exp. Mar. Biol. Ecol. 504: 53-60.
    Narrowe, A.B.; Spang, A.; Stairs, C.W.; Caceres, E.F.; Baker, B.J.; Miller, C.S.; Ettema, T.J.G. (2018). Complex evolutionary history of translation elongation factor 2 and diphthamide biosynthesis in archaea and parabasalids. Genome Biology and Evolution 10(9): 2380-2393.
    Nausch, M.; Achterberg, E.P.; Bach, L.T.; Brussaard, C.P.D.; Crawfurd, K.J.; Fabian, J.; Riebesell, U.; Stuhr, A.; Unger, J.; Wannicke, N. (2018). Concentrations and uptake of dissolved organic phosphorus compounds in the Baltic Sea. Front. Mar. Sci. 5: 386.
    Noor, L.H.W.; van der Kroef, D.A.; Wattam, D.; Pinnock, M.; van Rossum, R.; Smit, M.G.; Brussaard, C.P.D. (2018). Innovative transportable laboratories for polar science. Polar Rec. 54(1): 18-28.
    Piedade, G.; Wesdorp, E.; Montenegro-Borbolla, E.; Maat, D.; Brussaard, C. (2018). Influence of irradiance and temperature on the virus MpoV-45T infecting the Arctic picophytoplankter micromonas polaris. Viruses 10(12): 676.
    Raina, J.-B.; Eme, L.; Pollock, F.J.; Spang, A.; Archibald, J.M.; Williams, T.A. (2018). Symbiosis in the microbial world: from ecology to genome evolution. Biology Open 7(2): bio032524.
    Reiche, S.; Rampen, S.W.; Dorhout, D.J.C.; Sinninghe Damsté, J.S.; Schouten, S. (2018). The impact of oxygen exposure on long-chain alkyl diols and the long chain diol index (LDI) – a long-term incubation study. Org. Geochem. 124: 238-246.
    Roach, T.N.F.; Salamon, P.; Nulton, J.; Andresen, B.; Felts, B.; Haas, A.; Calhoun, S.; Robinett, N.; Rohwer, F. (2018). Application of finite-time and control thermodynamics to biological processes at multiple scales. Journal of Non-Equilibrium Thermodynamics 43(3): 193-210.
    Rochman, F.; Kim, J.-J.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Schumann, P.; Verbeke, T.J.; Dunfield, P.F. (2018). Oleiharenicola alkalitolerans gen. nov., sp. nov., a new member of the phylum Verrucomicrobia isolated from an oilsands tailings pond. Int. J. Syst. Evol. Microbiol. 68(4): 1078-1084.
    Romera-Castillo, C.; Pinto, M.; Langer, T.M.; Alvarez-Salgado, X.A.; Herndl, G. (2018). Dissolved organic carbon leaching from plastics stimulates microbial activity in the ocean. Nature Comm. 9(1): 7 pp.
    Rush, D.; Erdem, Z. (2018). Cruise 64PE434: NICO Leg 7 GoMex: R/V Pelagia, 11-03-2018 to 04-04-2018, Philipsburg, Sint Maarten – Nassau, Bahamas. NIOZ: Texel. 63 pp.
    Russell, J.M.; Hopmans, E.C.; Loomis, S.E.; Liang, J.; Sinninghe Damsté, J.S. (2018). Distributions of 5- and 6-methyl branched glycerol dialkyl glycerol tetraethers (brGDGTs) in East African lake sediment: Effects of temperature, pH, and new lacustrine paleotemperature calibrations. Org. Geochem. 117: 56-69.
    Sangiorgi, F.; Bijl, P.K.; Passchier, S.; Salzmann, U.; Schouten, S.; McKay, R.M.; Cody, R.D.; Pross, J.; van de Flierdt, T.; Bohaty, S.M.; Levy, R.; Williams, T.; Escutia, C.; Brinkhuis, H. (2018). Southern Ocean warming and Wilkes Land ice sheet retreat during the mid-Miocene. Nature Comm. 9(1): 317.
    Schlitzer,R.; Anderson,R.F.; Dodas,E.M.; Lohan,M.; Geibert,W.; Tagliabue,A.; Bowie,A.; Jeandel,C.; Maldonado,M.T.; Landing,W.M.; Cockwell,D.; Abadie,C.; Abouchami,W.; Achterberg,E.P.; Agather,A.; Aguliar-Islas,A.; van Aken,H.M.; Andersen,M.; Archer,C.; Auro,M.; de Baar,H.J.; Baars,O.; Baker,A.R.; Bakker,K.; Basak,C.; Baskaran,M.; Bates,N.R.; Bauch,D.; van Beek,P.; Behrens,M.K.; Black,E.; Bluhm,K.; Bopp,L.; Bouman,H.; Bowman,K.; Bown,J.; Boyd,P.; Boye,M.; Boyle,E.A.; Branellec,P.; Bridgestock,L.; Brissebrat,G.; Browning,T.; Bruland,K.W.; Brumsack,H.-J.; Brzezinski,M.; Buck,C.S.; Buck,K.N.; Buesseler,K.; Bull,A.; Butler,E.; Cai,P.; Mor,P.C.; Cardinal,D.; Carlson,C.; Carrasco,G.; Casacuberta,N.; Casciotti,K.L.; Castrillejo,M.; Chamizo,E.; Chance,R.; Charette,M.A.; Chaves,J.E.; Cheng,H.; Chever,F.; Christl,M.; Church,T.M.; Closset,I.; Colman,A.; Conway,T.M.; Cossa,D.; Croot,P.; Cullen,J.T.; Cutter,G.A.; Daniels,C.; Dehairs,F.; Deng,F.; Dieu,H.T.; Duggan,B.; Dulaquais,G.; Dumousseaud,C.; Echegoyen-Sanz,Y.; Edwards,R.L.; Ellwood,M.; Fahrbach,E.; Fitzsimmons,J.N.; Russell Flegal,A.; Fleisher,M.Q.; van de Flierdt,T.; Frank,M.; Friedrich,J.; Fripiat,F.; Fröllje,H.; Galer,S.J.G.; Gamo,T.; Ganeshram,R.S.; Garcia-Orellana,J.; Garcia-Solsona,E.; Gault-Ringold,M.; George,E.; Gerringa,L.J.A.; Gilbert,M.; Godoy,J.M.; Goldstein,S.L.; Gonzalez,S.R.; Grissom,K.; Hammerschmidt,C.; Hartman,A.; Hassler,C.S.; Hathorne,E.C.; Hatta,M.; Hawco,N.; Hayes,C.T.; Heimbürger,L.-E.; Helgoe,J.; Heller,M.; Henderson,G.M.; Henderson,P.B.; van Heuven,S.; Ho,P.; Horner,T.J.; Hsieh,Y.-T.; Huang,K.-F.; Humphreys,M.P.; Isshiki,K.; Jacquot,J.E.; Janssen,D.J.; Jenkins,W.J.; John,S.; Jones,E.M.; Jones,J.L.; Kadko,D.C.; Kayser,R.; Kenna,T.C.; Khondoker,R.; Kim,T.; Kipp,L.; Klar,J.K.; Klunder,M.; Kretschmer,S.; Kumamoto,Y.; Laan,P.; Labatut,M.; Lacan,F.; Lam,P.J.; Lambelet,M.; Lamborg,C.H.; Le Moigne,F.A.C.; Le Roy,E.; Lechtenfeld,O.J.; Lee,J.-M.; Lherminier,P.; Little,S.; López-Lora,M.; Lu,Y.; Masque,P.; Mawji,E.; Mcclain,C.R.; Measures,C.; Mehic,S.; Barraqueta,J.-L.M.; van der Merwe,P.; Middag,R.; Mieruch,S.; Milne,A.; Minami,T.; Moffett,J.W.; Moncoiffe,G.; Moore,W.S.; Morris,P.J.; Morton,P.L.; Nakaguchi,Y.; Nakayama,N.; Niedermiller,J.; Nishioka,J.; Nishiuchi,A.; Noble,A.; Obata,H.; Ober,S.; Ohnemus,D.C.; van Ooijen,J.; O'Sullivan,J.; Owens,S.; Pahnke,K.; Paul,M.; Pavia,F.; Pena,L.D.; Peters,B.; Planchon,F.; Planquette,H.; Pradoux,C.; Puigcorbé,V.; Quay,P.; Queroue,F.; Radic,A.; Rauschenberg,S.; Rehkämper,M.; Rember,R.; Remenyi,T.; Resing,J.A.; Rickli,J.; Rigaud,S.; Rijkenberg,M.J.A.; Rintoul,S.; Robinson,L.F.; Roca-Martí,M.; Rodellas,V.; Roeske,T.; Rolison,J.M.; Rosenberg,M.; Roshan,S.; Rutgers van der Loeff,M.M.; Ryabenko,E.; Saito,M.A.; Salt,L.A.; Sanial,V.; Sarthou,G.; Schallenberg,C.; Schauer,U.; Scher,H.; Schlosser,C.; Schnetger,B.; Scott,P.; Sedwick,P.N.; Semiletov,I.; Shelley,R.; Sherrell,R.M.; Shiller,A.M.; Sigman,D.M.; Singh,S.K.; Slagter,H.A.; Slater,E.; Smethie,W.M.; Snaith,H.; Sohrin,Y.; Sohst,B.; Sonke,J.E.; Speich,S.; Steinfeldt,R.; Stewart,G.; Stichel,T.; Stirling,C.H.; Stutsman,J.; Swarr,G.J.; Swift,J.H.; Thomas,A.; Thorne,K.; Till,C.P.; Till,R.; Townsend,A.T.; Townsend,E.; Tuerena,R.; Twining,B.S.; Vance,D.; Velazquez,S.; Venchiarutti,C.; Villa-Alfageme,M.; Vivancos,S.M.; Voelker,A.H.L.; Wake,B.; Warner,M.J.; Watson,R.; van Weerlee,E.; Alexandra Weigand,M.; Weinstein,Y.; Weiss,D.; Wisotzki,A.; Woodward,E.M.S.; Wu,J.; Wu,Y.; Wuttig,K.; Wyatt,N.; Xiang,Y.; Xie,R.C.; Xue,Z.; Yoshikawa,H.; Zhang,J.; Zhang,P.; Zhao,Y.; Zheng,L.; Zheng,X.-Y.; Zieringer,M.; Zimmer,L.A.; Ziveri,P.; Zunino,P.; Zurbrick,C. (2018). The GEOTRACES Intermediate Data Product 2017. Chem. Geol. 493: 210-223.
    Schreuder, L.T.; Hopmans, E.C.; Stuut, J.-B.W.; Sinninghe Damsté, J.S.; Schouten, S. (2018). Transport and deposition of the fire biomarker levoglucosan across the tropical North Atlantic Ocean. Geochim. Cosmochim. Acta 227: 171-185.
    Schreuder, L.T.; Stuut, J.-B. W.; Korte, L.F.; Sinninghe Damsté, J.S.; Schouten, S. (2018). Aeolian transport and deposition of plant wax n-alkanes across the tropical North Atlantic Ocean. Org. Geochem. 115: 113-123.
    Sinninghe Damsté, J.S.; Rijpstra, W.I.C.; Foesel, B.U.; Huber, K.J.; Overmann, J.; Nakagawa, S.; Kim, J.J.; Dunfield, P.F.; Dedysh, S.N.; Villanueva, L. (2018). An overview of the occurrence of ether- and ester- linked iso-diabolic acid membrane lipids in microbial cultures of the Acidobacteria: Implications for brGDGT paleoproxies for temperature and pH. Org. Geochem. 124: 63-76.
    Sinninghe Damsté, J.S.; Rijpstra, W.I.C.; Hopmans, E.C.; den Uijl, M.J.; Weijers, J.W.H.; Schouten, S. (2018). The enigmatic structure of the crenarchaeol isomer. Org. Geochem. 124: 22-28.
    Sollai, M. (2018). Lipids as indicators of nitrogen cycling in present and past anoxic oceans. PhD Thesis. Utrecht University: Utrecht. ISBN 9789062665051. 271 pp.
    Sorokin, D.Y.; Khijniak, T.V.; Kostrikina, N.A.; Elcheninov, A.G.; Toshchakov, S.V.; Bale, N.J.; Sinninghe Damsté, J.S; Kublanov, I.V. (2018). Natronobiforma cellulositropha gen. nov., sp. nov., a novel haloalkaliphilic member of the family Natrialbaceae (class Halobacteria) from hypersaline alkaline lakes. Syst. Appl. Microbiol. 41(4): 355-362.
    Sorokin, D.Y.; Merkel, A.Y.; Abbas, B.; Makarova, K.S.; Rijpstra, W.I.C.; Koenen, M.; Sinninghe Damsté, J.S.; Galinski, E.A.; Koonin, E.V.; van Loosdrecht, M.C.M. (2018). Methanonatronarchaeum thermophilum gen. nov., sp. nov. and 'Candidatus Methanohalarchaeum thermophilum', extremely halo(natrono)philic methyl-reducing methanogens from hypersaline lakes comprising a new euryarchaeal class Methanonatronarchaeia classis nov. Int. J. Syst. Evol. Microbiol. 68(7): 2199-2208.
    Steinle, L.; Knittel, K.; Felber, N.; Casalino, C.; de Lange, G.; Tessarolo, C.; Stadnitskaia, A.; Sinninghe Damsté, J.S.; Zopfi, J.; Lehmann, M.F.; Treude, T.; Niemann, H. (2018). Life on the edge: active microbial communities in the Kryos MgCl2-brine basin at very low water activity. ISME J. 12(6): 1414-1426.
    Taylor, B.; Weitz, J.; Brussaard, C.; Fischer, M. (2018). Quantitative infection dynamics of Cafeteria roenbergensis virus. Viruses 10(9): 468.
    Timmers, P.H.A.; Vavourakis, C.D.; Kleerebezem, R.; Sinninghe Damsté, J.S; Muyzer, G.; Stams, A.J.M.; Sorokin, D.Y.; Plugge, C.M. (2018). Metabolism and occurrence of methanogenic and sulfate-reducing syntrophic acetate oxidizing communities in haloalkaline environments. Front. Microbiol. 9(3039).
    van Bree, L.G.J.; Islam, M.M.; Rijpstra, W.I.C.; Verschuren, D.; van Duin, A.T.C.; Sinninghe Damste, J.S.; de Leeuw, J.W. (2018). Origin, formation and environmental significance of des-A-arborenes in the sediments of an East African crater lake. Org. Geochem. 125: 95-108.
    van Bree, L.G.J.; Peterse, F.; van der Meer, M.T.J.; Middelburg, J.J.; Negash, A.M.D.; De Crop, W.; Cocquyt, C.; Wieringa, J.J.; Verschuren, D.; Sinninghe Damsté, J.S. (2018). Seasonal variability in the abundance and stable carbon-isotopic composition of lipid biomarkers in suspended particulate matter from a stratified equatorial lake (Lake Chala, Kenya/Tanzania): Implications for the sedimentary record. Quat. Sci. Rev. 192: 208-224.
    van de Poll, W.H.; Kulk, G.; Rozema, P.D.; Brussaard, C.P.D.; Visser, R.J.W.; Buma, A.G.J. (2018). Contrasting glacial meltwater effects on post-bloom phytoplankton on temporal and spatial scales in Kongsfjorden, Spitsbergen. Elem. Sci. Anth. 6(1): 50.
    van der Veer, H.W.; Cardoso, J.F.M.F.; Mateo, I.; Witte, J.IJ.; van Duyl, F.C. (2018). Occurrence and life history characteristics of tropical flatfishes at the coral reefs of Curaçao, Dutch Caribbean. J. Sea Res. 142: 157-166.
    van Duyl, F.C.; Meesters, E.H. (2018). Cruise report RV Pelagia 64PE433 : Saba, St Eustatius and Saba Bank Benthic habitat mapping, and Benthic–Pelagic coupling, 26 February - 10 March 2018, St Maarten-St Maarten (NICO expedition leg 6). NIOZ: Texel. 60 pp.
    van Duyl, F.C.; Mueller, B.; Meesters, E.H. (2018). Spatio–temporal variation in stable isotope signatures (δ13C and δ15N) of sponges on the Saba Bank. PeerJ 6: e5460.
    van Heuven, S.M.A.C.; Webb, A.E.; de Bakker, D.M.; Meesters, E.; van Duyl, F.C.; Reichart, G.-J.; de Nooijer, L.J. (2018). In-situ incubation of a coral patch for community-scale assessment of metabolic and chemical processes on a reef slope. PeerJ 6: e5966.
    Van Oevelen, D.; Mueller, C.E.; Lundälv, T.; van Duyl, F.C.; de Goeij, J.M.; Middelburg, J.J. (2018). Niche overlap between a cold-water coral and an associated sponge for isotopically-enriched particulate food sources. PLoS One 13(3): e0194659.
    Vandieken, V.; Marshall, I.P.G.; Niemann, H.; Engelen, B.; Cypionka, H. (2018). Labilibaculum manganireducens gen. nov., sp. nov. and Labilibaculum filiforme sp. nov., Novel Bacteroidetes Isolated from Subsurface Sediments of the Baltic Sea. Front. Microbiol. 8: 2614.
    Villanueva, L. (2018). Engineering E. coli to have a hybrid Archaeal/Bacterial membrane. Trends microbiol. (Regul. ed.) 26(7): 559-560.
    Warden, L.; Moros, M.; Weber, Y.; Sinninghe Damsté, J.S (2018). Change in provenance of branched glycerol dialkyl glycerol tetraethers over the Holocene in the Baltic Sea and its impact on continental climate reconstruction. Org. Geochem. 121: 138-154.
    Weber, Y.; Sinninghe Damsté, J.S; Zopfi, J.; de Jonge, C.; Gilli, A.; Schubert, C.J.; Lepori, F.; Lehmann, M.F.; Niemann, H. (2018). Redox-dependent niche differentiation provides evidence for multiple bacterial sources of glycerol tetraether lipids in lakes. Proc. Natl. Acad. Sci. U.S.A. 115(43): 10926-10931.
    Wegley Kelly, L.; Haas, A.F.; Nelson, C.E. (2018). Ecosystem microbiology of coral reefs: linking genomic, metabolomic, and biogeochemical dynamics from animal symbioses to reefscape processes. mSystems 3(2): e00162-17.
    Witkowski, C.R.; Weijers, J.W.H.; Blais, B.; Schouten, S.; Sinninghe Damsté, J.S. (2018). Molecular fossils from phytoplankton reveal secular Pco2 trend over the Phanerozoic. Science Advances 4(11): eaat4556.
  • 2017
    Bale, N.; de Vries, S.; Hopmans, E.C.; Sinninghe Damsté, J.S.; Schouten, S. (2017). A method for quantifying heterocyst glycolipids in biomass and sediments. Org. Geochem. 110: 33-35.
    Balzano, S.; Villanueva, L.; de Bar, M.; Sinninghe Damsté, J.S.; Schouten, S. (2017). Impact of culturing conditions on the abundance and composition of long chain alkyl diols in species of the genus Nannochloropsis. Org. Geochem. 108: 9-17.
    Bolhuis, H.; Martín-Cuadrado, A.B.; Rosselli, R.; Pašic, L.; Rodriguez-Valera, F (2017). Transcriptome analysis of Haloquadratum walsbyi: vanity is but the surface. BMC Genom. 18(1): 14.
    Booij, K.; Maarsen, N.L.; Theeuwen, M.; van Bommel, R. (2017). A method to account for the effect of hydrodynamics on polar organic compound uptake by passive samplers. Environ. Toxicol. Chem. 36(6): 1517-1524.
    Booij, K.; Smedes, F.; Crum, S. (2017). Laboratory performance study for passive sampling of nonpolar chemicals in water. Environ. Toxicol. Chem. 36(5): 1156-1161.
    Brankovits, D.; Pohlman, J.W.; Niemann, H.; Leigh, M.B.; Leewis, M.C.; Becker, K.W.; Iliffe, T.M.; Alvarez, F.; Lehmann, M.F.; Phillips, B. (2017). Methane- and dissolved organic carbon-fueled microbial loop supports a tropical subterranean estuary ecosystem. Nature Comm. 8(1): 12 pp.
    Burdorf, L.D.W.; Tramper, A.; Seitaj, D.; Meire, L.; Hidalgo-Martinez, S.; Zetsche, E.-M.; Boschker, H.T.S.; Meysman, F.J.R. (2017). Long-distance electron transport occurs globally in marine sediments. Biogeosciences 14(3): 683-701.
    Cardoso, D.C.; Sandionigi, A.; Cretoiu, M.S; Casiraghi, M.; Stal, L.; Bolhuis, H. (2017). Comparison of the active and resident community of a coastal microbial mat. NPG Scientific Reports 7: 2969.
    Christianen, M.J.A.; Middelburg, J.J.; Holthuijsen, S.J.; Jouta, J.; Compton, T.J.; van der Heide, T.; Piersma, T.; Sinninghe Damsté, J.S.; van der Veer, H.W.; Schouten, S.; Olff, H. (2017). Benthic primary producers are key to sustain the Wadden Sea food web: stable carbon isotope analysis at landscape scale. Ecology 98(6): 1498-1512.
    Clifford, E.L.; Hansell, D.A.; Varela, M.M.; Nieto-Cid, M.; Herndl, G.J.; Sintes, E. (2017). Crustacean zooplankton release copious amounts of dissolved organic matter as taurine in the ocean. Limnol. Oceanogr. 62(6): 2745-2758.
    Coutinho, F.H.; Silveira, C.B.; Gregoracci, G.B.; Thompson, C.; Edwards, R.A.; Brussaard, C.P.D.; Dutilh, B.E.; Thompson, F.L. (2017). Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans. Nature Comm. 8: 15955.
    Crawfurd, K.J.; Alvarez-Fernandez, S.; Mojica, K.D.A.; Riebesell, U.; Brussaard, C.P.D. (2017). Alterations in microbial community composition with increasing fCO2: a mesocosm study in the eastern Baltic Sea. Biogeosciences 14(16): 3831-3849.
    de Bakker, D.M.; van Duyl, F.C.; Bak, R.P.M.; Nugues, M.M.; Nieuwland, G.; Meesters, E.H. (2017). 40 Years of benthic community change on the Caribbean reefs of Curaçao and Bonaire: the rise of slimy cyanobacterial mats. Coral Reefs 36(2): 355-367.
    de Bar, M.W.; Hopmans, E.C.; Verweij, M.; Dorhout, D.J.C.; Sinninghe Damsté, J.S.; Schouten, S. (2017). Development and comparison of chromatographic methods for the analysis of long chain diols and alkenones in biological materials and sediment. J. Chromatogr. 1521: 150-160.
    De Tender, C.; Schlundt, C.; Devriese, L.; Mincer, T.J.; Zettler, E.R.; Amaral-Zettler, L.A. (2017). A review of microscopy and comparative molecular-based methods to characterize “Plastisphere” communities. Anal. Methods 9(14): 2132-2143.
    Debeljak, P.; Proietti, M.; Reisser, J.; Ferrari, F.F.; Abbas, B.; van Loosdrecht, M.C.M.; Slat, B.; Herndl, G.J. (2017). Extracting DNA from ocean microplastics: a method comparison study. Anal. Methods 9(9): 1521-1526.
    Denis, E.H.; Pedentchouk, N.; Schouten, S.; Pagani, M.; Freeman, K.H. (2017). Fire and ecosystem change in the Arctic across the Paleocene-Eocene Thermal Maximum. Earth Planet. Sci. Lett. 467: 149-156.
    Elling, F.J.; Könneke, M.; Nicol, G.W.; Stieglmeier, M.; Bayer, B.; Spieck, E.; de la Torre, J.R.; Becker, K.W.; Thomm, M.; Prosser, J.I.; Herndl, G.J.; Schleper, C.; Hinrichs, K.-U. (2017). Chemotaxonomic characterisation of the thaumarchaeal lipidome. Environ. Microbiol. 19(7): 2681-2700.
    Erdem, Z.; Schönfeld, J. (2017). Pleistocene to Holocene benthic foraminiferal assemblages from the Peruvian continental margin. Palaeontologia Electronica 20(2): 35A.
    Evans, C.; Brandsma, J.; Pond, D.W.; Venables, H.J.; Meredith, M.P.; Witte, H.J.; Stammerjohn, S.; Wilson, W.H.; Clarke, A.; Brussaard, C.P.D. (2017). Drivers of interannual variability in virioplankton abundance at the coastal western Antarctic peninsula and the potential effects of climate change. Environ. Microbiol. 19(2): 740-755.
    Fernández-García, J.L.; de Ory, A.; Brussaard, C.P.D.; de Vega, M. (2017). Phaeocystis globosa Virus DNA Polymerase X: a “Swiss Army knife”, Multifunctional DNA polymerase-lyase-ligase for Base Excision Repair. NPG Scientific Reports 7(1): 13.
    Frieling, J.; Gebhardt, H.; Huber, M.; Adekeye, O.A.; Akande, S.O.; Reichart, G.-J.; Middelburg, J.J.; Schouten, S.; Sluijs, A. (2017). Extreme warmth and heat-stressed plankton in the tropics during the Paleocene-Eocene Thermal Maximum. Science Advances 3(3): e1600891.
    Glasl, B.; Bongaerts, P.; Elisabeth, N.H.; Hoegh-Guldberg, O.; Herndl, G.J.; Frade, P.R. (2017). Microbiome variation in corals with distinct depth distribution ranges across a shallow–mesophotic gradient (15–85 m). Coral Reefs 36(2): 447-452.
    Grosse, J.; Burson, A.; Stomp, M.; Huisman, J.; Boschker, H.T.S. (2017). From Ecological Stoichiometry to Biochemical Composition: Variation in N and P Supply Alters Key Biosynthetic Rates in Marine Phytoplankton. Front. Microbiol. 8: 1299.
    Grosse, J.; van Breugel, P.; Brussaard, C.P.D.; Boschker, H.T.S. (2017). A biosynthesis view on nutrient stress in coastal phytoplankton. Limnol. Oceanogr. 62(2): 490-506.
    Guimarães, P.; Yunes, J.S.; Cretoiu, M.S.; Stal, L.J. (2017). Growth Characteristics of an Estuarine Heterocystous Cyanobacterium. Front. Microbiol. 8: 1132.
    Highfield, A.; Joint, I.; Gilbert, J.A.; Crawfurd, K.J.; Schroeder, D.C. (2017). Change in Emiliania huxleyi Virus Assemblage Diversity but Not in Host Genetic Composition during an Ocean Acidification Mesocosm Experiment. Viruses 9(3): 41.
    Holtvoeth, J.; Vogel, H.; Valsecchi, V.; Lindhorst, K.; Schouten, S.; Wagner, B.; Wolff, G.A. (2017). Linear and non-linear responses of vegetation and soils to glacial-interglacial climate change in a Mediterranean refuge. NPG Scientific Reports 7(1): 7.
    Hornick, T.; Bach, L.T.; Crawfurd, K.J.; Spilling, K.; Achterberg, E.P.; Woodhouse, J.N.; Schulz, K.G.; Brussaard, C.P.D.; Riebesell, U.; Grossart, H.-P. (2017). Ocean acidification impacts bacteria – phytoplankton coupling at low-nutrient conditions. Biogeosciences 14(1): 1-15.
    Jaramillo, C.; Romero, I.; D’Apolito, C.; Bayona, G.; Duarte, E.; Louwye, S.; Escobar, J.; Luque, J.; Carrillo-Briceño, J.D.; Zapata, V.; Mora, A.; Schouten, S.; Zavada, M.; Harrington, G.; Ortiz, J.; Wesselingh, F.P. (2017). Miocene flooding events of western Amazonia. Science Advances 3(5): e1601693.
    Kaiser, J.; van der Meer, M.T.J.; Arz, H.W. (2017). Long-chain alkenones in Baltic Sea surface sediments: New insights. Org. Geochem. 112: 93-104.
    Kandiano, E.S.; van der Meer, M.T.J.; Schouten, S.; Fahl, K.; Sinninghe Damsté, J.S.; Bauch, H.A. (2017). Response of the North Atlantic surface and intermediate ocean structure to climate warming of MIS 11. NPG Scientific Reports 7: 46192.
    Kasson, P.; DiMaio, F.; Yu, X.; Lucas-Staat, S.; Krupovic, M.; Schouten, S.; Prangishvili, D.; Egelman, E.H. (2017). Model for a novel membrane envelope in a filamentous hyperthermophilic virus. eLIFE 6: e26268.
    Kim, J.J.; Marjerrison, C.E.; Cornish Shartau, S.L.; Brady, A.L.; Sharp, C.E.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Schumann, P.; Grasby, S.E.; Dunfield, P.F. (2017). Actinocrinis puniceicyclus gen. nov., sp nov., an actinobacterium isolated from an acidic spring. Int. J. Syst. Evol. Microbiol. 67(3): 602-609.
    Korte, L.F.; Brummer, G.-J. A.; van der Does, M.; Guerreiro, C.V.; Hennekam, R.; van Hateren, J.A.; Jong, D.; Munday, C.I.; Schouten, S.; Stuut, J-B W. (2017). Downward particle fluxes of biogenic matter and Saharan dust across the equatorial North Atlantic. Atmos. Chem. Phys. 17(9): 6023-6040.
    Köstner, N.; Scharnreitner, L.; Jürgens, K.; Labrenz, M.; Herndl, G.J.; Winter, C. (2017). High viral abundance as a consequence of low viral decay in the Baltic Sea redoxcline. PLoS One 12(6): e0178467.
    Kulichevskaya, I.S.; Ivanova, A.; Baulina, O.I.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Dedysh, S.N. (2017). Fimbriiglobus ruber gen. nov., sp. nov., a Gemmata-like planctomycete from Sphagnum peat bog and the proposal of Gemmataceae fam. nov. Int. J. Syst. Evol. Microbiol. 67: 218–224.
    Kulichevskaya, I.S.; Ivanova, A.A.; Detkova, E.N.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Dedysh, S.N. (2017). Tundrisphaera lichenicola gen. nov., sp. nov., a psychrotolerant representative of the family Isosphaeraceae from lichen-dominated tundra soils. Int. J. Syst. Evol. Microbiol. 67(9): 3583-3589.
    Landry, Z.; Swan, B.K.; Herndl, G.J.; Stepanauskas, R.; Giovannonia, S.J. (2017). SAR202 Genomes from the Dark Ocean Predict Pathways for the Oxidation ofRecalcitrant Dissolved Organic Matter. Mbio 8(2): e00413-17.
    Lattaud, J.; Dorhout, D.; Schulz, H.; Castañeda, I.S.; Schefuß, E.; Sinninghe Damsté, J.S.; Schouten, S. (2017). The C32 alkane-1,15-diol as a proxy of late Quaternary riverine input in coastal margins. Clim. Past 13(8): 1049-1061.
    Lattaud, J.; Kim, J.-H; de Jonge, C.; Zell, C.; Sinninghe Damsté, J.S.; Schouten, S. (2017). The C32 alkane-1,15-diol as a tracer for riverine input in coastal seas. Geochim. Cosmochim. Acta 202: 146-158.
    Le Guitton, M.; Soetaert, K.; Sinninghe Damsté, J.S.; Middelburg, J.J. (2017). A seasonal study of particulate organic matter composition and quality along an offshore transect in the southern North Sea. Est., Coast. and Shelf Sci. 188: 1-11.
    Lipsewers, Y.A. (2017). Role of chemolithoautotrophic microorganisms involved in nitrogen and sulfur cycling in coastal marine sediments. PhD Thesis. [S.n.]: [s.l.]. ISBN 978-90-6266-4924. 225 pp.
    Lipsewers, Y.A.; Vasquez Cardenas, D.; Seitaj, D.; Schauer, R.; Hidalgo-Martinez, S.; Sinninghe Damsté, J.S.; Meysman, F.J.R.; Villanueva, L.; Boschker, H.T.S. (2017). Impact of seasonal hypoxia on activity and community structure of chemolithoautotrophic bacteria in a coastal sediment. Appl. Environ. Microbiol. 83(10): e03517-16.
    Loomis, S.E.; Russell, J.M.; Verschuren, D.; Morrill, C.; De Cort, G.; Sinninghe Damsté, J.S.; Olago, D.; Eggermont, H.; Street-Perrott, F.A.; Kelly, M.A. (2017). The tropical lapse rate steepened during the Last Glacial Maximum. Science Advances 3(1): e1600815.
    Luria, C.M.; Amaral-Zettler, L.A.; Ducklow, H.W.; Repeta, D.J.; Rhyne, A.L.; Rich, J.J. (2017). Seasonal Shifts in Bacterial Community Responses to Phytoplankton-Derived Dissolved Organic Matter in the Western Antarctic Peninsula. Front. Microbiol. 8: 2117.
    Maat, D.S.; Biggs, T.; Evans, C.; van Bleijswijk, J.D.L.; van der Wel, N.; Dutilh, B.E.; Brussaard, C.P.D. (2017). Characterization and Temperature Dependence of Arctic Micromonas polaris Viruses. Viruses 9(6): 134.
    Middelboe, M.; Brussaard, C.P.D. (2017). Marine Viruses: Key Players in Marine Ecosystems. Viruses 9(12): 302.
    Mueller, B.; Meesters, E.H.; van Duyl, F.C. (2017). DOC concentrations across a depth-dependent light gradient on a Caribbean coral reef. PeerJ 5: e3456.
    Naghoni, A.; Emtiazi, G.; Amoozegar, M.A.; Cretoiu, M.S.; Stal, L.J.; Etemadifar, Z.; Shahzadeh Fazeli, S.A.; Bolhuis, H. (2017). Microbial diversity in the hypersaline Lake Meyghan, Iran. NPG Scientific Reports 7(1): 11522.
    Nierop, K.G.J.; Reichart, G.-J.; Veld, H.; Sinninghe Damsté, J.S. (2017). The influence of oxygen exposure time on the composition of macromolecular organic matter as revealed by surface sediments on the Murray Ridge (Arabian Sea). Geochim. Cosmochim. Acta 206: 40-56.
    O'Brien, C.L.; Robinson, S.A.; Pancost, R.D.; Sinninghe Damsté, J.S.; Schouten, S.; Lunt, D.J.; Alsenz, H.; Bornemann, A.; Bottini, C.; Brassell, S.C.; Farnsworth, A.; Forster, A.; Huber, B.T.; Inglis, G.N.; Jenkyns, H.C.; Linnert, C.; Littler, K.; Markwick, P.; McAnena, A.; Mutterlose, J.; Naafs, B.D.A.; Püttmann, W.; Sluijs, A.; van Helmond, N.A.G.M.; Vellekoop, J.; Wagner, T.; Wrobel, N.E. (2017). Cretaceous sea-surface temperature evolution: Constraints from TEX86 and planktonic foraminiferal oxygen isotopes. Earth-Sci. Rev. 172: 224-247.
    Osborne, K.A.; Gray, N.D.; Sherry, A.; Leary, P.; Mejeha, O.; Bischoff, J.; Rush, D.; Sidgwick, F.R.; Birgel, D.; Kalyuzhnaya, M.; Talbot, H.M. (2017). Methanotroph-derived bacteriohopanepolyol signatures as a function of temperature related growth, survival, cell death and preservation in the geological record. Environmental Microbiology Reports 9(5): 492-500.
    Pachiadaki, M.G.; Sintes, E.; Bergauer, K.; Brown, J.M.; Record, N.R.; Swan, B.K.; Mathyer, M.E.; Hallam, S.J.; López-Garcìa, P.; Takaki, Y.; Nunoura, T.; Woyke, T.; Herndl, G.J.; Stepanauskas, R. (2017). Major role of nitrite-oxidizing bacteria in dark ocean carbon fixation. Science (Wash.) 358(6366): 1046-1051.
    Petras, D.; Koester, I.; Da Silva, R.; Stephens, B.M.; Haas, A.F.; Nelson, C.E.; Kelly, L.W.; Aluwihare, L.I.; Dorrestein, P.C. (2017). High-Resolution Liquid Chromatography Tandem Mass Spectrometry Enables Large Scale Molecular Characterization of Dissolved Organic Matter. Front. Mar. Sci. 4: 405.
    Randlett, M.-E.; Bechtel, A.; van der Meer, M.T.J.; Peterse, F; Litt, T.; Pickarski, N.; Kwiecien, O.; Stockhecke, M.; Wehrli, B.; Schubert, C.J. (2017). Biomarkers in Lake Van sediments reveal dry conditions in eastern Anatolia during 110.000-10.000 years B.P. Geochem. Geophys. Geosyst. 18(2): 571-583.
    Reed, D.C.; Deemer, B.R.; van Grinsven, S.; Harrison, J.A. (2017). Are elusive anaerobic pathways key methane sinks in eutrophic lakes and reservoirs? Biogeochemistry 134(1-2): 29-39.
    Rozema, P.D.; Biggs, T.; Sprong, P.A.A.; Buma, A.G.J.; Venables, H.J.; Evans, C.; Meredith, M.P.; Bolhuis, H. (2017). Summer microbial community composition governed by upper-ocean stratification and nutrient availability in northern Marguerite Bay, Antarctica. Deep-Sea Res., Part II, Top. Stud. Oceanogr. 139: 151-166.
    Rush, D.; Sinninghe Damsté, J.S. (2017). Lipids as paleomarkers to constrain the marine nitrogen cycle. Environ. Microbiol. 19(6): 2119–2132,.
    Schmidt, V.; Gomez-Chiarri, M.; Roy, C.; Smith, K.; Amaral-Zettler, L. (2017). Subtle Microbiome Manipulation Using Probiotics Reduces Antibiotic-Associated Mortality in Fish. mSystems 2(6): e00133-17.
    Sinninghe Damsté, J.S.; Rijpstra, W.I.C.; Dedysh, S.N.; Foesel, B.U.; Villanueva, L. (2017). Pheno- and Genotyping of Hopanoid Production in Acidobacteria. Front. Microbiol. 8: 968.
    Sollai, M.; Hopmans, E.C.; Bale, N.J.; Mets, A.; Warden, L.; Moros, M.; Sinninghe Damsté, J.S. (2017). The Holocene sedimentary record of cyanobacterial glycolipids in the Baltic Sea: an evaluation of their application as tracers of past nitrogen fixation. Biogeosciences 14(24): 5789-5804.
    Sorokin, D.Y.; Messina, E.; Smedile, F; Roman, P.; Sinninghe Damsté, J.S.; Ciordia, S.; Mena, M.C.; Ferrer, M.; Golyshin, P.N.; Kublanov, I.V.; Samarov, N.I.; Toshchakov, S.V.; La Cono, V.; Yakimov, M.M. (2017). Discovery of anaerobic lithoheterotrophic haloarchaea, ubiquitous in hypersaline habitats. ISME J. 11: 1245-1260.
    Stal, L. (2017). The effect of oxygen concentration and temperature on nitrogenase activity in the heterocystous cyanobacterium Fischerella sp. NPG Scientific Reports 7(1): 10.
    Stal, L.J. (2017). Gregarious cyanobacteria. Environ. Microbiol. 19(6): 2105-2109.
    Stal, L.J.; Bolhuis, H.; Cretoiu, M.S. (2017). Phototrophic Microbial Mats, in: Hallenbeck, P.C. Modern Topics in the Phototrophic Prokaryotes : environmental and applied aspects . pp. 295-321.
    Tierney, J.E.; Sinninghe Damsté, J.S.; Pancost, R.D.; Sluijs, A.; Zachos, J.C. (2017). Eocene temperature gradients. Nature Geoscience 10(8): 538-539.
    van Soelen, E.E.; Kim, J.-H.; Ventura Santos, R.; Dantas, E.L.; Vasconcelos de Almeida, F.; Pinheiro Pires, J.; Roddaz, M.; Sinninghe Damsté, J.S. (2017). A 30 Ma history of the Amazon River inferred from terrigenous sediments and organic matter on the Ceará Rise. Earth Planet. Sci. Lett. 474: 40-48.
    Vellekoop, J.; Holwerda, F.; Prámparo, M.B.; Willmott, V.; Schouten, S.; Cúneo, N.R.; Scasso, R.A.; Brinkhuis, H. (2017). Climate and sea-level changes across a shallow marine Cretaceous-Palaeogene boundary succession in Patagonia, Argentina. Palaeontology 60(4): 519-534.
    Villanueva, L.; Schouten, S.; Sinninghe Damsté, J.S. (2017). Phylogenomic analysis of lipid biosynthetic genes of Archaea shed light on the ‘lipid divide’. Environ. Microbiol. 19(1): 54-69.
    Warden, L.; Moros, M.; Neumann, T.; Shennan, S.; Timpson, A.; Manning, K.; Sollai, M.; Wacker, L.; Perner, K.; Häusler, K.; Leipe, T.; Zillén, L.; Kotilainen, A.; Jansen, E.; Schneider, R.R.; Oeberst, R.; Arz, H.; Sinninghe Damste, J.S. (2017). Climate induced human demographic and cultural change in northern Europe during the mid-Holocene. NPG Scientific Reports 7(1): 15251.
    Warden, L.A. (2017). Paleoenvironmental reconstructions in the Baltic Sea and Iberian margin : Assessment of GDGTs and long-chain alkenones in Holocene sedimentary records. PhD Thesis. NIOZ: Texel. 249 pp.
    Webb, A.E.; van Heuven, S.M.A.C.; de Bakker, D.M.; van Duyl, F.C.; Reichart, G.-J.; de Nooijer, L.J. (2017). Combined Effects of Experimental Acidification and Eutrophication on Reef Sponge Bioerosion Rates. Front. Mar. Sci. 4: 311.
    Weber, Y.; Sinninghe Damsté, J.S.; Hopmans, E.C.; Lehmann, M.F.; Niemann, H. (2017). Incomplete recovery of intact polar glycerol dialkyl glycerol tetraethers from lacustrine suspended biomass. Limnol. Oceanogr., Methods 15(9): 782–793.
    Weiss, G.M.; Pfannerstill, E.Y.; Schouten, S.; Sinninghe Damsté, J.S.; van der Meer, M.T.J. (2017). Effects of alkalinity and salinity at low and high light intensity on hydrogen isotope fractionation of long-chain alkenones produced by Emiliania huxleyi. Biogeosciences 14(24): 5693-5704.
  • 2016
    Bale, N.J.; Hopmans, E.C.; Schoon, P.; de Kluijver, A.; Downing, J.A.; Middelburg, J.J.; Sinninghe Damsté, J.S.; Schouten, S. (2016). Impact of trophic state on the distribution of intact polar lipids in surface waters of lakes. Limnol. Oceanogr. 61(3): 1065–1077.
    Baltar, F.; Lundin, D.; Palovaara, J.; Lekunberri, I.; Reinthaler, T.; Herndl, G.; Pinhassi, J. (2016). Prokaryotic Responses to Ammonium and Organic Carbon Reveal Alternative CO2 Fixation Pathways and Importance of Alkaline Phosphatase in the Mesopelagic North Atlantic. Front. Microbiol. 7: 1670.
    Bayer, B.; Vojvoda, J.; Offre, P.; Alves, R.J.E.; Elisabeth, N.H.; Garcia, J.A.L.; Volland, J.-M.; Srivastava, A.; Schleper, C.; Herndl, G. (2016). Physiological and genomic characterization of two novel marine thaumarchaeal strains indicates niche differentiation. ISME J. 10: 1051-1063.
    Bochdansky, A.B.; Clouse, M.A.; Herndl, G. (2016). Dragon kings of the deep sea: marine particles deviate markedly from the common number-size spectrum. NPG Scientific Reports 6(22633): 7 pp.
    Bolhuis, H.; Cretoiu, M.S. (2016). What is so special about marine microorganisms? Introduction to the marine microbiome - from diversity to biotechnological potential, in: Stal, L.J. et al. (Ed.) The marine microbiome. An untapped source of biodiversity and biotechnological potential. pp. 3-20.
    Booij, K.; Robinson, C.D.; Burgess, R.M.; Mayer, P.; Roberts, C.A.; Ahrens, L.; Allan, I.J.; Brant, J.; Jones, L.; Kraus, U.R.; Larsen, M.M.; Lepom, P.; Petersen, J.; Pröfrock, D.; Roose, P.; Schäfer, S.; Smedes, F.; Tixier, C.; Vorkamp, K.; Whitehouse, P. (2016). Passive sampling in regulatory chemical monitoring of nonpolar organic compounds in the aquatic environment. Environ. Sci. Technol. 50(1): 3-17.
    Brussaard, C.P.D.; Baudoux, A.-C.; Rodríguez-Valera, F. (2016). Marine viruses, in: Stal, L.J. et al. (Ed.) The marine microbiome. An untapped source of biodiversity and biotechnological potential. pp. 155-183.
    Brussaard, C.P.D.; Bidle, K.D.; Pedrós-Alió, C.; Legrand, C. (2016). The interactive microbial ocean. Nature Microbiology 2: 16255.
    Brussaard, C.P.D.; Peperzak, L.; Beggah, S.; Wick, L.Y.; Wuerz, B.; Weber, J.; Arey, J.S.; Van der Burg, B.; Jonas, A.; Huisman, J.; van der Meer, J.R. (2016). Immediate ecotoxicological effects of short-lived oil spills on marine biota. Nature Comm. 7(11206): 11 pp.
    Buckles, L.K.; Verschuren, D.; Weijers, J.W.H.; Cocquyt, C.; Blaauw, M.; Sinninghe Damsté, J.S. (2016). Interannual and (multi-)decadal variability in the sedimentary BIT index of Lake Challa, East Africa, over the past 2200 years: assessment of the precipitation proxy. Clim. Past 12: 1243-1262.
    Burson, A.; Stomp, M.; Akil, L.; Brussaard, C.P.D.; Huisman, J. (2016). Unbalanced reduction of nutrient loads has created an offshore gradient from phosphorus to nitrogen limitation in the North Sea. Limnol. Oceanogr. 61(3): 869–888.
    Castañeda, I.S; Caley, T.; Dupont, L.; Kim, J.-H.; Malaizé, B.; Schouten, S. (2016). Middle to Late Pleistocene vegetation and climate change insubtropical southern East Africa. Earth Planet. Sci. Lett. 450: 306–316.
    Castañeda, I.S; Schouten, S.; Paetzold, J.; Lucassen, F; Kasemann, S.; Kuhlmann, H.; Schefuß, E. (2016). Hydroclimate variability in the Nile River Basin during the past 28,000 years. Earth Planet. Sci. Lett. 438: 47-56.
    Courtens, E.N.P.; Spieck, E.; Vilchez-Vargas, R.; Bodé, S.; Boeckx, P.; Schouten, S.; Jáuregui, R.; Pieper, D.H.; Vlaeminck, S.E.; Boon, N. (2016). A robust nitrifying community in a bioreactor at 50°C opens up the path for thermophilic nitrogen removal. ISME J. 10: 2293–2303.
    Darling, K.F.; Schweizer, M.; Knudsen, K.L.; Evans, K.M.; Bird, C.; Roberts, A.; Filipsson, H.L.; Kim, J.-H; Gudmundsson, G.; Wade, C.M.; Sayer, M.D.J.; Austin, W.E.N. (2016). The genetic diversity, phylogeography and morphology of Elphidiidae (Foraminifera) in the Northeast Atlantic. Mar. Micropaleontol. 129: 1-23.
    de Bakker, D.M.; Meesters, E.H.; Bak, R.P.M.; Nieuwland, G.; van Duyl, F.C. (2016). Long-term Shifts in Coral Communities On Shallow to Deep Reef Slopes of Curaçao and Bonaire: Are There Any Winners? Front. Mar. Sci. 3: 247.
    de Bakker, D.M.; Meesters, E.H.W.G.; van Bleijswijk, J.D.L.; Luttikhuizen, P.C.; Breeuwer, H.J.A.J.; Becking, L.E. (2016). Population Genetic Structure, Abundance, and Health Status of Two Dominant BenthicSpecies in the Saba Bank National Park, Caribbean Netherlands: Montastraea cavernosa and Xestospongia muta. PLoS One 11: e0155969.
    de Bar, M.W.; Dorhout, D.J.C.; Hopmans, E.C.; Rampen, S.W.; Sinninghe Damste, J.S.; Schouten, S. (2016). Constraints on the application of long chain diol proxies in the Iberian Atlantic margin. Org. Geochem. 10: 184–195.
    De Corte, D.; Sintes, E.; Yokokawa, T.; Lekunberri, I.; Herndl, G. (2016). Large-scale distribution of microbial and viral populations in the South Atlantic Ocean. Environmental Microbiology Reports 8(2): 305-315.
    de Jonge, C.; Stadnitskaia, Alina; Cherkashov, G.; Sinninghe Damsté, J.S. (2016). Branched glycerol dialkyl glycerol tetraethers and crenarchaeol record post-glacial sea level rise and shift in source of terrigenous brGDGTs in the Kara Sea (Arctic Ocean). Org. Geochem. 92: 42-54.
    de Jonge, C.; Talbot, H.M.; Bischoff, J.; Cherkashov, G.; Sinninghe Damsté, J.S. (2016). Bacteriohopanepolyol distribution in Yenisei River and Kara Sea suspended particulate matter and sediments traces terrigenous organic matter input. Geochim. Cosmochim. Acta 174: 85–101.
    den Haan, J.; Huisman, J.; Brocke, H.J.; Goehlich, H.; Latijnhouwers, K.R.W.; van Heeringen, S.; Honcoop, S.A.S.; Bleyenberg, T.E.; Schouten, S.; Cerli, C.; Hoitinga, L.; Vermeij, M.J.A.; Visser, P.M. (2016). Nitrogen and phosphorus uptake rates of different species from a coral reef community after a nutrient pulse. NPG Scientific Reports 6: 28821.
    Dessandier, P.-A.; Bonnin, J.; Kim, J.-H.; Bichona, S.; Deflandre, B.; Grémare, A.; Sinninghe Damsté, J.S. (2016). Impact of organic matter source and quality on living benthic foraminiferal distribution on a river-dominated continental margin: A study of the Portuguese Margin. J. Geophys. Res. 121(6): 1689–1714.
    Doering, K.; Erdem, Z.; Ehlert, C.; Fleury, S.; Frank, M.; Schneider, R. (2016). Changes in diatom productivity and upwelling intensity off Peru since the Last Glacial Maximum: Response to basin-scale atmospheric and oceanic forcing. Paleoceanography 31: 1453–1473.
    Egger, M.; Lenstra, W.; Jong, D.; Meysman, F.J.R.; Sapart, C.J.; van der Veen, C.; Röckmann, T.; Gonzalez, S; Slomp, C.P. (2016). Rapid sediment accumulation results in high methane effluxes from coastal sediments. PLoS One 11(8): e0161609.
    Fan, H. (2016). Investigations on the nitrogen cycle in the coastal North Sea. PhD Thesis. UvA: Amsterdam. ISBN 978-94-91407-32-1. 156 pp.
    Frade, P.R.; Roll, K.; Bergauer, K.; Herndl, G. (2016). Archaeal and Bacterial Communities Associated with the Surface Mucus of Caribbean Corals Differ in Their Degree of Host Specificity and Community Turnover Over Reefs. PLoS One 11(1): e0144702.
    Frade, P.R.; Schwaninger, V.; Glasl, B.; Sintes, E.; Hill, R.W.; Simó, R.; Herndl, G. (2016). Dimethylsulfoniopropionate in corals and its interrelations with bacterial assemblages in coral surface mucus. Environ. Chem. 13: 252–265.
    Frank, A.H.; Garcia, J.A.L.; Herndl, G.; Reinthaler, T. (2016). Connectivity between surface and deep waters determines prokaryotic diversity in the North Atlantic Deep Water. Environ. Microbiol. 18(6): 2052–2063.
    Frank, A.H.; Pontiller, B.; Herndl, G.; Reinthaler, T. (2016). Erythromycin and GC7 fail as domain-specific inhibitors for bacterial and archaeal activity in the open ocean . Aquat. Microb. Ecol. 77: 99-110.
    Glasl, B.; Herndl, G.; Frade, P.R. (2016). The microbiome of coral surface mucus has a key role in mediating holobiont health and survival upon disturbance. ISME J. 10: 2280–2292.
    Grosse, J. (2016). Resource limitation and the biochemical composition of marine phytoplankton. PhD Thesis. UvA: Amsterdam. ISBN 978-94-91407-37-6.
    Gumanao, G.S.; Saceda-Cardoz, M.M.; Mueller, B.; Bos, A.R. (2016). Length–weight and length–length relationships of 139 Indo-Pacific fish species (Teleostei) from the Davao Gulf, Philippines. J. Appl. Ichthyol. 377: 377–385.
    Heinzelmann, S.M.; Bale, N.J.; Villanueva, L.; Sinke-Schoen, D.; Philippart, C.J.M.; Sinninghe Damsté, J.S.; Schouten, S.; Van der Meer, M.T.J. (2016). Seasonal changes in the D  /  H ratio of fatty acids of pelagic microorganisms in the coastal North Sea. Biogeosciences 13: 5527-5539.
    Hopmans, E.C.; Schouten, S.; Sinninghe Damsté, J.S. (2016). The effect of improved chromatography on GDGT-based palaeoproxies. Org. Geochem. 93: 1-6.
    Ismail, A.; Ktari, L.; Bolhuis, H.; Ahmed, M.; Boudabbous, A.; Stal, L.J.; Cretoiu, M.S.; El Bour, M. (2016). Antimicrobial Activities of Bacteria Associated with the Brown Alga Padina pavonica. Front. Microbiol. 7: 1072.
    Johnson, T.C.; Werne, J.P.; Brown, E.T.; Abbott, A.; Berke, M.; Steinman, B.E.; Halbur, J.; Contreras, S.; Grosshuesch, S.; Deino, A.; Lyons, R.P.; Scholz, C.A.; Schouten, S.; Sinninghe Damsté, J.S. (2016). A progressively wetter climate in southern East Africa over the past 1.3 million years. Nature (Lond.) 537(7619): 220-224.
    Jung, M.Y.; Kim, J.G.; Sinninghe Damsté, J.S.; Rijpstra, W.I.C.; Madsen, E.L.; Kim, S.J.; Hong, H.; Si, O.-J.; Kerou, M.; Schleper, C.; Rhee, S.K. (2016). A hydrophobic ammonia-oxidizing archaeon of the Nitrosocosmicus clade isolated from coal tar-contaminated sediment. Environmental Microbiology Reports 8(6): 983–992.
    Kandiano, E.S.; Van der Meer, M.T.J.; Bauch, H.A.; Helmke, J.; Sinninghe Damsté, J.S.; Schouten, S. (2016). A cold and fresh ocean surface in the Nordic Seas during MIS 11: Significance for the future ocean. Geophys. Res. Lett. 43(20): 10,929–10,937.
    Kim, J.-H.; Villanueva, L.; Zell, C.; Sinninghe Damsté, J.S. (2016). Biological source and provenance of deep-water derived isoprenoid tetraether lipids along the Portuguese continental margin. Geochim. Cosmochim. Acta 172: 177–204.
    Kim, J.G.; Park, S.J.; Sinninghe Damsté, J.S.; Schouten, S.; Rijpstra, W.I.C.; Jung, M.Y.; Kim, S.J.; Gwak, J.-H.; Hong, H.; Si, O.-J.; Lee, S.H.; Madsen, E.L.; Rhee, S.K. (2016). Hydrogen peroxide detoxification is a key mechanism for growth of ammonia-oxidizing archaea. Proc. Natl. Acad. Sci. U.S.A. 113(28): 7888–7893.
    Kulichevskaya, I.S.; Ivanova, A.; Suzina, N.E.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Dedysh, S.N. (2016). Paludisphaera borealis gen. nov., sp. nov., a hydrolytic planctomycete from northern wetlands, and proposal of Isosphaeraceae fam. nov. Int. J. Syst. Evol. Microbiol. 66: 837-844. 10.1099/ijsem.0.000799
    Kusch, S.; Rethemeyer, J.; Hopmans, E.C.; Wacker, L.; Mollenhauer, G. (2016). Factors influencing 14C concentrations of algal and archaeal lipids and their associated sea surface temperature proxies in the Black Sea. Geochim. Cosmochim. Acta 188: 35–57.
    Lehtovirta-Morley, L.E.; Sayavedra-Soto, L.A.; Gallois, N.; Schouten, S.; Stein, L.Y.; Prosser, J.I.; Nicol, G.W. (2016). Identifying Potential Mechanisms Enabling Acidophily in the Ammonia-Oxidizing Archaeon “Candidatus Nitrosotalea devanaterra”. Appl. Environ. Microbiol. 82: 2608-2619.
    Levy, R.; Schouten, S.; SMS Sci Team (2016). Antarctic ice sheet sensitivity to atmospheric CO2 variations in the early to mid-Miocene. Proc. Natl. Acad. Sci. U.S.A. 113(13): 3453–3458.
    Lipsewers, Y.A.; Hopmans, E.C.; Meysman, F.J.R.; Sinninghe Damsté, J.S.; Villanueva, L. (2016). Abundance and diversity of denitrifying and anammox bacteria in seasonally hypoxic and sulfidic sediments of the saline Lake Grevelingen. Front. Microbiol. 7: 1661.
    Lüke, C.; Speth, D.R.; Kox, M.A.R.; Villanueva, L.; Jetten, M.S.M. (2016). Metagenomic analysis of nitrogen and methane cycling in the Arabian Sea oxygen minimum zone. PeerJ 4: e1924.
    Maat, D.; Bale, N.J.; Hopmans, E.C.; Sinninghe Damsté, J.S.; Schouten, S.; Brussaard, C.P.D. (2016). Increasing P limitation and viral infection impact lipid remodeling of the picophytoplankter Micromonas pusilla. Biogeosciences 13(5): 1667-1676.
    Maat, D.S. (2016). Ecophysiological aspects of algal host: virus interactions in a changing ocean. PhD Thesis. University of Amsterdam: Amsterdam. ISBN 9789491407383. 232 pp.
    Maat, D.S.; Brussaard, C.P.D. (2016). Both phosphorus- and nitrogen limitation constrain viral proliferation in marine phytoplankton. Aquat. Microb. Ecol. 77(2): 87-97.
    Maat, D.S.; de Blok, R.; Brussaard, C.P.D. (2016). Combined Phosphorus Limitation and Light Stress Prevent Viral Proliferation in the Phytoplankton Species Phaeocystis globosa, but Not in Micromonas pusilla. Front. Mar. Sci. 3: 160.
    Maat, D.S.; van Bleijswijk, J.D.L.; Witte, H.J.; Brussaard, C.P.D. (2016). Virus production in phosphorus-limited Micromonas pusilla stimulated by a supply of naturally low concentrations of different phosphorus sources, far into the lytic cycle. FEMS Microbiol. Ecol. 92: fiw136.
    Mao, J.; Nierop, K.G.J.; Rietkerk, M.; Sinninghe Damsté, J.S.; Dekker, S.C. (2016). The influence of vegetation on soil water repellency-markers and soil hydrophobicity. Sci. Total Environ. 566-567: 608-620.
    Moerdijk-Poortvliet, T.C.W. (2016). Carbon cycling in benthic diatom mats: Novel applications of LC/IRMS. PhD Thesis. Universiteit van Amsterdam: Amsterdam. ISBN 978-94-91407-44-4. 270 pp.
    Mojica, K.D.A.; Huisman, J.; Wilhelm, S.W.; Brussaard, C.P.D. (2016). Latitudinal variation in virus-induced mortality of phytoplankton across the North Atlantic Ocean. ISME J. 10(2): 500-513.
    Moore, E.K.; Hopmans, E.C.; Rijpstra, W.I.C.; Villanueva, L.; Sinninghe Damsté, J.S. (2016). Elucidation and identification of amino acid containing membrane lipids using liquid chromatography/high-resolution mass spectrometry. Rapid Comm. Mass Spectrom. 30(6): 739–750.
    Mueller, B.; den Haan, J.; Visser, P.M.; Vermeij, M.J.A.; van Duyl, F.C. (2016). Effect of light and nutrient availability on the release of dissolved organic carbon (DOC) by Caribbean turf algae. NPG Scientific Reports 6: 23248.
    Nieto-Moreno, V.; Rohrmann, A.; van der Meer, M.T.J.; Sinninghe Damsté, J.S.; Sachse, D.; Tofelde, S.; Niedermeyer, E.M.; Strecker, M.R.; Mulch, A. (2016). Elevation-dependent changes in n-alkane δD and soil GDGTs across the South Central Andes. Earth Planet. Sci. Lett. 453: 234–242.
    Oshkin, I.Y.; Belova, S.E.; Danilova, O.V.; Miroshnikov, K.K.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Liesack, W.; Dedysh, S.N. (2016). Methylovulum psychrotolerans sp. nov., a cold-adapted methanotroph from low-temperature terrestrial environments and emended description of the genus Methylovulum. Int. J. Syst. Evol. Microbiol. 66: 2417-2423. 10.1099/ijsem.0.001046
    Pascal, P.-Y.; Gros, O.; Boschker, H.T.S. (2016). Temporal fluctuations in the trophic role of large benthic sulfur bacteria in mangrove sediment. Food Webs 7: 20-28.
    Piquet, A.M.-T.; Maat, D.S.; Confurius-Guns, V.; Sintes, E.; Herndl, G.; van de Poll, W.H.; Wiencke, C.; Buma, A.G.J.; Bolhuis, H. (2016). Springtime dynamics, productivity and activity of prokaryotes in two Arctic fjords. Polar Biol. 39: 1749–1763.
    Rensen, E.I.; Mochizuki, T,; Quemin, E.R. J.; Schouten, S.; Krupovica, M.; Prangishvili, D. (2016). A virus of hyperthermophilic archaea with a unique architecture among DNA viruses. Proc. Natl. Acad. Sci. U.S.A. 113(9): 2478–2483.
    Rix, L.; de Goeij, J.M.; Mueller, C.E.; Struck, U.; Middelburg, J.J.; van Duyl, F.C.; Al-Horani, F.A.; Wild, C.; Naumann, M.S.; Van Oevelen, D. (2016). Coral mucus fuels the sponge loop in warm- and cold-water coral reef ecosystems. NPG Scientific Reports 6(18715): 11 pp.
    Rodrigo-Gámiz, M.; Rampen, S.W.; Schouten, S.; Sinninghe Damsté, J.S. (2016). The impact of oxic degradation on long chain alkyl diol distributions in Arabian Sea surface sediments. Org. Geochem. 100: 1-9.
    Rodríguez-Valera, F.; Martin-Cuadrado, A.-B.; Bolhuis, H. (2016). Haloquadratum, in: Whitman, W.B. (Ed.) Bergey's Manual of Systematics of Archaea and Bacteria. pp. 1-11.
    Salamanca Villegas, S.; van Soelen, E.; Teunissen van Manen, M.L.; Flantua, S.G.A.; Santos, R.V.; Roddaz, M.; Dantas, E.L.; van Loon, E.; Sinninghe Damsté, J.S.; Kim, J.-H.; Hoorn, C. (2016). Amazon forest dynamics under changing abiotic conditions in the early Miocene (Colombian Amazonia). J. Biogeogr. 43(12): 2424–2437.
    Sciscio, L.; Tsikos, H.; Roberts, D.L.; Scott, L.; van Breugel, Y.; Sinninghe Damsté, J.S.; Schouten, S.; Grocke, D.R. (2016). Miocene climate and vegetation changes in the Cape Peninsula, South Africa: Evidence from biogeochemistry and palynology. Palaeogeogr. Palaeoclimatol. Palaeoecol. 445: 124-137.
    Sinninghe Damsté, J.S. (2016). Spatial heterogeneity of sources of branched tetraethers in shelf systems: The geochemistry of tetraethers in the Berau River delta (Kalimantan, Indonesia). Geochim. Cosmochim. Acta 186: 13-31.
    Sintes, E.; De Corte, D.; Haberleitner, E.; Herndl, G. (2016). Geographic Distribution of Archaeal Ammonia Oxidizing Ecotypes in the Atlantic Ocean. Front. Microbiol. 7: 77.
    Slagter, H.A.; Gerringa, L.J.A.; Brussaard, C.P.D. (2016). Phytoplankton Virus Production Negatively Affected by Iron Limitation. Front. Mar. Sci. 3: 156.
    Sobrinho, R.L; Bernardes, M.C.; Abril, G.; Kim, J.-H.; Zell, C.I.; Mortillaro, J.M.; Meziane, T.; Moreira-Turcq, P.; Sinninghe Damsté, J.S. (2016). Spatial and seasonal contrasts of sedimentary organic matter in floodplain lakes of the central Amazon basin. Biogeosciences 13: 467-482.
    Sorokin, D.Y.; Kublanov, I.V.; Yakimov, M.M.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S. (2016). Halanaeroarchaeum sulfurireducens gen. nov., sp. nov., the first obligately anaerobic sulfur-respiring haloarchaeon, isolated from a hypersaline lake. Int. J. Syst. Evol. Microbiol. 66(6): 2377-2381.
    Sorokin, D.Y.; Rakitin, A.L.; Gumerov, V.M.; Beletsky, A.V.; Sinninghe Damsté, J.S.; Mardanov, A.V.; Ravin, N.V. (2016). Phenotypic and Genomic Properties of Chitinispirillum alkaliphilum gen. nov., sp. nov., A Haloalkaliphilic Anaerobic Chitinolytic Bacterium Representing a Novel Class in the Phylum Fibrobacteres. Front. Microbiol. 7: 407.
    Spilling, K.; Schulz, K.G.; Paul, A.J.; Boxhammer, T.; Achterberg, E.P.; Hornick, T.; Lischka, S.; Stuhr, A.; Bermúdez, R.; Czerny, J.; Crawfurd, K.; Brussaard, C.P.D.; Grossart, H.-P.; Riebesell, U. (2016). Effects of ocean acidification on pelagic carbon fluxes in a mesocosm experiment. Biogeosciences 13: 6081-6093.
    Stal, L.J. (2016). The euphotic realm, in: Stal, L.J. et al. (Ed.) The marine microbiome. An untapped source of biodiversity and biotechnological potential. pp. 209-225.
    Stal, L.J. (2016). Coastal sediments: transition from land to sea, in: Stal, L.J. et al. (Ed.) The marine microbiome. An untapped source of biodiversity and biotechnological potential. pp. 283-304.
    Stal, L.J.; Cretoiu, M.S. (2016). Preface, in: Stal, L.J. et al. (Ed.) The marine microbiome. An untapped source of biodiversity and biotechnological potential. pp. ix-xi.
    Steenhauer, L.M.; Wierenga, J.; Carreira, C; Limpens, R.W.A.L.; Koster, A.J.; Pollard, P.C.; Brussaard, C.P.D. (2016). Isolation of cyanophage CrV infecting Cylindrospermopsis raciborskii and the influence of temperature and irradiance on CrV proliferation . Aquat. Microb. Ecol. 78: 11-23.
    Svensson, E.; Schouten, S.; Hopmans, E.C.; Middelburg, J.J.; Sinninghe Damsté, J.S. (2016). Factors Controlling the Stable Nitrogen Isotopic Composition (δ15N) of Lipids in Marine Animals. PLoS One 11(1): e0146321.
    van Bree, L.G.J.; Rijpstra, W.I.C.; Al-Dhabi, N.A.; Verschuren, D.; Sinninghe Damsté, J.S.; de Leeuw, J.W. (2016). Des-A-lupane in an East African lake sedimentary record as a new proxy for the stable carbon isotopic composition of C3 plants. Org. Geochem. 101: 132–139.
    van der Meer, M.T.J. (2016). Cruise report 64PE406, NESSC East Med, Limassol-Istanbul, January 12th-January 28th.. NIOZ: Texel. 60 pp.
    van der Meer, M.T.J. (2016). Cruise report 64PE408, NESSC Black Sea, Istanbul-Istanbul, January 28th-February 5th. NIOZ: Texel. 68 pp.
    van der Meer, M.T.J. (2016). Cruise report 64PE410, NIOZ Baltic 2016, Texel-Nynäshamn (Sweden), May 16th- May 28th. NIOZ: Texel. 119 pp.
    van der Meer, R.; de Boer, M.K.; Liebich, V.; ten Hallers, C.; Veldhuis, M.; Ree, K. (2016). Ballast Water Risk Indication for the North Sea. Coast. Manage. 44(6): 547-568.
    van Duyl, F.C. (2016). NIOZ-Saba Bank/Saba Cruise report : Net coral community calcification and hydrodynamics (Saba Bank/Saba) Caribbean Explorer II, 17/24-31 October 2015 Research cruise contributing to Project : Seawater chemistry of CO2 system and nutrients as drivers of benthic community structure and carbon metabolism of coral reef ecosystems of different trophic status. NIOZ: Texel. 43 pp.
    van Soelen, E.; Ohkouchi, N.; Suga, H.; Sinninghe Damsté, J.S.; Reichart, G.-J. (2016). A late Holocene molecular hydrogen isotope record of the East Asian Summer Monsoon in Southwest Japan. Quatern. Res. 86(3): 287–294.
    van Walraven, L.; Driessen, F.; van Bleijswijk, J.; Bol, A.; Luttikhuizen, P.C.; Coolen, J.; Bos, O.G.; Gittenberger, A.; Schrieken, N.; Langenberg, V.T.; van der Veer, H.W. (2016). Where are the polyps? Molecular identification, distribution and population differentiation of Aurelia aurita jellyfish polyps in the southern North Sea area. Mar. Biol. (Berl.) 163: 172.
    Vasquez Cardenas, D.; Organo Quintana, C.; Meysman, F.J.R.; Kristensen, E.; Boschker, H.T.S. (2016). Species-specific effects of two bioturbating polychaetes on sediment chemoautotrophic bacteria. Mar. Ecol. Prog. Ser. 549: 55-68.
    Vasquez-Cardenas, D. (2016). Bacterial chemoautotrophy in coastal sediments. PhD Thesis. UvA: Amsterdam. ISBN 978-94-91407-33-8. 215 pp.
    Vellekoop, J.; Esmeray-Senlet, S.; Miller, K.G.; Browning, J.V.; Sluijs, A.; van de Schootbrugge, B.; Sinninghe Damsté, J.S.; Brinkhuis, H. (2016). Evidence for Cretaceous-Paleogene boundary bolide “impact winter” conditions from New Jersey, USA. Geology (Boulder Colo.) 44(8): 619-622.
    Visser, P.M.; Verspagen, J.M.H.; Sandrini, G.; Stal, L.J.; Matthijs, H.C.P.; Davis, T.W.; Pearl, H.W.; Huisman, J. (2016). How rising CO2 and global warming may stimulate harmful cyanobacterial blooms. Harmful Algae 54: 145–159.
    Warden, L.; Kim, J.-H; Zell, C.; Vis, G.-J.; de Stigter, H.C.; Bonnin, J.; Sinninghe Damste, J.S. (2016). Examining the provenance of branched GDGTs in the Tagus River drainage basin and its outflow into the Atlantic Ocean over the Holocene to determine their usefulness for paleoclimate applications. Biogeosciences 13: 5719-5738.
    Warden, L.; Van der Meer, M.T.J.; Moros, M.; Sinninghe Damsté, J.S. (2016). Sedimentary alkenone distributions reflect salinity changes in the Baltic Sea over the Holocene. Org. Geochem. 102: 30–44.
    Webb, A.L.; Leedham-Elvidge, E.; Hughes, C.; Hopkins, F.; Malin, G.; Bach, L.T.; Schulz, K.; Crawfurd, K.; Brussaard, C.P.D.; Stuhr, A.; Riebesell, U.; Liss, P.S. (2016). Effect of ocean acidification and elevated fCO2 on trace gas production by a Baltic Sea summer phytoplankton community. Biogeosciences 13: 4595–4613.
    Wigington, C.H.; Sonderegger, D.; Brussaard, C.P.D.; Buchan, A.; Finke, J.F.; Fuhrman, J.A.; Lennon, J.T.; Middelboe, M.; Suttle, C.A.; Stock, C.; Wilson, W.H.; Wommack, K.E.; Wilhelm, S.W.; Weitz, J.S. (2016). Re-examination of the relationship between marine virus and microbial cell abundances. Nature Microbiology 1: 15024.
  • 2015
    Arrieta, J.M.; Mayol, E.; Hansman, R.L.; Herndl, G.J.; Dittmar, T.; Duarte, C.M. (2015). Response to Comment on "Dilution limits dissolved organic carbon utilization in the deep ocean". Science (Wash.) 350(6267): 1483-1483.
    Arrieta, J.M.; Mayol, E.; Hansman, R.L.; Herndl, G.J.; Dittmar, T.; Duarte, C.M. (2015). Dilution limits dissolved organic carbon utilization in the deep ocean. Science (Wash.) 348(6232): 331-333.
    Bale, N.; Hopmans, E.C.; Zell, C.; Sobrinho, R.; Kim, J.H.; Sinninghe Damsté, J.S.; Villareal, T.A.; Schouten, S. (2015). Long chain glycolipids with pentose head groups as biomarkers for marine endosymbiotic heterocystous cyanobacteria. Org. Geochem. 81: 1-7.
    Bale, N.J.; Maat, D.S.; Hopmans, E.C.; Mets, A.; Sinninghe Damsté, J.S.; Brussaard, C.P.D.; Schouten, S. (2015). Fatty acid dynamics during viral infection of Phaeocystis globosa. Aquat. Microb. Ecol. 74: 85–94.
    Blanchet, C.; Contoux, C.; Leduc, G. (2015). Runoff and precipitation dynamics in the Blue and White Nile catchments during the mid-Holocene: A data-model comparison. Quat. Sci. Rev. 130: 222–230.
    Bonin, P.; Vieira, C.; Grimaud, R.; Militon, C.; Cuny, P.; Lima, O.; Guasco, S.; Brussaard, C.P.D.; Michotey, V. (2015). Substrates specialization in lipid compounds and hydrocarbons of Marinobacter genus. Environm. Sc. & Poll. Res. 22: 15347-15359.
    Booij, K.; Tucca, F. (2015). Passive samplers of hydrophobic organic chemicals reach equilibrium faster in the laboratory than in the field. Mar. Pollut. Bull. 98(1-2): 365-367.
    Bottini, C.; Erba, E.; Tiraboschi, D.; Jenkyns, H.C.; Schouten, S.; Sinninghe Damsté, J.S. (2015). Climate variability and ocean fertility during the Aptian Stage. Clim. Past 11: 383-402.
    Brauer, V.S.; Stomp, M.; Bouvier, T.; Fouilland, E.; Leboulanger, C.; Confurius-Guns, V.; Weissing, F.J.; Stal, L.J.; Huisman, J. (2015). Competition and facilitation between the marine nitrogen-fixing cyanobacterium Cyanothece and its associated bacterial community. Front. Microbiol. 5: 795.
    Brocke, H.J.; Wenzhoefer, F.; de Beer, D.; Mueller, B.; van Duyl, F.C.; Nugues, M.M. (2015). High dissolved organic carbon release by benthic cyanobacterial mats in a Caribbean reef ecosystem. NPG Scientific Reports 5(8852): 7 pp.
    Carreira , C. (2015). Microscale spatial distributions of microbes in marine intertidal sediments andphotosynthetic microbial mats. PhD Thesis. UvA: Amsterdam. 152 pp.
    Carreira, C; Piel, T; Staal, M.; Stuut, J.-B; Middelboe, M.; Brussaard, C.P.D. (2015). Microscale spatial distributions of microbes and viruses in intertidal photosynthetic microbial mats. SpringerPlus 4: 239.
    Carreira, C; Staal, M.; Falkoski, D.; de Vries, R.P.; Middelboe, M.; Brussaard, C.P.D. (2015). Disruption of photoautotrophic intertidal mats by filamentous fungi. Environ. Microbiol. 17(8): 2910-2921. 10.1111/1462-2920.12835
    Carreira, C; Staal, M.; Middelboe, M.; Brussaard, C.P.D. (2015). Counting viruses and bacteria in photosynthetic microbial mats. Appl. Environ. Microbiol. 81(6): 2149-2155.
    Carreira, C; Staal, M.; Middelboe, M.; Brussaard, C.P.D. (2015). Autofluorescence imaging system to discriminate and quantify the distribution of benthic cyanobacteria and diatoms. Limnol. Oceanogr., Methods 13(4): 169–177.
    Cretoiu, M.S.; Berini, F; Kielak, A.M.; Marinelli, F.; Van Elsas, J.D. (2015). A novel salt-tolerant chitobiosidase discovered by genetic screening of a metagenomic library derived from chitin-amended agricultural soil. Appl. Microbiol. Biotechnol. 99(19): 8199-8215.
    de Jonge, C. (2015). Sources and sinks of branched tetraether lipids and bacteriohopanepolyols in a major river system (Yenisei River – Kara Sea: Implications for their application as geochemical tracers. PhD Thesis. Universiteit Utrecht (UU): Utrecht. ISBN 978-94-6203-808-0. 254 pp.
    De Jonge, C.; Stadnitskaia, A.; Fedotov, A.; Sinninghe Damsté, J.S. (2015). Impact of riverine suspended particulate matter on the branched glycerol dialkyl glycerol tetraether composition of lakes: The outflow of the Selenga River in Lake Baikal (Russia). Org. Geochem. 83-84: 241-252.
    De Jonge, C.; Stadnitskaia, A.; Hopmans, E.C.; Cherkashov, G.; Fedotov, A.; Streletskaya, I.D.; Vasiliev, A.A.; Sinninghe Damsté, J.S. (2015). Drastic changes in the distribution of branched tetraether lipids in suspended matter and sediments from the Yenisei River and Kara Sea (Siberia): Implications for the use of brGDGT-based proxies in coastal marine sediment. Geochim. Cosmochim. Acta 165: 200-225.
    Dessandier, P.-A.; Bonnin, J.; Kim, J.-H.; Bichona, S.; Grémare, A.; Deflandre, B.; de Stigter, H.; Malaizé, B. (2015). Lateral and vertical distributions of living benthic foraminifera off the Douro River (western Iberian margin): Impact of the organic matter quality. Mar. Micropaleontol. 120: 31–45.
    Fan, H.; Bolhuis, H.; Stal, L.J. (2015). Nitrification and Nitrifying Bacteria in a Coastal Microbial Mat. Front. Microbiol. 6: 1367.
    Fan, H.; Bolhuis, H.; Stal, L.J. (2015). Drivers of the dynamics of diazotrophs and denitrifiers in North Sea bottom waters and sediments. Front. Microbiol. 6: 738.
    Fan, H.; Bolhuis, H.; Stal, L.J. (2015). Denitrification and the denitrifier community in coastal microbial mats. FEMS Microbiol. Ecol. 91(3): 1-11.
    Grosse, J.; Van Breugel, P.; Boschker, H.T.S. (2015). Tracing carbon fixation in phytoplankton—compound specific and total 13C incorporation rates. Limnol. Oceanogr., Methods 13(6): 288-302.
    Günther, F.; Witt, R.; Schouten, S.; Mausbacher, R.; Daut, G.; Zhu, L.; Xu, B.Q.; Yao, T.; Gleixner, G. (2015). Quaternary ecological responses and impacts of the Indian Ocean Summer Monsoon at Nam Co, Southern Tibetan Plateau. Quat. Sci. Rev. 112: 66-77.
    Hansman, R.L.; Dittmar, T.; Herndl, G.J. (2015). Conservation of dissolved organic matter molecular composition during mixing of the deep water masses of the northeast Atlantic Ocean. Mar. Chem. 177: 288–297.
    Heinzelmann, S.M. (2015). Metabolism of microbial communities in the environment : A compound-specific stable hydrogen isotope approach. PhD Thesis. Utrecht University: Utrecht. ISBN 9789462039599. 187 pp.
    Heinzelmann, S.M.; Chivall, D.; M'boule, D.; Sinke-Schoen, D.; Villanueva, L.; Sinninghe Damsté, J.S.; Schouten, S.; van der Meer, M.T.J. (2015). Comparison of the effect of salinity on the D/H ratio of fatty acids of heterotrophic and photoautotrophic microorganisms. FEMS Microbiol. Lett. 362(10).
    Heinzelmann, S.M.; Villanueva, L. ; Sinke-Schoen, D.; Sinninghe Damsté, J.S.; Schouten, S.; Van der Meer, M.T.J. (2015). Impact of metabolism and growth phase on the hydrogen isotopic composition of microbial fatty acids. Front. Microbiol. 6: 408.
    Javaheri, N.; Dries, R.; Burson, A.; Stal, L.J.; Sloot, P.M.A.; Kaandorp, J.A. (2015). Temperature affects the silicate morphology in a diatom. NPG Scientific Reports 5: 11652.
    Jean, M.R.N.; Gonzalez-Rizzo, S.; Gauffre-Autelin, P.; Lengger, S.K.; Schouten, S.; Gros, O. (2015). Two New Beggiatoa Species Inhabiting Marine Mangrove Sediments in the Caribbean. PLoS One 10(2): e0117832.
    Kaiser, J.; Schouten, S.; Kilian, R.; Arz, H.W.; Lamy, F.; Sinninghe Damsté, J.S. (2015). Isoprenoid and branched GDGT-based proxies for surface sediments from marine, fjord and lake environments in Chile. Org. Geochem. 89-90: 117-127.
    Kasper, S. (2015). Reconstruction of past changes in ocean salinity - a compound specific stable hydrogen isotope approach. PhD Thesis. Universiteit Utrecht (UU): Utrecht. ISBN 978-94-6203-839-4. 140 pp.
    Kasper, S.; van der Meer, M.T.J.; Castañeda, I.S; Tjallingii, R.; Brummer, G.J.A.; Sinninghe Damsté, J.S.; Schouten, S. (2015). Testing the alkenone D/H ratio as a paleo indicator of sea surface salinity in a coastal ocean margin (Mozambique Channel). Org. Geochem. 78: 62-68.
    Kaur, G.; Mountain, B.W.; Stott, M.; Hopmans, E.C.; Pancrost, R.J. (2015). Temperature and pH control on lipid composition of silica sinters from diverse hot springs in the Taupo Volcanic Zone, New Zealand. Extremophiles 19: 327-344.
    Kim, J.-H.; Ludwig, W.; Buscail, R.; Dorhout, D.; Sinninghe Damsté, J.S. (2015). Tracing tetraether lipids from source to sink in the Rhône River system (NW Mediterranean). Front. Earth Sci. 3: 22.
    Kim, J.H.; Schouten, S.; Rodrigo-Gámiz, M.; Rampen, S.W.; Marino, G.; Huguet, C.; Helmke, P.; Buscail, R.; Hopmans, E.C.; Pross, J.; Sangiorgi, F.; Middelburg, J.; Sinninghe Damsté, J.S. (2015). Influence of deep-water derived isoprenoid tetraether lipids on the TEX h 86 paleothermometer in the Mediterranean Sea. Geochim. Cosmochim. Acta 150: 125–141.
    Koopmans, M.; van Rijswijk, P.; Boschker, H.T.S.; Houtekamer, M.; Martens, D.; Wijffels, R.H. (2015). Seasonal Variation of Fatty Acids and Stable Carbon Isotopes in Sponges as Indicators for Nutrition: Biomarkers in Sponges Identified. Mar. Biotechnol. 17(1): 43-54.
    Kulichevskaya, I.S.; Ivanova, A.; Detkova, E.N.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Dedysh, S.N. (2015). Planctomicrobium piriforme gen. nov., sp. nov., a stalked planctomycete from a littoral wetland of a boreal lake. Int. J. Syst. Evol. Microbiol. 65(5): 1659-1665.
    Le Guitton, M.; Soetaert, K.; Sinninghe Damsté, J.S.; Middelburg, J.J. (2015). Biogeochemical consequences of vertical and lateral transport of particulate organic matter in the southern North Sea: A multiproxy approach. Est., Coast. and Shelf Sci. 165: 117-127.
    Leopold, M.F.; Begeman, L.; van Bleijswijk, J.D.L.; IJsseldijk, L.L.; Witte, H.; Gröne, A. (2015). Exposing the grey seal as a major predator of harbour porpoises. Proc. R. Soc. Lond. (Biol. Sci.) 282(1802): 20142429.
    Lønborg, C.; Yokokawa, T.; Herndl, G.J.; Alvarez-Salgado, X.A. (2015). Production and degradation of fluorescent dissolved organic matter in surface waters of the eastern north Atlantic ocean. Deep-Sea Res. Pt. A: Oceanogr. Res. Pap.A: Oceanogr. Res. Pap 96: 28–37.
    Malits, A.; Cattaneo, R.; Sintes, E.; Gasol, J.M.; Herndl, G.J.; Weinbauer, M.G. (2015). Potential impacts of black carbon on the marine microbial community. Aquat. Microb. Ecol. 75: 27-42.
    Martínez Martínez, J.; Boere, A.; Gilg, I.; van Lent, J.W.M.; Witte, H.; van Bleijswijk, J.D.L.; Brussaard, C.D.P. (2015). New lipid envelope-containing dsDNA virus isolates infecting Micromonas pusilla reveal a separate phylogenetic group. Aquat. Microb. Ecol. 74: 17-28.
    Moerdijk-Poortvliet, T.C.W.; Schierbeek, H.; Houtekamer, M.; van Engeland, T.; Derrien, D.; Stal, L.J.; Boschker, H.T.S. (2015). Comparison of gas chromatography/isotope ratio mass spectrometry and liquid chromatography/isotope ratio mass spectrometry for carbon stable-isotope analysis of carbohydrates. Rapid Comm. Mass Spectrom. 29: 1205-1214.
    Mojica, K.D.A. (2015). General discussion, in: Mojica, K.D.A. Viral lysis of marine microbes in relation to vertical stratification. pp. 225-232
    Mojica, K.D.A. (2015). Summary, in: Mojica, K.D.A. Viral lysis of marine microbes in relation to vertical stratification. pp. 235-238
    Mojica, K.D.A. (2015). Samenvatting, in: Mojica, K.D.A. Viral lysis of marine microbes in relation to vertical stratification. pp. 239-242
    Mojica, K.D.A. (2015). Acknowledgements, in: Mojica, K.D.A. Viral lysis of marine microbes in relation to vertical stratification. pp. 246-247
    Mojica, K.D.A. (2015). Viral lysis of marine microbes in relation to vertical stratification. PhD Thesis. Universiteit van Amsterdam: Amsterdam. ISBN 978-94-91407-20-8. 247 pp.
    Mojica, K.D.A. (2015). General Introduction, in: Mojica, K.D.A. Viral lysis of marine microbes in relation to vertical stratification. pp. 9-25
    Mojica, K.D.A.; Brussaard, C.P.D. (2015). Factors affecting virus dynamics and microbial host-virus interactions in marine environments, in: Mojica, K.D.A. Viral lysis of marine microbes in relation to vertical stratification. pp. 27-72
    Mojica, K.D.A.; Brussaard, C.P.D. (2015). Heterotrophic prokaryotic growth and loss rates along a latitudinal gradient in the Northeast Atlantic Ocean, in: Mojica, K.D.A. Viral lysis of marine microbes in relation to vertical stratification. pp. 173-204
    Mojica, K.D.A.; Brussaard, C.P.D. (2015). The viral shunt in a stratified Northeast Atlantic Ocean, in: Mojica, K.D.A. Viral lysis of marine microbes in relation to vertical stratification. pp. 207-222
    Mojica, K.D.A.; Evans, C.; Brussaard, C.P.D. (2015). Flow cytometric enumeration of marine viral populations at low abundances, in: Mojica, K.D.A. Viral lysis of marine microbes in relation to vertical stratification. pp. 159-171
    Mojica, K.D.A.; Huisman, J.; Wilhelm, S.W.; Brussaard, C.P.D. (2015). Latitudinal variation in virus-induced mortality of phytoplankton across the North Atlantic Ocean, in: Mojica, K.D.A. Viral lysis of marine microbes in relation to vertical stratification. pp. 119-156
    Mojica, K.D.A.; van de Poll, W.H.; Kehoe, M.; Huisman, J.; Timmermans, K.R.; Buma, A.G.J.; Van der Woerd, H.J.; Hahn-Woernle, L.; Dijkstra, H.A.; Brussaard, C.P.D. (2015). Phytoplankton community structure in relation to vertical stratification along a north-south gradient in the Northeast Atlantic Ocean, in: Mojica, K.D.A. Viral lysis of marine microbes in relation to vertical stratification. pp. 75-116
    Mojica, K.D.A.; van de Poll, W.H.; Kehoe, M.; Huisman, J.; Timmermans, K.R.; Buma, A.G.J.; Van der Woerd, H.J.; Hahn-Woernle, L.; Dijkstra, H.A.; Brussaard, C.P.D. (2015). Phytoplankton community structure in relation to vertical stratification along a north-south gradient in the Northeast Atlantic Ocean. Limnol. Oceanogr. 60(5): 1498–1521.
    Mollenhauer, G.; Basse, A.; Kim, J.H.; Sinninghe Damsté, J.S.; Fischer, G. (2015). A four-year record of UKk'37- and TEX86-derived sea surface temperature estimates from sinking particles in the filamentous upwelling region off Cape Blanc, Mauritania. Deep-Sea Res. Pt. A: Oceanogr. Res. Pap.A: Oceanogr. Res. Pap 97: 67–79.
    Moore, E.K.; Hopmans, E.C.; Rijpstra, W.I.C.; Sánchez-Andrea, I.; Villanueva, L.; Wienk, H.; Schoutsen, F; Stams, A.J.M.; Sinninghe Damsté, J.S. (2015). Lysine and novel hydroxylysine lipids in soil bacteria: amino acid membrane lipid response to temperature and pH in Pseudopedobacter saltans. Front. Microbiol. 6: 637.
    Moore, E.K.; Villanueva, L.; Hopmans, E.C.; Rijpstra, W.I.C.; Mets, A.; Dedysh, S.N.; Sinninghe Damsté, J.S. (2015). Abundant Trimethylornithine Lipids and Specific Gene Sequences Are Indicative of Planctomycete Importance at the Oxic/Anoxic Interface in Sphagnum-Dominated Northern Wetlands. Appl. Environ. Microbiol. 81(18): 6333-6344.
    Mueller, B. (2015). Shedding light on DOC release by benthic primary producers and its consumption by bioeroding sponges. Utrecht Studies in Earth Sciences, 94. PhD Thesis. [S.n.]: [s.l.]. ISBN 978-90-6266-407-8. 135 pp.
    Nieto-Moreno, V.; Martínez-Ruiz, F.; Gallego-Torres, D.; Giralt, S.; García-Orellana, J.; Masque, P.; Sinninghe Damsté, J.S.; Ortega-Huertas, M. (2015). Palaeoclimate and palaeoceanographic conditions in the westernmost Mediterranean over the last millennium: an integrated organic and inorganic approach. J. Geol. Soc. Lond. 172(2): 264-271.
    Pascal, P.-Y.; Bellemare, C.; Sterrer, W.; Boschker, H.T.S.; Gonzalez-Rizzo, S.; Gros, O. (2015). Diet of Haplognathia ruberrima (Gnathostomulida) in a Caribbean marine mangrove. Mar. Ecol. (Berl.) 36: 246-257.
    Petrick, B.F.; McClymont, E.L.; Marret, F.; van der Meer, M.T.J. (2015). Changing surface water conditions for the last 500ka in the Southeast Atlantic: Implications for variable influences of Agulhas leakage and Benguela upwelling. Paleoceanography 30(9): 1153–1167.
    Poulton, S.W.; Henkel, S.; März, C.; Urquhart, H.; Flögel, S.; Kasten, S.; Sinninghe Damsté, J.S.; Wagner, Th. (2015). A continental-weathering control on orbitally driven redox-nutrient cycling during Cretaceous Oceanic Anoxic Event 2. Geology (Boulder Colo.) 43(11): 963–966.
    Quemin, E.R. J.; Pietilä, M.K.; Oksanen, H.M.; Forterre, P.; Rijpstra, W.I.C.; Schouten, S.; Bamford, D,H,; Prangishvili, D.; Krupovica, M. (2015). Sulfolobus Spindle-Shaped Virus 1 Contains Glycosylated Capsid Proteins, a Cellular Chromatin Protein, and Host-Derived Lipids. J. Virol. 89(22): 11681-11691.
    Rodrigo-Gámiz, M.; Rampen, S.W.; de Haas, H.; Baas, M.; Schouten, S.; Sinninghe Damsté, J.S. (2015). Constraints on the applicability of the organic temperature proxies Uk'37, TEX86 and LDI in the subpolar region around Iceland. Biogeosciences 12(22).
    Romero, O.E.; Crosta, X.; Kim, J.-H.; Pichevin, L.; Crespin, J. (2015). Rapid longitudinal migrations of the filament front off Namibia (SE Atlantic) during the past 70 kyr. Global Planet. Change 125: 1-12.
    Romero, O.E.; Kim, J.-H.; Bárcena, M.A.; Hall, I.R.; Zahn, R.; Schneider, R. (2015). High-latitude forcing of diatom productivity in the southern Agulhas Plateauduring the past 350kyr. Paleoceanography 30(2): 118-132.
    Schoon, P.L.; Heilmann-Clausen, C.; Schultz, B.P.; Sinninghe Damsté, J.S.; Schouten, S. (2015). Warming and environmental changes in the eastern North Sea Basin during the Palaeocene–Eocene Thermal Maximum as revealed by biomarker lipids. Org. Geochem. 78: 79–88.
    Simon, M.H.; Gong, X.; Hall, I.R.; Ziegler, M.; Barker, S.; Knorr, G.; van der Meer, M.T.J.; Kasper, S.; Schouten, S. (2015). Salt exchange in the Indian-Atlantic Ocean Gateway since the Last Glacial Maximum: A compensating effect between Agulhas Current changes and salinity variations? Paleoceanography 30(10): 1318–1327.
    Sintes, E.; Ouillon, N.; Herndl, G.J. (2015). Macroecological patterns of archaeal ammonia oxidizers in the Atlantic Ocean. Mol. Ecol. 24: 4931–4942 .
    Sollai, M.; Hopmans, E.C.; Schouten, S.; Keil, R.G.; Sinninghe Damsté, J.S. (2015). Intact polar lipids of Thaumarchaeota and anammox bacteria as indicators of N cycling in the eastern tropical North Pacific oxygen-deficient zone. Biogeosciences 12: 4725-4737.
    Sorokin, D.Y.; Abbas, B.; Merkel, A.Y; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Sukhacheva, M.V; van Loosdrecht, M.C.M. (2015). Methanosalsum natronophilum sp. nov., and Methanocalculus alkaliphilus sp. nov., haloalkaliphilic methanogens from hypersaline soda lakes. Int. J. Syst. Evol. Microbiol. 65: 3739-3745.
    Steger, K.; Premke, K.; Gudasz, C.; Boschker, H.T.S.; Tranvik, L.J. (2015). Comparative study on bacterial carbon sources in lake sediments: the role of methanotrophy. Aquat. Microb. Ecol. 76: 39–47.
    Stehouwer, P.P.; Buma, A.; Peperzak, L. (2015). A comparison of six different ballast water treatment systems based on UV radiation, electrochlorination and chlorine dioxide. Environ. Technol. 36(16): 2094-2104.
    Svensson, E.; Schouten, S.; Stam, A.; Middelburg, J.J.; Sinninghe Damsté, J.S. (2015). Compound-specific stable isotope analysis of nitrogen-containing intact polar lipids. Rapid Comm. Mass Spectrom. 29(23): 2263–2271.
    van Bleijswijk, J.D.L.; Whalen, C.; Duineveld, G.C.A.; Lavaleye, M.S.S.; Witte, H.J.; Mienis, F (2015). Microbial assemblages on a cold-water coral mound at the SE Rockall Bank (NE Atlantic): interactions with hydrography and topography. Biogeosciences 12(14): 4493-4496.
    van de Poll, W.H.V.; Boute, P.G.; Rozema, P.D.; Buma, A.; Kulk, G.; Rijkenberg, M.J. (2015). Sea surface temperature control of taxon specific phytoplankton production along an oligotrophic gradient in the Mediterranean Sea. Mar. Chem. 177(Part 3): 536–544.
    van der Meer, M.T.J.; Benthien, A.; French, K.L.; Epping, E.; Zondervan, I.; Reichart, G.J.; Bijma, J.; Sinninghe Damsté, J.S.; Schouten, S. (2015). Large effect of irradiance on hydrogen isotope fractionation of alkenones in Emiliania huxleyi. Geochim. Cosmochim. Acta 160: 16-24.
    van Helmond, N.A.G.M.; Sluijs, A.; Sinninghe Damsté, J.S.; Reichart, G.-J.; Voigt, S.; Erbacher, J.; Pross, J.; Brinkhuis, H. (2015). Freshwater discharge controlled deposition of Cenomanian–Turonian black shales on the NW European epicontinental shelf (Wunstorf, northern Germany). Clim. Past 11: 495-508.
    van Slooten, C.; Peperzak, L.; Buma, A.G.J. (2015). Assessment of didecyldimethylammonium chloride as a ballast water treatment method. Environ. Technol. 36(4): 435-449.
    van Slooten, C.; Wijers, T,; Buma, A.G.J.; Peperzak, L. (2015). Development and testing of a rapid, sensitive ATP assay to detect living organisms in ballast water. J. Appl. Phycol. 27: 2299-2312.
    Vasiliev, I.; Reichart, G.-J.; Grothe, A.; Sinninghe Damsté, J.S.; Krijgsman, W.; Sangiorgi, F.; Weijers, J.W.H; van Róij, L. (2015). Recurrent phases of drought in the upper Miocene of the Black Sea region. Palaeogeogr. Palaeoclimatol. Palaeoecol. 423: 18-31.
    Vasquez-Cardenas, D.; van de Vossenberg, J.; Polerecky, L.; Malkin, S.Y.; Schauer, R.; Hidalgo-Martinez, S.; Confurius-Guns, V.; Middelburg, J.J.; Meysman, F.J.R.; Boschker, H.T.S. (2015). Microbial carbon metabolism associated with electrogenic sulphur oxidation in coastal sediments. ISME J. 9(9): 1966-1978.
    Vellekoop, J.; Smit, J.; van de Schootbrugge, B.; Weijers, J.W.; Galeotti, S.; Sinninghe Damsté, J.S.; Brinkhuis, H. (2015). Palynological evidence for prolonged cooling along the Tunisian continental shelf following the K–Pg boundary impact. Palaeogeogr. Palaeoclimatol. Palaeoecol. 426: 216-228.
    Villanueva, L. ; Schouten, S.; Sinninghe Damsté, J.S. (2015). Depth-related distribution of a key gene of the tetraether lipid biosynthetic pathway in marine Thaumarchaeota. Environ. Microbiol. 17(10): 3527–3539.
    Weber, Y.; De Jonge, C.; Rijpstra, W.I.C.; Hopmans, E.C.; Stadnitskaia, A.; Schubert, C.J.; Lehmann, M.F.; Sinninghe Damsté, J.S.; Niemann, H. (2015). Identification and carbon isotope composition of a novel branched GDGT isomer in lake sediments: Evidence for lacustrine branched GDGT production. Geochim. Cosmochim. Acta 154: 118-129.
    Zell, C.; Kim, J-H; Dorhout, D.; Baas, M.; Baas, M.; Sinninghe Damsté, J.S. (2015). Sources and distributions of branched tetraether lipids and crenarchaeol along the Portuguese continental margin: Implications for the BIT index. Cont. Shelf Res. 96: 34-44.
    Zenke, R.; von Gronau, S.; Bolhuis, H.; Gruska, M.; Pfeiffer, F; Oesterhelt, D. (2015). Fluorescence microscopy visualization of halomucin, a secreted 927 kDa protein surrounding Haloquadratum walsbyi cells. Front. Microbiol. 6: article 249.
  • 2014
    Abouchami, W.; Galer, S.J.G.; de Baar, H.J.W.; Middag, R.; Vance, D.; Zhao, Y.; Klunder, M.; Mezger, K.; Feldmann, H.; Andreae, M.O. (2014). Biogeochemical cycling of cadmium isotopes in the Southern Ocean along the Zero Meridian. Geochim. Cosmochim. Acta 127: 348-367.
    Abril, G.; Martinez, J.M.; Artigas, L.F.; Moreira-Turcq, P.; Benedetti, M.F.; Vidal, L.; Meziane, T.; Kim, J.-H.; Bernardes, M.C.; Savoye, N.; Deborde, J.; Souza, E.L.; Alberic, P.; de Souza, M.F.L.; Roland, F. (2014). Amazon River carbon dioxide outgassing fuelled by wetlands. Nature (Lond.) 505(7483): 395-398.
    Agawin, N.S.R.; Benavides, M.; Busquets, A.; Ferriol, P.; Stal, L.J.; Aristegui, J. (2014). Dominance of unicellular cyanobacteria in the diazotrophic community in the Atlantic Ocean. Limnol. Oceanogr. 59(2): 623-637.
    Ahmed, M.; Stal, L.; Hasnain, S. (2014). The morphology and bioactivity of the rice field cyanobacterium Leptolyngbya. Rev. Biol. Trop. 62(3): 1251-1260.
    Ahmed, M.; Stal, L.J.; Hasnain, S. (2014). Biofilm Formation and Indole-3-Acetic Acid Production by Two Rhizospheric Unicellular Cyanobacteria. J. Microbiol. Biotechnol. 24(8): 1015-1025.
    Ahmed, M.; Wijnholds, A.; Stal, L.J.; Hasnain, S. (2014). Isolation, characterization and localization of extracellular polymeric substances from the cyanobacterium Arthrospira platensis strain MMG-9. Eur. J. Phycol. 49(2): 143-150.
    Bale, N.; Villanueva, L.; Fan, H.; Hopmans, E.C.; Schouten, S.; Sinninghe Damsté, J.S.; Stal, L.J. (2014). Occurrence and activity of anammox bacteria in surface sediments of the southern North Sea. FEMS Microbiol. Ecol. 89(1): 99–110.
    Bauersachs, T.; Schouten, S.; Schwark, L. (2014). Characterization of the sedimentary organic matter preserved in Messel oil shale by bulk geochemistry and stable isotopes. Palaeogeogr. Palaeoclimatol. Palaeoecol. 410: 390-400.
    Bauersachs, T.; Stal, L.J.; Grego, M.; Schwark, L.; Schwark, L. (2014). Temperature induced changes in the heterocyst glycolipid composition of N2 fixing heterocystous cyanobacteria. Org. Geochem. 69: 98-105.
    Berke, M.A.; Johnson, T.C.; Werne, J.P.; Livingstone, D.R.; Grice, K.; Schouten, S.; Sinninghe Damsté, J.S. (2014). Characterization of the last deglacial transition in tropical East Africa: Insights from Lake Albert. Palaeogeogr. Palaeoclimatol. Palaeoecol. 409: 1-8.
    Blanchet, C.; Frank, M.; Schouten, S. (2014). Asynchronous Changes in Vegetation, Runoff and Erosion in the Nile River Watershed during the Holocene. PLoS One 9(12): e115958.
    Blyth, A.J.; Jex, C.N.; Baker, A.; Khan, S.J.; Schouten, S. (2014). Contrasting distributions of glycerol dialkyl glycerol tetraethers (GDGTs) in speleothems and associated soils. Org. Geochem. 69: 1-10.
    Bolhuis, H.; Schluepmann, H.; Kristalijn, J.; Sulaiman, Z.; Marshall, D.J. (2014). Molecular analysis of bacterial diversity in mudflats along the salinity gradient of an acidified tropical Bornean estuary (South East Asia). Aquatic Biosystems 10(10): 13 pp.
    Booij, K.; van Bommel, R.; van Aken, H.M.; van Haren, H.; Brummer, G.J.A.; Ridderinkhof, H. (2014). Passive sampling of nonpolar contaminants at three deep-ocean sites. Environ. Pollut. 195: 101-108.
    Boschker, H.T.S.; Vasquez-Cardenas, D.; Bolhuis, H.; Moerdijk-Poortvliet, T.C.W.; Moodley, L. (2014). Chemoautotrophic Carbon Fixation Rates and Active Bacterial Communities in Intertidal Marine Sediments. PLoS One 9(7): e101443 1-12.
    Buckles, L.K.; Weijers, J.W.H.; Tran, X.-M.; Waldron, S.; Sinninghe Damsté, J.S. (2014). Provenance of tetraether membrane lipids in a large temperate lake (Loch Lomond, UK): implications for glycerol dialkyl glycerol tetraether (GDGT)-based palaeothermometry. Biogeosciences 11: 5539-5563.
    Buckles, L.K.; Weijers, J.W.H.; Verschuren, D.; Sinninghe Damsté, J.S. (2014). Sources of core and intact branched tetraether membrane lipids in the lacustrine environment: Anatomy of Lake Challa and its catchment, equatorial East Africa. Geochim. Cosmochim. Acta 140: 106-126.
    Carnat, G.; Zhou, J.; Papakyriakou, T.; Delille, B.; Goossens, T.; Haskell, T.; Schoemann, V.; Fripiat, F.; Rintala, J.-M.; Tison, J.-L. (2014). Physical and biological controls on DMS,P dynamics in ice shelf-influenced fast ice during a winter-spring and a spring-summer transitions. J. Geophys. Res. Oceans(119): 2882-2905.
    Chevalier, N.; Bouloubassi, I.; Stadnitskaia, A.; Taphanel, M.H.; Sinninghe Damsté, J.S. (2014). Lipid biomarkers for anaerobic oxidation of methane and sulphate reduction in cold seep sediments of Nyegga pockmarks (Norwegian margin): discrepancies in contents and carbon isotope signatures. Geo-Mar. Lett. 34(2-3): 269-280.
    Chivall, D.; M'Boule, D.; Sinke-Schoen, D.; Sinninghe Damsté, J.S.; Schouten, S.; van der Meer, M.T.J. (2014). Impact of salinity and growth phase on alkenone distributions in coastal haptophytes. Org. Geochem. 67: 31-34.
    Crowe, M.A.; Power, J.F.; Morgan, X.C.; Dunfield, P.F.; Lagutin, K.; Rijpstra, W.I.C.; Vyssotski, M.; Sinninghe Damsté, J.S.; Houghton, K.M.; Ryan, J.L.J.; Stott, M.B. (2014). Pyrinomonas methylaliphatogenes gen. nov., sp. nov., a novel group 4 thermophilic member of the phylum Acidobacteria from geothermal soils. Int. J. Syst. Evol. Microbiol. 64: 220-227.
    De Corte, D.; Lekunberri, I.; Sintes, E.; Garcia, J.A.L.; Gonzalez, S.; Herndl, G.J. (2014). Linkage between copepods and bacteria in the North Atlantic Ocean. Aquat. Microb. Ecol. 72: 215-225.
    De Jonge, C.; Hopmans, E.C.; Zell, C.; Kim, J.H.; Schouten, S.; Sinninghe Damsté, J.S. (2014). Occurrence and abundance of 6-methyl branched glycerol dialkyl glycerol tetraethers in soils: Implications for palaeoclimate reconstruction. Geochim. Cosmochim. Acta 141: 97–112.
    De Jonge, C.; Stadnitskaia, A.; Hopmans, E.C.; Cherkashov, G.; Fedotov, A.; Sinninghe Damsté, J. (2014). In situ produced branched glycerol dialkyl glycerol tetraethers in suspended particulate matter from the Yenisei River, Eastern Siberia. Geochim. Cosmochim. Acta 125: 476-491.
    de Kluijver, A.; Schoon, P.L.; Downing, J.A.; Schouten, S.; Middelburg, J.J. (2014). Stable carbon isotope biogeochemistry of lakes along a trophic gradient. Biogeosciences 11: 6265– 6276.
    den Haan, J.; Visser, P.M.; Ganase, A.E.; Gooren, E.E.; Stal, L.J.; van Duyl, F.C.; Vermeij, M.J.A.; Huisman, J. (2014). Nitrogen fixation rates in algal turf communities of a degraded versus less degraded coral reef. Coral Reefs 33(4): 1003-1015.
    Derrien, D.; Plain, C.; Courty, P.-E.; Gelhage, L.; Moerdijk-Poortvliet, T.C.W.; Thomas, F; Versini, A.; Zeller, B.; Koutika, L.-S.; Boschker, H.T.S.; Epron, D. (2014). Does the addition of labile substrate destabilise old soil organic matter? Soil Biol. Biochem. 76: 149-160.
    Douglas, P.M.J.; Affek, H.P.; Ivany, L.C.; Houben, A.J.P.; Sijp, W.P.; Sluijs, A.; Schouten, S.; Pagani, M. (2014). Pronounced zonal heterogeneity in Eocene southern high-latitude sea surface temperatures. Proc. Natl. Acad. Sci. U.S.A. 111(18): 6582-6587.
    Frieling, J.; Iakovleva, A.I.; Reichart, G.-J.; Aleksandrova, G.N.; Gnibidenko, Z.N.; Schouten, S.; Sluijs, A. (2014). Paleocene–Eocene warming and biotic response in the epicontinental West Siberian Sea. Geology (Boulder Colo.) 42(9): 767-770.
    Gallego-Torres, D.; Romero, O.E.; Martínez-Ruiz, F.; Kim, J.-H.; Donner, B.; Ortega-Huertas, M. (2014). Rapid bottom-water circulation changes during the last glacial cycle in the coastal low-latitude NE Atlantic. Quatern. Res. 81(2): 330-338.
    Giusberti, L.; Bannikov, A.; Galazzo, F.B.; Fornaciari, E.; Frieling, J.; Luciani, V.; Papazzoni, C.A.; Roghi, G.; Schouten, S.; Sluijs, A.; Bosellini, F.R.; Zorzin, R. (2014). A new Fossil-Lagerstätte from the Lower Eocene of Lessini Mountains (northern Italy): A multidisciplinary approach. Palaeogeogr. Palaeoclimatol. Palaeoecol. 403: 1-15.
    Gros, J.; Nabi, D.; Wu¨rz, B.; Wick, L.Y.; Brussaard, C.P.D.; Huisman , J.; van der Meer, J.R.; Reddy, C.M.; Arey, J.S. (2014). First Day of an Oil Spill on the Open Sea: Early Mass Transfers of Hydrocarbons to Air and Water. Environ. Sci. Technol. 48: 9400-9411.
    Günther, F.; Thiele, A.; Gleixner, G.; Xu, B.Q.; Yao, T.; Schouten, S. (2014). Distribution of bacterial and archaeal ether lipids in soils and surface sediments of Tibetan lakes: Implications for GDGT-based proxies in saline high mountain lakes. Org. Geochem. 67: 19-30.
    Harman, C.; Booij, K. (2014). Letter to the Editor Concerning the Viewpoint; "Recognizing the Limitations of Performance Reference Compound (PRC)-Calibration Technique in Passive Water Sampling". Environ. Sci. Technol. 48(1): 3.
    Heinzelmann, S.M.; Bale, N.J.; Hopmans, E.C.; Sinninghe Damsté, J.S.; Schouten, S.; van der Meer, M.T.J. (2014). Critical Assessment of Glyco- and Phospholipid Separation by Using Silica Chromatography. Appl. Environ. Microbiol. 80(1): 360-365.
    Jung, M.Y.; Park, S.J.; Kim, S.J.; Kim, J.G.; Sinninghe Damsté, J.S.; Jeon, C.O.; Rhee, S.K. (2014). A Mesophilic, Autotrophic, Ammonia-Oxidizing Archaeon of Thaumarchaeal Group I.1a Cultivated from a Deep Oligotrophic Soil Horizon. Appl. Environ. Microbiol. 80(12): 3645-3655.
    Kaserzon, S.L.; Hawker, D.W.; Booij, K.; O'Brien, D.S.; Kennedy, K.; Vermeirssen, E.L.M.; Mueller, J.F. (2014). Passive sampling of perfluorinated chemicals in water: In-situ calibration. Environ. Pollut. 186: 98-103.
    Kaserzon, S.L.; Hawker, D.W.; Kennedy, K.; Bartkow, M.; Carter, S.; Booij, K.; Mueller, J.F. (2014). Characterisation and comparison of the uptake of ionizable and polar pesticides, pharmaceuticals and personal care products by POCIS and Chemcatchers. Environ. Sci. Process. Impacts 11: 2517–2526.
    Kasper, S.; van der Meer, M.T.J.; Mets, A.; Zahn, R.; Sinninghe Damsté, J.S.; Schouten, S. (2014). Salinity changes in the Agulhas leakage area recorded by stable hydrogen isotopes of C37 alkenones during Termination I and II. Clim. Past 10(1): 251-260.
    Kim, J.-H.; Buscail, R.; Fanget, A.-S.; Eyrolle-Boyer, F.; Bassetti, M.-A.; Dorhout, D.; Baas, M.; Berné, S.; Sinninghe Damsté, J.S. (2014). Impact of river channel shifts on tetraether lipids in the Rhône prodelta (NW Mediterranean): Implication for the BIT index as an indicator of palaeoflood events. Org. Geochem. 75: 99-108.
    Kool, D.M.; Talbot, H.M.; Rush, D.; Ettwig, K.; Sinninghe Damsté, J.S. (2014). Rare bacteriohopanepolyols as markers for an autotrophic, intra-aerobic methanotroph. Geochim. Cosmochim. Acta 136: 114-125.
    Kulichevskaya, I.S.; Suzina, N.E.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Dedysh, S.N. (2014). Paludibaculum fermentans gen. nov., sp. nov., a facultative anaerobe capable of dissimilatory iron reduction from subdivision 3 Acidobacteria. Int. J. Syst. Evol. Microbiol. 64: 2857-2864.
    Kunihiro, T.; Veuger, B.; Vasquez Cardenas, D.; Pozzato, L.; Le Guitton, M.; Moriya, K.; Kuwae, M.; Omori, K.; Boschker, H.T.S.; Van Oevelen, D. (2014). Phospholipid-Derived Fatty Acids and Quinones as Markers for Bacterial Biomass and Community Structure in Marine Sediments. PLoS One 9(4): e96219.
    Lengger, S.K.; Hopmans, E.C.; Sinninghe Damsté, J.S.; Schouten, S. (2014). Impact of sedimentary degradation and deep water column production on GDGT abundance and distribution in surface sediments in the Arabian Sea: Implicationsfor the TEX86 paleothermometer. Geochim. Cosmochim. Acta 142: 386-399.
    Lengger, S.K.; Hopmans, E.C.; Sinninghe Damsté, J.S.; Schouten, S. (2014). Fossilization and degradation of archaeal intact polar tetraether lipids in deeply buried marine sediments (Peru Margin). Geobiol. 12(3): 212-220.
    Lengger, S.K.; Lipsewers, Y.A.; de Haas, H.; Sinninghe Damsté, J.S.; Schouten, S. (2014). Lack of 13C-label incorporation suggests low turnover rates of thaumarchaeal intact polar tetraether lipids in sediments from the Iceland shelf. Biogeosciences 11(2): 201-216.
    Lipsewers, Y.A.; Bale, N.J.; Hopmans, E.C.; Schouten, S.; Sinninghe Damsté, J.S.; Villanueva, L. (2014). Seasonality and depth distribution of the abundance and activity of ammonia oxidizing microorganisms in marine coastal sediments (North Sea). Front. Microbiol. 5: 471 1-12.
    Loomis, S.E.; Russell, J.M.; Eggermont, H.; Verschuren, D.; Sinninghe Damsté, J.S. (2014). Effects of temperature, pH and nutrient concentration on branched GDGT distributions in East African lakes: Implications for paleoenvironmental reconstruction. Org. Geochem. 66: 25-37.
    Loomis, S.E.; Russell, J.M.; Heureux, A.M.; D'Andrea, W.J.; Sinninghe Damsté, J.S. (2014). Seasonal variability of branched glycerol dialkyl glycerol tetraethers (brGDGTs) in a temperate lake system. Geochim. Cosmochim. Acta 144: 173–187.
    López-Rodríguez, C.; Stadnitskaia, A.; De Lange, G.J.; Martínez-Ruíz, F; Comas, M.; Sinninghe Damsté, J.S. (2014). Origin of lipid biomarkers in mud volcanoes from the Alboran Sea, western Mediterranean. Biogeosciences 11: 3187-3204.
    Louterbach, M.; Roddaz, M.; Bailleul, J.; Antoine, P.O.; Adnet, S.; Kim, J.H.; van Soelen, E.E.; Parra, F.; Gérard, J.; Calderon, Y.; Gagnaison, C.; Sinninghe Damsté, J.S.; Baby, P. (2014). Evidences for a Paleocene marine incursion in southern Amazonia (Madre de Dios Sub-Andean Zone, Peru). Palaeogeogr. Palaeoclimatol. Palaeoecol. 414: 451–471.
    M'boule, D.; Chivall, D.; Sinke-Schoen, D.; Sinninghe Damsté, J.S.; Schouten, S.; van der Meer, M.T.J. (2014). Salinity dependent hydrogen isotope fractionation in alkenones produced by coastal and open ocean haptophyte algae. Geochim. Cosmochim. Acta 130: 126-135.
    Maat, D.S.; Bale, N.J.; Hopmans, E.C.; Baudoux, A.C.; Sinninghe Damsté, J.S.; Schouten, S.; Brussaard, C.P.D. (2014). Acquisition of intact polar lipids from the prymnesiophyte Phaeocystis globosa by its lytic virus PgV-07T. Biogeosciences 11(1): 185-194.
    Maat, D.S.; Crawfurd, K.J.; Timmermans, K.R.; Brussaard, C.P.D. (2014). Elevated CO2 and Phosphate Limitation Favor Micromonas pusilla through Stimulated Growth and Reduced Viral Impact. Appl. Environ. Microbiol. 80(10): 3119-3127.
    Malkin, S.Y.; Rao, A.M.F.; Seitaj, D.; Vasquez-Cardenas, D.; Zetsche, E.-M.; Hidalgo-Martinez, S.; Boschker, H.T.S.; Meysman, F.J.R. (2014). Natural occurrence of microbial sulphur oxidation by long-range electron transport in the seafloor. ISME J. 8(9): 1843–1854.
    Mao, J.; Nierop, K.G.J.; Sinninghe Damsté, J.S.; Dekker, S.C. (2014). Roots induce stronger soil water repellency than leaf waxes. Geoderma 232-234: 328-340.
    Miyatake, T.; Moerdijk-Poortvliet, T.C.W.; Stal, L.J.; Boschker, H.T.S. (2014). Tracing carbon flow from microphytobenthos to major bacterial groups in an intertidal marine sediment by using an in situ 13C pulse-chase method. Limnol. Oceanogr. 59(4): 1275-1287.
    Moerdijk-Poortvliet, T.C.W.; Brasser, J.; de Ruiter, G.; Houtekamer, M.; Bolhuis, H.; Stal, L.J.; Boschker, H.T.S. (2014). A versatile method for simultaneous stable carbon isotope analysis of DNA and RNA nucleotides by liquid chromatography/isotope ratio mass spectrometry. Rapid Comm. Mass Spectrom. 28(12): 1401-1411.
    Moerdijk-Poortvliet, T.C.W.; Stal, L.J.; Boschker, H.T.S. (2014). LC/IRMS analysis: A powerful technique to trace carbon flow in microphytobenthic communities in intertidal sediments. J. Sea Res. 92: 19–25.
    Mojica, K.D.A.; Brussaard, C.P.D. (2014). Factors affecting virus dynamics and microbial host-virus interactions in marine environments. FEMS Microbiol. Ecol. 89(3): 495–515.
    Mojica, K.D.A.; Evans, C.; Brussaard, C.P.D. (2014). Flow cytometric enumeration of marine viral populations at low abundances. Aquat. Microb. Ecol. 71(3): 203–209.
    Moreira, I.S.; Moreira-Turcq, P.; Kim, J.H.; Turcq, B.; Cordeiro, R.C.; Caquineau, S.; Mandengo-Yogo, M.; Sinninghe Damsté, J.S. (2014). A mineralogical and organic geochemical overview of the effects of Holocene changes in Amazon River flow on three floodplain lakes. Palaeogeogr. Palaeoclimatol. Palaeoecol. 415: 152–164.
    Muck, S.; Griessler, T.; Köstner, N.; Klimiuk, A.; Winter, C.; Herndl, G.J. (2014). Fracture zones in the Mid Atlantic Ridge lead to alterations in prokaryotic and viral parameters in deep-water masses. Front. Microbiol. 5: 264. 10.3389/fmicb.2014.00264
    Mueller, B.; de Goeij, J.M.; Vermeij, M.J.A.; Mulders, Y.; van der Ent, E.; Ribes, M.; van Duyl, F.C. (2014). Natural Diet of Coral-Excavating Sponges Consists Mainly of Dissolved Organic Carbon (DOC). PLoS One 9(2): e90152.
    Mueller, B.; van der Zande, R.M.; van Leent, P.J.M.; Meesters, E.H.; Vermeij, M.J.A.; van Duyl, F.C. (2014). Effect of light availability on dissolved organic carbon release by Caribbean reef algae and corals. Bull. Mar. Sci. 90(3): 875-893.
    Mumby, P.J.; Flower, J.; Chollett, I.; Box, S.; Bozec, Y.; Fitzsimmons, C.; Forster, J.; Gill, D.; Griffith-Mumby, R.; Oxenford, H.A.; Peterson, A.; Stead, S. M.; Turner, R.; Townsley, P.; van Beukering, P.; Booker, F.; Brocke, H.; Cabañillas-Terán, N.; Canty, S.; Carricart-Ganivet, J.P.; Charlery, J.; Dryden, C.; van Duyl, F.C.; Enríquez, S.; den Haan, J.; Iglesias-Prieto, R.; Kennedy, E.; Mahon, R.; Mueller, B.; Newman, S.J.; Nugues, M.; Cortés Núñez, J.; Nurse, L.; Osinga, R.; Paris, C.; Petersen, D.; Polunin, N. V. C.; Sánchez, C.; Schep, S.; Stevens, J.; Vallès, H.; Vermeij, M.J.A.; Visser, P.M.; Whittingham, E.; Williams, S. (2014). Towards Reef Resilience and Sustainable Livelihoods. A Handbook for Caribbean Coral Reef Managers. University of Exeter: Exeter, Devon, UK. ISBN 978-0-902746-31-2. 176 pp.
    Mutterlose, J.; Bottini, C.; Schouten, S.; Sinninghe Damsté, J.S. (2014). High sea-surface temperatures during the early Aptian Oceanic Anoxic Event 1a in the Boreal Realm. Geology (Boulder Colo.) 42(5): 439-442.
    Neumann, S.; Wessels, H.J.C.T.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Kartal, B.; Jetten, M.S.M.; van Niftrik, L. (2014). Isolation and characterization of a prokaryotic cell organelle from the anammox bacterium Kuenenia stuttgartiensis. Mol. Microbiol. 94(4): 794-802.
    Pascal, P.-Y.; Dubois, S.; Boschker, H.T.S.; Gros, O. (2014). Trophic role of large benthic sulfur bacteria in mangrove sediment . Mar. Ecol. Prog. Ser. 516: 127-138 .
    Pavlov, A.K.; Silyakova, A.; Granskog, M.A.; Bellerby, R.G.J.; Engel, A.; Schulz, K.G.; Brussaard, C.P.D. (2014). Marine CDOM accumulation during a coastal Arctic mesocosm experiment: No response to elevated pCO2 levels. J. Geophys. Res. Biogeosciences, 119(6): 1216–1230.
    Philippart, C.J.M.; van Bleijswijk, J.; Kromkamp, J.C.; Zuur, A.F.; Herman, P.M.J. (2014). Reproductive phenology of coastal marine bivalves in a seasonal environment. J. Plankton Res. 36(6): 1512-1527.
    Piquet, A.M.-T.; van de Poll, W.H.; Visser, R.J.W.; Wiencke, C.; Bolhuis, H.; Buma, A.G.J. (2014). Springtime phytoplankton dynamics in Arctic Krossfjorden and Kongsfjorden (Spitsbergen) as a function of glacier proximity. Biogeosciences 11(8): 2263-2279.
    Prenafeta Boldú, F.X.; Summerbell, R.C.; de Boer, W.; Boschker, H.T.S.; Gamsformerly, W. (2014). Biodiversity and ecology of soil fungi in a primary succession of a temperate coastal dune system. Nova Hedwigia 99(3-4): 347-372.
    Rampen, S.; Datema, M.; Rodrigo-Gámiz, M.; Schouten, S.; Reichart, G.-J.; Sinninghe Damsté, J.S. (2014). Sources and proxy potential of long chain alkyl diols in lacustrine environments. Geochim. Cosmochim. Acta 144: 59–71.
    Rampen, S.W.; Willmott, V.; Kim, J.H.; Rodrigo-Gamiz, M.; Uliana, E.; Mollenhauer, G.; Schefuß, E.; Sinninghe Damsté, J.S.; Schouten, S. (2014). Evaluation of long chain 1,14-alkyl diols in marine sediments as indicators for upwelling and temperature. Org. Geochem. 76: 39–47.
    Rasigraf, O.; Kool, D.M.; Jetten, M.S.M.; Ettwig, K.F.; Sinninghe Damsté, J.S. (2014). Autotrophic Carbon Dioxide Fixation via the Calvin-Benson-Bassham Cycle by the Denitrifying Methanotroph "Candidatus Methylomirabilis oxyfera". Appl. Environ. Microbiol. 80(8): 2451-2460.
    Reul, A.; Muñoz, M.; Bautista, A.; Neale, P.J.; Sobrino, C.; Mercado, J.M.; Segovia, M.; Salles, S.; Kulk, G.; Léon, P.; van de Poll, W.H.; Pérez, E.; Buma, A.; Blanco, J.M. (2014). Effect of CO2, nutrients and light on coastal plankton. III. Trophic cascade, size structure and composition. Aquat. Biol. 22: 59-76.
    Rodrigo-Gámiz, M.; Martínez-Ruiz, F.; Rampen, S.W.; Schouten, S.; Sinninghe Damsté, J.S. (2014). Sea surface temperature variations in the western Mediterranean Sea over the last 20 kyr: A dual-organic proxy (UK'37 and LDI) approach. Paleoceanography 29(2): 87-98.
    Rush, D.; Jaeschke, A.; Geenevasen, J.A.J.; Tegelaar, E.; Pureveen, J.; Lewan, M.D.; Schouten, S.; Sinninghe Damsté, J.S. (2014). Generation of unusual branched long chain alkanes from hydrous pyrolysis of anammox bacterial biomass. Org. Geochem. 76: 136–145.
    Rush, D.; Sinninghe Damsté, J.S.; Poulton, S.W.; Thamdrup, B.; Leigh Garside, A.; Acuña-Gonzalez, J.; Schouten, S.; Jetten, M.S.M.; Talbot, H.M. (2014). Anaerobic ammonium-oxidising bacteria: A biological source of the bacteriohopanetetrol stereoisomer in marine sediments. Geochim. Cosmochim. Acta 140: 50-63.
    Schouten, S.; Villanueva, L.; Hopmans, E.C.; van der Meer, M.T.J.; Sinninghe Damsté, J.S. (2014). Are Marine Group II Euryarchaeota significant contributors to tetraether lipids in the ocean? Proc. Natl. Acad. Sci. U.S.A. 111(41): e4285.
    Seki, O.; Mikami, Y.; Nagao, S.; Bendle, J.A.; Nakatsuka, T.; Kim, V.I. ; Shesterkin, V.P.; Makinov, A.N.; Fukushima, M.; Moossen, H.M.; Schouten, S. (2014). Lignin phenols and BIT index distributions in the Amur River and the Sea of Okhotsk: Implications for the source and transport of particulate terrestrial organic matter to the ocean. Prog. Oceanogr. 126: 146-154.
    Sheik, A.R.; Brussaard, C.P.D.; Lavik, G.; Lam, P.; Musat, N.; Krupke, A.; Littmann, S.; Strous, M.; Kuypers, M.M.M. (2014). Responses of the coastal bacterial community to viral infection of the algae Phaeocystis globosa. ISME J. 8(1): 212-225.
    Sinninghe Damsté, J.S.; Rijpstra, W.I.C.; Hopmans, E.C.; Foesel, B.U.; Wüst, P.K.; Overmann, J.; Tank, M.; Bryant, D.A.; Dunfield, P.F.; Houghton, K.; Stott, M. (2014). Ether- and Ester-Bound iso-Diabolic Acid and Other Lipids in Members of Acidobacteria Subdivision 4. Appl. Environ. Microbiol. 80(17): 5207-5218.
    Sinninghe Damsté, J.S.; Schouten, S.; Volkman, J.K. (2014). C27-C30 neohop-13(18)-enes and their saturated and aromatic derivatives in sediments: Indicators for diagenesis and water column stratification. Geochim. Cosmochim. Acta 133: 402-421.
    Sliwinska, K.K.; Dybkjær, K.; Schoon, P.L.; Beyer, C.; King, C.; Schouten, S.; Nielsen, O.B. (2014). Paleoclimatic and paleoenvironmental records of the Oligocene-Miocene transition, central Jylland, Denmark. Mar. Geol. 350: 1-15.
    Sluijs, A.; van Roij, L.; Harrington, G.J.; Schouten, S.; Sessa, J.A.; LeVay, L.J.; Reichart, G.-J.; Slomp, C.P. (2014). Warming, euxinia and sea level rise during the Paleocene–Eocene Thermal Maximum on the Gulf Coastal Plain: implications for ocean oxygenation and nutrient cycling. Clim. Past 10: 1421-1439.
    Sorokin, D.Y.; Gumerov, V.M.; Rakitin, A.L.; Beletsky, A.V.; Sinninghe Damsté, J.S.; Muyzer, G.; Mardanov, A.V.; Ravin, N.V. (2014). Genome analysis of Chitinivibrio alkaliphilus gen. nov., sp. nov., a novel extremely haloalkaliphilic anaerobic chitinolytic bacterium from the candidate phylum Termite Group 3. Environ. Microbiol. 16(6): 1549–1565.
    Sorokin, D.Y.; Vejmelkova, D.; Lücker, S.; Streshinskaya, G.M.; Rijpstra, W.I.C.; Sinninghe Damsté, J.; Kleerbezem, R.; van Loosdrecht, M.C.M.; Muyzer, G.; Daims, H. (2014). Nitrolancea hollandica gen. nov., sp. nov., a chemolithoautotrophic nitrite-oxidizing bacterium isolated from a bioreactor belonging to the phylum Chloroflexi. Int. J. Syst. Evol. Microbiol. 64(6): 1859-1865.
    Steenhauer, L.M.; Pollard, P.C.; Brussaard, C.P.D.; Säwström, C. (2014). Lysogenic infection in sub-tropical freshwater cyanobacteria cultures and natural blooms. Mar. Freshw. Res. 65(7): 624-632.
    Svensson, E.; Freitas, V.; Schouten, S.; Middelburg, J.J.; van der Veer, H.W.; Sinninghe Damsté, J.S. (2014). Comparison of the stable carbon and nitrogen isotopic values of gill and white muscle tissue of fish. J. Exp. Mar. Biol. Ecol. 457: 173-179.
    Thomas, E.K.; Clemens, S.C.; Prell, W.L.; Herbert, T.D.; Huang, Y.S.; Liu, Z.; Sinninghe Damsté, J.S.; Sun, Y.; Wen, X. (2014). Temperature and leaf wax d2H records demonstrate seasonal and regional controls on Asian monsoon proxies. Geology (Boulder Colo.) 42(12): 1075-1078.
    van Bleijswijk, J.; Begeman, L.; Witte, H.J.; IJsseldijk, L.L.; Brasseur, S.M.J.M.; Gröne, A.; Leopold, M.F. (2014). Detection of grey seal Halichoerus grypus DNA in attack wounds on stranded harbour porpoises Phocoena phocoena. Mar. Ecol. Prog. Ser. 513: 277-281.
    van Bree, L.G.J.; Rijpstra, W.I.C.; Cocquyt, C.; Al-Dhabi, N.-A.; Verschuren, D.; Sinninghe Damsté, J.S.; de Leeuw, J.W. (2014). Origin and palaeoenvironmental significance of C25 and C27n-alk-1-enes in a 25,000-year lake-sedimentary record from equatorial East Africa. Geochim. Cosmochim. Acta 145: 89–102.
    van Gelder, A.H.; Sousa, D.Z.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Stams, A.J.M.; Sánchez-Andrea, I. (2014). Ercella succinigenes gen. nov., sp. nov., ananaerobic succinate-producing bacterium. Int. J. Syst. Evol. Microbiol. 64(7): 2449-2454.
    van Helmond, N.A.G.M.; Sluijs, A.; Reichart, G.J; Sinninghe Damsté, J.S.; Slomp, C.P.; Brinkhuis, H. (2014). A perturbed hydrological cycle during Oceanic Anoxic Event 2. Geology (Boulder Colo.) 42(2): 123-126.
    van Soelen, E.E.; Lammers, J.M.; Eglinton, T.I.; Sinninghe Damsté, J.S.; Reichart, G.-J. (2014). Unusual C35 to C38 alkenones in mid-Holocene sediments from a restricted estuary (Charlotte Harbor, Florida). Org. Geochem. 70: 20-28.
    Vellekoop, J.; Sluijs, A.; Smit, J.; Schouten, S.; Weijers, J.W.H.; Sinninghe Damsté, J.S.; Brinkhuis, H. (2014). Rapid short-term cooling following the Chicxulub impact at the Cretaceous-Paleogene boundary. Proc. Natl. Acad. Sci. U.S.A. 111(21): 7537-7541.
    Villanueva, L.; Besseling, M.; Rodrigo-Gamiz, M.; Rampen, S.; Verschuren, D.; Sinninghe Damsté, J.S. (2014). Potential biological sources of long chain alkyl diols in a lacustrine system. Org. Geochem. 68: 27-30.
    Villanueva, L.; Hopmans, E.C.; Bale, N.; Schouten, S.; Sinninghe Damsté, J.S. (2014). Diversity and distribution of a key sulpholipid biosynthetic gene in marine microbial assemblages. Environ. Microbiol. 16(3): 774-787.
    Villanueva, L.; Rijpstra, W.I.C.; Schouten, S.; Sinninghe Damsté, J.S. (2014). Genetic biomarkers of the sterol-biosynthetic pathway in microalgae. Environmental Microbiology Reports 6(1): 35-44.
    Villanueva, L.; Sinninghe Damsté, J.S.; Schouten, S. (2014). A re-evaluation of the archaeal membrane lipid biosynthetic pathway. Nat. Rev., Microbiol. 12(6): 438-448.
    Villanueva, L.; Speth, D.R.; van Alen, T.; Hoischen, A.; Jetten, M.S.M. (2014). Shotgun metagenomic data reveals significant abundance but low diversity of "Candidatus Scalindua" marine anammox bacteria in the Arabian Sea oxygen minimum zone. Front. Microbiol. 5: 31, 1-9.
    Weijers, J.W.H.; Schefuß, E.; Kim, J.-H.; Sinninghe Damsté, J.; Schouten, S. (2014). Constraints on the sources of branched tetraether membrane lipids in distal marine sediments. Org. Geochem. 72: 14-22.
    Welsh, J.E.; van der Meer, J.; Brussaard, C.P.D.; Thieltges, D.W. (2014). Inventory of organisms interfering with transmission of a marine trematode. J. Mar. Biol. Ass. U.K. 94(4): 697–702.
    Wijgerde, T.; van Melis, A.; Silva, C.I.F.; Leal, M.C.; Vogels, L.; Mutter, C.; Osinga, R. (2014). Red Light Represses the Photophysiology of the Scleractinian Coral Stylophora pistillata. PLoS One 9(3): e92781.
    Winter, C.; Garcia, J.A.L.; Weinbauer, M.G.; DuBow, M.S.; Herndl, G.J. (2014). Comparison of Deep-Water Viromes from the Atlantic Ocean and the Mediterranean Sea. PLoS One 9(6): e100600 1-8.
    Zell, C. (2014). Origin and fate of branched tetraether lipids in river drainage systems : Implications for the use of the MBT/CBT proxy as a continental palaeothermometer in marine sedimentary records. PhD Thesis. [S.n.]: [s.l.]. 201 pp.
    Zell, C.; Kim, J.H.; Balsinha, M.; Dorhout, D.; Fernandes, C.; Baas, M.; Sinninghe Damsté, J.S. (2014). Transport of branched tetraether lipids from the Tagus River basin to the coastal ocean of the Portuguese margin: consequences for the interpretation of the MBT’/CBT paleothermometer. Biogeosciences 11: 5637-5655.
    Zell, C.; Kim, J.H.; Hollander, D.; Lorenzoni, L.; Baker, P.; Guizan Silva, G.S.; Sinninghe Damsté, J.S. (2014). Sources and distributions of branched and isoprenoid tetraether lipids on the Amazon shelf and fan: Implications for the use of GDGT-based proxies in marine sediments. Geochim. Cosmochim. Acta 139: 293–312.
    Zhang, Y.; Maignien, L.; Stadnitskaia, A.; Boeckx, P.; Xiao, X.; Boon, N. (2014). Stratified community responses to methane and sulfate supplies in mud volcano deposits: insights from an in vitro experiment. PLoS One 9(11): e113004.
    Zhang, Y.; Zhao, Z.; Dai, M.; Jiao, N.; Herndl, G.J. (2014). Drivers shaping the diversity and biogeography of total and active bacterial communities in the South China Sea. Mol. Ecol. 23(9): 2260-2274.
  • 2013
    Assmy, P.; Smetacek, V.; Klaas, C.; Henjes, J.; Strass, V.H.; Arrieta, J.M.; Bathmann, U.; Cisewski, B.; Fuchs, N.; Herndl, G.J. (2013). Thick-shelled, grazer-protected diatoms decouple ocean carbon and silicon cycles in the iron-limited Antarctic Circumpolar Current. Proc. Natl. Acad. Sci. U.S.A. 110(51): 20633–20638.
    Bale, N.J.; Hopmans, E.C.; Schouten, S.; Sinninghe Damsté, J.S. (2013). Different seasonality of pelagic and benthic Thaumarchaeota in the North Sea. Biogeosciences 10: 7195–7206.
    Baltar, F.; Arístegui, J.; Gasol, J.M.; Yokokawa, T.; Herndl, G.J. (2013). Bacterial Versus Archaeal Origin of Extracellular Enzymatic Activity in the Northeast Atlantic Deep Waters. Microb. Ecol. 65(2): 277-288.
    Baltar, F.; Reinthaler, T.; Herndl, G.J.; Pinhassi, J. (2013). Major Effect of Hydrogen Peroxide on Bacterioplankton Metabolism in the Northeast Atlantic. PLoS One 8(4).
    Bauersachs, T.; Miller, S.R.; van der Meer, M.T.J.; Hopmans, E.C.; Schouten, S.; Sinninghe Damsté, J.S. (2013). Distribution of long chain heterocyst glycolipids in cultures of the thermophilic cyanobacterium Mastigocladus laminosus and a hot spring microbial mat. Org. Geochem. 56: 19-24.
    Benavides, M.; Agawin, N.S.R.; Aristegui, J.; Peene, J.; Stal, L.J. (2013). Dissolved organic nitrogen and carbon release by a marine unicellular diazotrophic cyanobacterium. Aquat. Microb. Ecol. 69(1): 69-80.
    Bergauer, K.; Sintes, E.; van Bleijswijk, J.; Witte, H.; Herndl, G.J. (2013). Abundance and distribution of archaeal acetyl-CoA/propionyl-CoA carboxylase genes indicative for putatively chemoautotrophic Archaea in the tropical Atlantic's interior. FEMS Microbiol. Ecol. 84(3): 461-473.
    Bijl, P.K.; Bendle, J.A.P.; Bohaty, S.M.; Pross, J.; Schouten, S.; Tauxe, L.; Stickley, C.E.; McKay, R.M.; Röhl, U.; Olney, M.; Sluijs, A.; Escutia, C.; Brinkhuis, H.; Expedition 318 Scientists (2013). Eocene cooling linked to early flow across the Tasmanian Gateway. Proc. Natl. Acad. Sci. U.S.A. 110(24): 9645-9650.
    Blaga, C.I.; Reichart, G.J.; Lotter, A.F.; Anselmetti, F.S.; Sinninghe Damsté, J.S.; Anselmetti, F.S.; Sinninghe Damsté, J.S. (2013). A TEX86 lake record suggests simultaneous shifts in temperature in Central Europe and Greenland during the last deglaciation. Geophys. Res. Lett. 40(5): 948-953.
    Blanchet, C.; Tjallingii, R.; Frank, M.; Lorenzen, J.; Reitz, A.; Brown, K.; Feseker, T.; Brückmann, W. (2013). High- and low-latitude forcing of the Nile River regime during the Holocene inferred from laminated sediments of the Nile deep-sea fan. Earth Planet. Sci. Lett. 364: 98-110.
    Blyth, A.J.; Schouten, S. (2013). Calibrating the glycerol dialkyl glycerol tetraether temperature signalin speleothems. Geochim. Cosmochim. Acta 109: 312-328.
    Boekema, E.J.; Scheffers, D.-J.; van Bezouwen, L.S.; Bolhuis, H.; Folea, I.M. (2013). Focus on Membrane Differentiation and Membrane Domains in the Prokaryotic Cell. J. Mol. Microbiol. Biotechnol. 23(4-5): 345-356.
    Boelen, P.; van Dijk, R.; Sinninghe Damsté, J.S.; Rijpstra, W.I.C.; Buma, A.G.J. (2013). On the potential application of polar and temperate marine microalgae for EPA and DHA production. AMB Express 3(26): 1-9.
    Bolhuis, H.; Fillinger, L.; Stal, L.J. (2013). Coastal Microbial Mat Diversity along a Natural Salinity Gradient. PLoS One 8(5).
    Bongaerts, P.; Frade, P.R.; Ogier, J.J.; Hay, K.B.; van Bleijswijk, J.; Englebert, N.; Vermeij, M.J.A.; Bak, R.P.M.; Visser, P.M.; Hoegh-Guldberg, O. (2013). Sharing the slope: depth partitioning of agariciid corals and associated Symbiodinium across shallow and mesophotic habitats (2-60 m) on a Caribbean reef. BMC Evol. Biol. 13: 1-14.
    Borin, S.; Mapelli, F.; Rolli, E.; Song, B.; Tobias, G.; Schmid, M.C.; De Lange, G.J.; Reichart, G.J.; Jetten, M.; Daffonchio, D.; Schmid, M.C.; Schouten, S. (2013). Anammox bacterial populations in deep marine hypersaline gradiënt systems. Extremophiles 17(2): 289-299.
    Bos, A.R.; Gumanao, G.S.; Mueller, B.; Saceda-Cardoza, M.M.E. (2013). Management of crown-of-thorns sea star (Acanthaster planci L.)outbreaks: Removal success depends on reef topography and timing within the reproduction cycle. Ocean Coast. Manag. 71: 116-122.
    Brandsma, J.; Martínez Martínez, J.; Slagter, H.A.; Evans, C.; Brussaard, C.P.D. (2013). Microbial biogeography of the North Sea during summer. Biogeochemistry 113(1-3): 119-136.
    Brauer, V.S.; Stomp, M.; Rosso, C.; van Beusekom, S.A.M.; Emmerich, B.; Stal, L.; Huisman, J. (2013). Low temperature delays timing and enhances the cost of nitrogen fixation in the unicellular cyanobacterium Cyanothece. ISME J. 7: 2105-2115.
    Brussaard, C.P.D.; Noordeloos, A.A.M.; Witte, H.; Collenteur, M.C.J; Schulz, K.G.; Ludwig, A.; Riebesell, U. (2013). Arctic microbial community dynamics influenced by elevated CO2 levels. Biogeosciences 10(2): 719-731.
    Buckles, L.K.; Villanueva, L.; Weijers, J.W.H.; Verschuren, D.; Sinninghe Damsté, J.S. (2013). Linking isoprenoidal GDGT membrane lipid distributions with gene abundances of ammonia-oxidizing Thaumarchaeota and uncultured crenarchaeotal groups in the water column of a tropical lake (Lake Challa, East Africa). Environ. Microbiol. 15(9): 2445-2462.
    Calleja, M.L.; Duarte, C.M.; Álvarez, M.; Vaquer-Sunyer, R.; Agustí, S.; Herndl, G.J. (2013). Prevalence of strong vertical CO2 and O2 variability in the top meters of the ocean. Global Biogeochem. Cycles 27: 941–949.
    Cardoso, J.F.M.F.; van Bleijswijk, J.D.L.; Witte, H.; van Duyl, F.C. (2013). Diversity and abundance of ammonia-oxidizing Archaea and Bacteria in tropical and cold-water coral reef sponges. Aquat. Microb. Ecol. 68(3): 215-230.
    Carreira, C.; Larsen, M.; Glud, R.N.; Brussaard, C.P.D.; Middelboe, M. (2013). Heterogeneous distribution of prokaryotes and viruses at the microscale in a tidal sediment. Aquat. Microb. Ecol. 69(3): 183-192.
    De Corte, D.; Sintes, E.; Yokokawa, T.; Herndl, G.; De Corte, D. (2013). Comparison between MICRO-CARD-FISH and 16S rRNA gene clone libraries toassess the active versus total bacterial community in the coastal Arctic. Environmental Microbiology Reports 5(2): 272-281.
    De Jonge, C.; Hopmans, E.C.; Stadnitskaia, A.; Rijpstra, W.I.C.; Hofland, R.; Tegelaar, E.; Sinninghe Damsté, J.S. (2013). Identification of novel penta- and hexamethylated branched glycerol dialkyl glycerol tetraethers in peat using HPLC-MS2, GC-MS and GC-SMB-MS. Org. Geochem. 54: 78-82.
    den Haan, J.; Huisman, J.; Dekker, F.; ten Brinke, J.L.; Ford, A.K.; van Ooijen, J.; van Duyl, F.C.; Vermeij, M.J.A.; Visser, P.M. (2013). Fast Detection of Nutrient Limitation in Macroalgae and Seagrass with Nutrient-Induced Fluorescence. PLoS One 8(7).
    Drigo, B.; Kowalchuk, G.A.; Knapp, B.A.; Pijl, A.S.; Boschker, H.T.S.; van Veen, J.A. (2013). Impacts of 3 years of elevated atmospheric CO2 on rhizosphere carbon flow and microbial community dynamics. Glob. Chang. Biol. 19(2): 621-636.
    Etourneau, J.; Collins, L.G.; Willmott, V.; Barbara, L.; Leventer, A.; Schouten, S.; Sinninghe Damsté, J.S.; Bianchini, A.; Klein, V.; Crosta, X.; Massé, G. (2013). Holocene climate variations in the western Antarctic Peninsula: evidence for sea ice extent predominantly controlled by changes in insolation and ENSO variability. Clim. Past 9(4): 1431-1446.
    Ferrer, C.; Fodran, P.; Barroso, S.; Gibson, R.; Hopmans, E.C.; Sinninghe Damsté, J.S.; Schouten, S.; Minnaard, A.J. (2013). Asymmetric synthesis of cyclo-archaeol and ß-glucosyl cyclo-archaeol. Org. Biomol. Chem. 11(15): 2482-2492.
    Frieling, J.; Gebhardt, H.; Huber, M.; Adekeye, O.A.; Akande, S.O.; Reichart, G.-J.; Middelburg, J.J.; Schouten, S.; Sluijs, A. (2017). Extreme warmth and heat-stressed plankton in the tropics during the Paleocene-EoceneThermal Maximum. Science Advances, 3. NIOZ: [s.l.]. e1600891 pp.
    Gaudin, M.; Gauliard, E.; Schouten, S.; Houel-Renault, L.; Lenormand, P.; Marguet, E.; Forterre, P. (2013). Hyperthermophilic archaea produce membrane vesicles that can transfer DNA. Environmental Microbiology Reports 5(1): 109-116.
    Gibson, R.A.; van der Meer, M.T.J.; Hopmans, E.C.; Reysenbach, A.-L.; Schouten, S.; Sinninghe Damsté, J.S. (2013). Comparison of intact polar lipid with microbial community composition of vent deposits of the Rainbow and Lucky Strike hydrothermal fields. Geobiol. 11(1): 72-85.
    Haaijer, S.C.M.; Ji, K.; van Niftrik, L.; Hoischen, A.; Speth, D.R.; Jetten, M.S.M.; Sinninghe Damsté, J.S.; Op den Camp, H.J.M. (2013). A novel marine nitrite-oxidizing Nitrospira species from Dutch coastal North Sea water. Front. Microbiol. 4(60).
    Hamilton-Brehm, S.D.; Gibson, R.A.; Green, S.J.; Hopmans, E.C.; Schouten, S.; van der Meer, M.T.J.; Shields, J.P.; Sinninghe Damsté, J.S.; Elkins, J.G. (2013). Thermodesulfobacterium geofontis sp nov., a hyperthermophilic, sulfate-reducing bacterium isolated from Obsidian Pool, Yellowstone National Park. Extremophiles 17(2): 251-263.
    Herndl, G.J.; Reinthaler, T. (2013). Microbial control of the dark end of the biological pump. Nature Geoscience 6(9): 718-724.
    Hopkins, F.E.; Kimmance, S.A.; Stephens, J.A.; Bellerby, R.G.J.; Brussaard, C.P.D.; Czerny, J.; Schulz, K.G.; Archer, S.D. (2013). Response of halocarbons to ocean acidification in the Arctic. Biogeosciences 10(4): 2331-2345.
    Hopmans, E.C.; dos Santos, R.A.L.; Mets, A.; Sinninghe Damsté, J.S.; Schouten, S. (2013). A novel method for the rapid analysis of levoglucosan in soils and sediments. Org. Geochem. 58: 86-88.
    Kaserzon, S.L.; Vermeirssen, E.L.M.; Hawker, D.W.; Kennedy, K.; Bentley, C.; Thompson, J.; Booij, K.; Mueller, J.F. (2013). Passive sampling of perfluorinated chemicals in water: Flow rate effects on chemical uptake. Environ. Pollut. 177: 58-63.
    Kim, J.J.; Alkawally, M.; Brady, A.L.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Dunfield, P.F. (2013). Chryseolinea serpens gen. nov., sp. nov., a member of the phylum Bacteroidetes isolated from soil. Int. J. Syst. Evol. Microbiol. 63: 654-660.
    Kulk, G.; van de Poll, W.H.; Visser, R.J.W.; Buma, A.G.J. (2013). Low nutrient availability reduces high-irradiance–induced viability loss inoceanic phytoplankton. Limnol. Oceanogr. 58(5): 1747–1760.
    Labrenz, M.; Grote, J.; Mammitzsch, K.; Boschker, H.T.S.; Laue, M.; Jost, G.; Glaubitz, S.; Jürgens, K. (2013). Sulfurimonas gotlandica sp. nov., a chemoautotrophic and psychrotolerantepsilonproteobacterium isolated from a pelagicredoxcline, and an emended description of the genus Sulfurimonas. Int. J. Syst. Evol. Microbiol. 63: 4141–4148.
    Lammers, J.M.; van Soelen, E.E.; Donders, T.H.; Wagner-Cremer, F.; Sinninghe Damsté, J.S.; Reichart, G.J (2013). Natural Environmental Changes versus Human Impact in a Florida Estuary (Rookery Bay, USA). Est. Coast. 36(1): 149-157.
    Lekunberri, I.; Sintes, E.; de Corte, D.; Yokokawa, T.; Herndl, G.J. (2013). Spatial patterns of bacterial and archaeal communities along the Romanche Fracture Zone (tropical Atlantic). FEMS Microbiol. Ecol. 85(3): 537-552.
    Lengger, S.K. (2013). Production and preservation of archaeal glycerol dibiphytanyl glycerol tetraethersas intact polar lipids in marine sediments: Implications for their use in microbial ecology and TEX86 paleothermometry. PhD Thesis. Universiteit Utrecht: [s.l.]. ISBN 978-94-6203-385-6. 1-228 pp.
    Lengger, S.K.; Kraaij, M.; Tjallingii, R.; Baas, M.; Stuut, J.-B.; Hopmans, E.C.; Sinninghe Damsté, J.S.; Schouten, S. (2013). Differential degradation of intact polar and core glycerol dialkyl glycerol tetraether lipids upon post-depositional oxidation. Org. Geochem. 65: 83-93.
    Lohmann, G.; Pfeiffer, M.; Laepple, T.; Leduc, G.; Kim, J.-H. (2013). A model-data comparison of the Holocene global sea surface temperature evolution. Clim. Past 9(4): 1807-1839.
    Lopes dos Santos, R.A.; De Deckker, P.; Hopmans, E.C.; Magee, J.W.; Mets, A.; Sinninghe Damsté, J.S.; Schouten, S. (2013). Abrupt vegetation change after the Late Quaternary megafaunal extinction in southeastern Australia. Nature Geoscience 6(8): 627-631.
    Lopes dos Santos, R.A.; De Deckker, P.; Sinninghe Damsté, J.S.; Schouten, S. (2013). A late Quaternary sedimentary record of steryl alkyl ethers from offshore southeastern Australia. Org. Geochem. 54: 140-145.
    Lopes dos Santos, R.A.; Spooner, M.I.; Barrows, T.Y.; De Deckker, P.; Sinninghe Damsté, J.S.; Schouten, S. (2013). Comparison of organic (UK'37, TEXH86, LDI) and faunal proxies (foraminiferal assemblages) for reconstruction of late Quaternary sea surface temperature variability from offshore southeastern Australia. Paleoceanography 28(3): 377–387.
    Losey, N.A.; Stevenson, B.S.; Busse, H.-J.; Sinninghe Damsté, J.S.; Rijpstra, W.I.C.; Rudd, S.; Lawson, P.A. (2013). Thermoanaerobaculum aquaticum gen. nov., sp. nov., the first cultivated member of Acidobacteria subdivision 23, isolated from a hot spring. Int. J. Syst. Evol. Microbiol. 63: 4149-4157.
    Luque, P.L.; Pierce, G.J.; Learmonth, J.A.; Leno, E.; Santos, B.; López, A.; Reid, R.J.; Rogan, E.; Boon, J.; Lockyer, C.H. (2013). Are mineralization anomalies in common dolphin teeth associated with life-history events and/or the exposure toanthropogenic pollutants? J. Zool. (1987) 291: 194-204.
    Ly, J. (2013). Microalgal primary producers and their limiting resources. PhD Thesis. Universiteit van Amsterdam: [s.l.]. ISBN 9789461918321. 174 pp.
    Miyatake, T.; MacGregor, B.J.; Boschker, H.T.S. (2013). Depth-Related Differences in Organic Substrate Utilization by Major Microbial Groups in Intertidal Marine Sediment. Appl. Environ. Microbiol. 79(1): 389-392.
    Moore, E.K.; Hopmans, E.C.; Rijpstra, W.I.C.; Villanueva, L.; Dedysh, S.N.; Wienk, H.; Schoutsen, F; Sinninghe Damsté, J.S. (2013). Novel Mono-, Di-, and Trimethylornithine Membrane Lipids in Northern Wetland Planctomycetes. Appl. Environ. Microbiol. 79(22): 6874-6884.
    Moreira, L.S.; Moreira-Turcq, P.; Turcq, B.; Cordeiro, R.C.; Kim, J.-H.; Caquineau, S.; Mandeng-Yogo, M.; Macario, K.D.; Sinninghe Damsté, J.S. (2013). Palaeohydrological controls on sedimentary organic matter in an Amazon floodplain lake, Lake Maracá (Brazil) during the late Holocene. Holocene 23(12): 1903– 1914.
    Motegi, C.; Tanaka, T.; Piontek, J.; Brussaard, C.P.D.; Gattuso , J.-P.; Weinbauer, M.G. (2013). Effect of CO2 enrichment on bacterial metabolism in an Arctic fjord. Biogeosciences 10(5): 3285-3296.
    Nieto-Moreno, V.; Martínez-Ruiz, F.; Willmott, V.; García-Orellana, J.; Masqué, P.; Sinninghe Damsté, J.S. (2013). Climate conditions in the westernmost Mediterranean over the last two millennia: An integrated biomarker approach. Org. Geochem. 55: 1-10.
    Pancost, R.D.; Taylor, K.W.R.; Inglis, G.N.; Kennedy, E.M,; Handley, L.; Hollis, C.J.; Crouch, E.; Pross, J.; Huber, M.; Schouten, S.; Pearson, P.N.; Morgans, H.E.G.; Raine, J.I. (2013). Early Paleogene evolution of terrestrial climate in the SW Pacific, Southern New Zealand. Geochem. Geophys. Geosyst. 14(12): 5413-5429.
    Pascal, P.-Y.; Fleeger, J.W.; Boschker, H.T.S.; Mitwally, H.M.; Johnson, D.S. (2013). Response of the benthic food web to short- and long-term nutrient enrichment in saltmarsh mudflats. Mar. Ecol. Prog. Ser. 474: 27-41.
    Reinthaler, T.; Herndl, G.J.; Álvarez-Salgado, X.A.; Álvarez, M.; van Aken, H.M. (2013). Impact of water mass mixing on the biogeochemistry and microbiology of the Northeast Atlantic Deep Water. Global Biogeochem. Cycles 27(4): 1151–1162.
    Reysenbach, A.-L.; Liu, Y.T.; Lindgren, A.N.; Wagner, I.D.; Sislak, C.D.; Mets, A.; Schouten, S. (2013). Mesoaciditoga lauensis gen. nov., sp. nov., a moderately thermoacidophilic member of the order Thermotogales from a deep-sea hydrothermal vent. Int. J. Syst. Evol. Microbiol. 63: 4724-4729 .
    Russ, L.; Kartal, B.; Op den Camp, H.J.M.; Sollai, M.; Le Bruchec, J.; Caprais, J.-C.; Godfroy, A.; Sinninghe Damsté, J.S.; Jetten, M.S.M. (2013). Presence and diversity of anammox bacteria in cold hydrocarbon-rich seeps and hydrothermal vent sediments of the Guaymas Basin. Front. Microbiol. 4(219).
    Santini, S.; Jeudy, S.; Bartoli, J.; Poirot, O.; Lescot, M.; Abergel, C.; Barbe, V.; Wommack, K.E.; Noordeloos, A.A.M.; Brussaard, C.P.D.; Claverie, J.M. (2013). Genome of Phaeocystis globosa virus PgV-16T highlights the common ancestry of the largest known DNA viruses infecting eukaryotes. Proc. Natl. Acad. Sci. U.S.A. 110(26): 10800-10805.
    Schoon, P.L. (2013). Impact of CO2 and pH on the distribution and stable carbon isotopic composition of microbial biomarker lipids. PhD Thesis. Universiteit Utrecht: [s.l.]. ISBN 978-94-6203-299-6. 185 pp.
    Schoon, P.L.; de Kluijver, A.; Middelburg, J.J.; Downing, J.A.; Sinninghe Damsté, J.S.; Schouten, S. (2013). Influence of lake water pH and alkalinity on the distribution of coreand intact polar branched glycerol dialkyl glycerol tetraethers (GDGTs) in lakes. Org. Geochem. 60: 72-82.
    Schoon, P.L.; Heilmann-Clausen, C.; Schultz, B.P.; Sluijs, A.; Sinninghe Damsté, J.S.; Schouten, S. (2013). Recognition of Early Eocene global carbon isotope excursions using lipids of marine Thaumarchaeota. Earth Planet. Sci. Lett. 373: 160-168.
    Schouten, S.; Hopmans, E.C.; Rosell-Melé, A.; Pearson, A.; Adam, P.; Bauersachs, T.; Bard, E.; Bernasconi, S.M.; Bianchi, T.S.; Brocks, J.J.; Carlson, L.T.; Castañeda, I.S.; Derenne, S.; Dogrul Selver, A.; Dutta, K.; Eglinton, T.I.; Fosse, C.; Galy, V.; Grice, K.; Hinrichs, K.U.; Huang, Y.S.; Huguet, A.; Huguet, C.; Hurley, S.; Ingalls, A.; Jia, G.; Keely, B.J.; Knappy, C.; Kondo, M.; Krishnan, S.; Lincoln, S.; Lipp, J.S.; Mangelsdorf, K.; Martínez-Garcia, A.; Ménot, G.; Mets, A.; Mollenhauer, G.; Ohkouchi, N.; Ossebaar, J.; Pagani, M.; Pancost, R.D.; Pearson, E.J.; Peterse, F.; Reichart, G.J.; Schaeffer, P.; Schmitt, G.; Schwark, L.; Shah, S.R.; Smith, R.W.; Smittenberg, R.H.; Summons, R.E.; Takano, Y.; Talbot, H.M.; Taylor, K.W.R.; Tarozo, R.; Uchida, M.; van Dongen, B.E.; Van Mooy, B.A.S.; Wang, J.; Warren, C.; Weijers, J.W.H.; Werne, J.P.; Woltering, M.; Xie, S.; Yamamoto, M.; Jang, H.; Zhang, C.L.; Zhang, Y.; Zhang, M.; Sinninghe Damsté, J.S. (2013). An interlaboratory study of TEX86 and BIT analysis of sediments, extracts, and standard mixtures. Geochem. Geophys. Geosyst. 14(12): 5263–5285.
    Schouten, S.; Hopmans, E.C.; Sinninghe Damsté, J.S. (2013). The organic geochemistry of glycerol dialkyl glycerol tetraether lipids: A review. Org. Geochem. 54: 19-61.
    Schouten, S.; Villareal, T.A.; Hopmans, E.C.; Mets, A.; Swanson, K.M.; Sinninghe Damsté, J.S. (2013). Endosymbiotic heterocystous cyanobacteria synthesize different heterocyst glycolipids than free-living heterocystous cyanobacteria. Phytochemistry 85: 115-121.
    Schulz, K.G.; Bellerby, R.G.J.; Brussaard, C.P.D.; Büdenbender, J.; Czerny, J.; Engel, A.; Fischer, M.; Koch-Klavsen, S.; Krug, S.A.; Lischka, S.; Ludwig, A.; Meyerhöfer, M.; Nondal, G.; Silyakova, A.; Stuhr, A.; Riebesell, U. (2013). Temporal biomass dynamics of an Arctic plankton bloom in response toincreasing levels of atmospheric carbon dioxide. Biogeosciences 10(1): 161-180.
    Sheik, A.R.; Brussaard, C.P.D.; Lavik, G.; Foster, R.A.; Musat, N.; Adam, B.; Kuypers, M.M.M. (2013). Viral infection of Phaeocystis globosa impedes release of chitinous star-like structures: quantification using single cell approaches. Environ. Microbiol. 15(5): 1441-1451.
    Sintes, E.; Witte, H.; Stodderegger, K.; Steiner, P.; Herndl, G.J. (2013). Temporal dynamics in the free-living bacterial community composition in the coastal North Sea. FEMS Microbiol. Ecol. 83(2): 413-424.
    Smedes, F.; van Vliet, L.A.; Booij, K. (2013). Multi-Ratio Equilibrium Passive Sampling Method to Estimate Accessible and Pore Water Concentrations of Polycyclic Aromatic Hydrocarbons and Polychlorinated Biphenyls in Sediment. Environ. Sci. Technol. 47(1): 510-517.
    Smith, M.; De Deckker, P.; Rogers, J.; Brocks, J.; Hope, J.; Schmidt, S.; Lopes dos Santos, R.; Schouten, S. (2013). Comparison of UK37, TEXH86 and LDI temperature proxies for reconstruction of south-east Australian ocean temperatures. Org. Geochem. 64: 94-104.
    Stehouwer, P.P.; Liebich, V.; Peperzak, L. (2013). Flow cytometry, microscopy, and DNA analysis as complementary phytoplankton screening methods in ballast water treatment studies. J. Appl. Phycol. 25(4): 1047-1053.
    Stehouwer, P.P.; van Slooten, C.; Peperzak, L. (2013). Microbial dynamics in acetate-enriched ballast water at different temperatures. Ecotoxicol. Environ. Saf. 96: 93-98.
    Swierts, T.; Peijnenburg, K.T.C.A.; de Leeuw, C.; Cleary, D.F.R.; Hörnlein, C.; Setiawan, E.; Wörheide, G.; Erpenbeck, D.; de Voogd, N.J. (2013). Lock, Stock and Two Different Barrels: Comparing the Genetic Composition of Morphotypes of the Indo-Pacific Sponge Xestospongia testudinaria. PLoS One 8(9): e74396.
    Turich, C.; Schouten, S.; Thunell, R.C.; Varela, R.; Astor, Y.; Wakeham, S.G. (2013). Comparison of TEX86 and UK37 temperature proxies in sinking particles in the Cariaco Basin. Deep-Sea Res., Part 1, Oceanogr. Res. Pap. 78: 115-133.
    van de Poll, W.H.; Kulk, G.; Timmermans, K.R.; Brussaard, C.P.D.; van der Woerd, H.J.; Kehoe, M.J.; Mojica, K.D.A.; Visser, R.J.W.; Rozema, P.D.; Buma, A.G.J. (2013). Phytoplankton chlorophyll a biomass, composition, and productivity along a temperature and stratification gradient in the northeast Atlantic Ocean. Biogeosciences 10(6): 4227-4240.
    van der Meer, M.T.J.; Benthien, A.; Bijma, J.; Schouten, S.; Sinninghe Damsté, J.S. (2013). Alkenone distribution impacts the hydrogen isotopic composition of the C37:2 and C37:3 alkan-2-ones in Emiliania huxleyi. Geochim. Cosmochim. Acta 111: 162-166.
    Van Oostende, N.; Moerdijk-Poortvliet, T.C.W.; Boschker, H.T.S.; Vyverman, W.; Sabbe, K. (2013). Release of dissolved carbohydrates by Emiliania huxleyi and formation of transparent exopolymer particles depend on algal life cycle and bacterial activity. Environ. Microbiol. 15(5): 1514-1531.
    van Soelen, E.E.; Wagner-Cremer, F.; Sinninghe Damsté, J.S.; Reichart, G.J. (2013). Reconstructing tropical cyclone frequency using hydrogen isotope ratios of sedimentary n-alkanes in northern Queensland, Australia. Palaeogeogr. Palaeoclimatol. Palaeoecol. 376: 66-72.
    Veuger, B.; Pitcher, A.; Schouten, S.; Sinninghe Damsté, J.S.; Middelburg, J.J. (2013). Nitrification and growth of autotrophic nitrifying bacteria and Thaumarchaeota in the coastal North Sea. Biogeosciences 10(3): 1775-1785.
    Vissers, E.W.; Blaga, C.I.; Bodelier, P.L.E.; Muyzer, G.; Schleper, C.; Sinninghe Damsté, J.S.; Tourna, M.; Laanbroek, H.J. (2013). Seasonal and vertical distribution of putative ammonia-oxidizing thaumarchaeotal communities in an oligotrophic lake. FEMS Microbiol. Ecol. 83(2): 515-526.
    Voss, B.; Bolhuis, H.; Fewer, D.P.; Kopf, M.; Möke, F.; Haas, F.; El-Shehawy, R.; Hayes, P.; Bergman, B.; Sivonen, K.; Dittmann, E.; Scanlan, D.J.; Hagemann, M.; Stal, L.J.; Hess, W.R. (2013). Insights into the Physiology and Ecology of the Brackish-Water-Adapted Cyanobacterium Nodularia spumigena CCY9414 Based on a Genome-Transcriptome Analysis. PLoS One 8(3).
    Zell, C.; Kim, J.-H.; Abril, G.; Lima Sobrinho, R.; Dorhout, D.; Moreiro-Turcq, P.; Sinninghe Damsté, J.S. (2013). Impact of seasonal hydrological variation on the distributions of tetraether lipids along the Amazon River in the central Amazon basin: implications for the MBT/CBT paleothermometer and the BIT index. Front. Microbiol. 4(228).
    Zell, C.; Kim, J.H.; Moreira-Turcq, P.; Abril, G.; Hopmans, E.C.; Bonnet, M.-P.; Lima Sobrinho, R.; Sinninghe Damsté, J.S. (2013). Disentangling the origins of branched tetraether lipids and crenarchaeol in the lower Amazon River: Implications for GDGT-based proxies. Limnol. Oceanogr. 58(1): 343-353.
  • 2012
    Baltar, F.; Aristegui, J.; Gasol, J.M.; Herndl, G.J. (2012). Microbial Functioning and Community Structure Variability in the Mesopelagic and Epipelagic Waters of the Subtropical Northeast Atlantic Ocean. Appl. Environ. Microbiol. 78(9): 3309-3316.
    Bednaršek, N.; Tarling, G.A.; Bakker, D.C.E.; Fielding, S.; Jones, E.M.; Venables, H.J.; Ward, P.; Kuzirian, A.; Lézé, B.; Feely, R.A.; Murphy, E.J. (2012). Extensive dissolution of live pteropods in the Southern Ocean. Nature Geoscience 5(12): 881-885.
    Berke, M.A.; Johnson, T.C.; Werne, J.P.; Grice, K.; Schouten, S.; Sinninghe Damsté, J.S. (2012). Molecular records of climate variability and vegetation response since the Late Pleistocene in the Lake Victoria basin, East Africa. Quat. Sci. Rev. 55: 59-74.
    Berke, M.A.; Johnson, T.C.; Werne, J.P.; Schouten, S.; Sinninghe Damsté, J.S. (2012). A mid-Holocene thermal maximum at the end of the African Humid Period. Earth Planet. Sci. Lett. 351: 95-104.
    Booij, K.; Arifin, Z.; Purbonegoro, T. (2012). Perylene dominates the organic contaminant profile in the Berau delta, East Kalimantan, Indonesia. Mar. Pollut. Bull. 64(5): 1049-1054.
    Brandsma, J.; Hopmans, E.C.; Brussaard, C.P.D.; Witte, H.J.; Schouten, S.; Sinninghe Damsté, J.S. (2012). Spatial distribution of intact polar lipids in North Sea surface waters: Relationship with environmental conditions and microbial community composition. Limnol. Oceanogr. 57(4): 959-973.
    Brandsma, J.; Hopmans, E.C.; Philippart, C.J.M.; Veldhuis, M.J.W.; Schouten, S.; Sinninghe Damsté, J.S.S. (2012). Low temporal variation in the intact polar lipid composition of North Sea coastal marine water reveals limited chemotaxonomic value. Biogeosciences 9(3): 1073-1084.
    Coulon, F.; Chronopoulou, P.M.; Fahy, A.; Païssé, S.; Goñi-Urriza, M.; Peperzak, L.; Acuña Alvarez, L.; McKew, B.A.; Underwood, G.J.C.; Brussaard, C.P.D.; Timmis, K.N.; Duran, R.; McGenity, T.J. (2012). Central Role of Dynamic Tidal Biofilms Dominated by Aerobic Hydrocarbonoclastic Bacteria and Diatoms in the Biodegradation of Hydrocarbons in Coastal Mudflats. Appl. Environ. Microbiol. 78(10): 3638-3648.
    De Corte, D.; Sintes, E.; Yokokawa, T.; Reinthaler, T.; Herndl, G.J. (2012). Links between viruses and prokaryotes throughout the water column along a North Atlantic latitudinal transect. ISME J. 6(8): 1566-1577.
    de Jong, J.; Schoemann, V.; Lannuzel, D.; Croot, P.; de Baar, H.; Tison, J.-L. (2012). Natural iron fertilization of the Atlantic sector of the Southern Ocean by continental shelf sources of the Antarctic Peninsula. J. Geophys. Res. 117(G01029): 25.
    Dedysh, S.N.; Kulichevskaya, I.S.; Serkebaeva, Y.M.; Mityaeva, M.A.; Sorokin, V.V.; Suzina, N.E.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S. (2012). Bryocella elongata gen. nov., sp nov., a member of subdivision 1 of the Acidobacteria isolated from a methanotrophic enrichment culture, and emended description of Edaphobacter aggregans Koch et al. 2008. Int. J. Syst. Evol. Microbiol. 62: 654-664.
    Eelderink, C.; Moerdijk-Poortvliet, T.C.W.; Wang, H.W.; Schepers, M.; Preston, T.; Boer, T.; Vonk, R.J.; Schierbeek, H.; Priebe, M.G. (2012). The Glycemic Response Does Not Reflect the In Vivo Starch Digestibility of Fiber-Rich Wheat Products in Healthy Men. J. Nutr. 142(2): 258-263.
    Evans, C.; Brussaard, C.P.D. (2012). Viral lysis and microzooplankton grazing of phytoplankton throughout the Southern Ocean. Limnol. Oceanogr. 57(6): 1826-1837.
    Evans, C.; Brussaard, C.P.D. (2012). Regional Variation in Lytic and Lysogenic Viral Infection in the Southern Ocean and Its Contribution to Biogeochemical Cycling. Appl. Environ. Microbiol. 78(18): 6741-6748.
    Fallet, U.; Castañeda, I.S; Henry-Edwards, A; Richter, T.O.; Boer, W.; Schouten, S.; Brummer, G.J. (2012). Sedimentation and burial of organic and inorganic temperature proxies in the Mozambique Channel, SW Indian Ocean. Deep-Sea Res., Part 1, Oceanogr. Res. Pap. 59: 37-53.
    Fietz, S.; Huguet, C.; Bendle, J.; Escala, M.; Gallacher, C.; Herfort, L.; Jamieson, R.; Martínez-Garcia, A.; McClymont, E.L.; Peck, V.L.; Prahl, F.G.; Rossi, S.; Rueda, G.; Sanson-Barrera, A.; Rosell-Melé, A. (2012). Co-variation of crenarchaeol and branched GDGTs in globally-distributed marine and freshwater sedimentary archives. Global Planet. Change 92-93: 275-285.
    Flores, G.E.; Hunter, R.C.; Liu, Y.T.; Mets, A.; Schouten, S.; Reysenbach, A.L. (2012). Hippea jasoniae sp. nov. and Hippea alviniae sp. nov., thermoacidophilic members of the class Deltaproteobacteria isolated from deep-sea hydrothermal vent deposits. Int. J. Syst. Evol. Microbiol. 62: 1252-1258.
    Garcia Costas, A.M.; Tsukatani, Y.; Rijpstra, W.I.C.; Schouten, S.; Welander, P.V.; Summons, R.E.; Bryant, D.A. (2012). Identification of the Bacteriochlorophylls, Carotenoids, Quinones, Lipids, and Hopanoids of "Candidatus Chloracidobacterium thermophilum". J. Bacteriol. 194(5): 1158-1168.
    Handley, L.; O'Halloran, A.; Pearson, P.N.; Hawkins, E.; Nicholas, C.J.; Schouten, S.; McMillan, I.K.; Pancost, R.D. (2012). Changes in the hydrological cycle in tropical East Africa during the Paleocene-Eocene Thermal Maximum. Palaeogeogr. Palaeoclimatol. Palaeoecol. 329: 10-21.
    Hannula, S.E.; Boschker, H.T.S.; de Boer, W.; van Veen, J.A. (2012). 13C pulse-labeling assessment of the community structure of active fungi in the rhizosphere of a genetically starch-modified potato (Solanum tuberosum) cultivar and its parental isoline. New Phytol. 194(3): 784-799.
    Harada, N.; Sato, M.; Seki, O.; Timmermann, A.; Moossen, H.; Bendle, J.; Nakamura, Y.; Kimoto, K.; Okazaki, Y.; Nagashima, K.; Gorbarenko, S.A.; Ijiri, A.; Nakatsuka, T.; Menviel, L.; Chikamoto, M.O.; Abe-Ouchi, A.; Schouten, S. (2012). Sea surface temperature changes in the Okhotsk Sea and adjacent North Pacific during the last glacial maximum and deglaciation. Deep-Sea Res., Part 2, Top. Stud. Oceanogr. 61-64: 93-105.
    Ismail-Ben Ali, A.; El Bour, M.; Ktari, L.; Bolhuis, H.; Ahmed, M.; Boudabbous, A.; Stal, L. (2012). Jania rubens-associated bacteria: molecular identification and antimicrobial activity. J. Appl. Phycol. 24(3): 525-534.
    Jenkyns, H.C.; Schouten-Huibers, L.; Schouten, S.; Sinninghe Damsté, J.S. (2012). Warm Middle Jurassic-Early Cretaceous high-latitude sea-surface temperatures from the Southern Ocean. Clim. Past 8(1): 215-226.
    Kabel, K.; Moros, M.; Porsche, C.; Neumann, T.; Adolphi, F.; Andersen, T.J.; Siegel, H.; Gerth, M.; Leipe, T.; Jansen, E.; Sinninghe Damsté, J.S. (2012). Impact of climate change on the Baltic Sea ecosystem over the past 1,000 years. Nat. Clim. Chang. 2(12): 871-874.
    Kaserzon, S.L.; Kennedy, K.; Hawker, D.W.; Thompson, J.; Carter, S.; Roach, A.C.; Booij, K.; Mueller, J.F. (2012). Development and Calibration of a Passive Sampler for Perfluorinated Alkyl Carboxylates and Sulfonates in Water. Environ. Sci. Technol. 46(9): 4985-4993.
    Kim, J.G.; Jung, M.Y.; Park, S.J.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Madsen, E.L.; Min, D.; Kim, J.S.; Kim, G.J.; Rhee, S.K. (2012). Cultivation of a highly enriched ammonia-oxidizing archaeon of thaumarchaeotal group I.1b from an agricultural soil. Environ. Microbiol. 14(6): 1528-1543.
    Kim, J.H.; Crosta, X.; Willmott, V.; Renssen, H.; Bonnin, J.; Helmke, P.; Schouten, S.; Sinninghe Damsté, J.S. (2012). Holocene subsurface temperature variability in the eastern Antarctic continental margin. Geophys. Res. Lett. 39.
    Kim, J.H.; Romero, O.E.; Lohmann, G.; Donner, B.; Laepple, T.; Haam, E.; Sinninghe Damsté, J.S. (2012). Pronounced subsurface cooling of North Atlantic waters off Northwest Africa during Dansgaard-Oeschger interstadials. Earth Planet. Sci. Lett. 339: 95-102.
    Kim, J.H.; Zell, C.; Moreira-Turcq, P.; Pérez, M.A.P.; Abril, G.; Mortillaro, J.M.; Weijers, J.W.H.; Meziane, T.; Sinninghe Damsté, J.S. (2012). Tracing soil organic carbon in the lower Amazon River and its tributaries using GDGT distributions and bulk organic matter properties. Geochim. Cosmochim. Acta 90: 163-180.
    Kool, D.M.; Zhu, B.L.; Rijpstra, W.I.C.; Jetten, M.S.M.; Ettwig, K.F.; Sinninghe Damsté, J.S. (2012). Rare Branched Fatty Acids Characterize the Lipid Composition of the Intra-Aerobic Methane Oxidizer "Candidatus Methylomirabilis oxyfera". Appl. Environ. Microbiol. 78(24): 8650-8656.
    Kulichevskaya, I.S.; Detkova, E.N.; Bodelier, P.L.E.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Dedysh, S.N. (2012). Singulisphaera rosea sp nov., a planctomycete from acidic Sphagnum peat, and emended description of the genus Singulisphaera. Int. J. Syst. Evol. Microbiol. 62: 118-123.
    Kulichevskaya, I.S.; Kostina, L.A.; Valáškova, V.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; de Boer, W.; Dedysh, S.N. (2012). Acidicapsa borealis gen. nov., sp. nov. and Acidicapsa ligni sp. nov., subdivision 1 Acidobacteria from Sphagnum peat and decaying wood. Int. J. Syst. Evol. Microbiol. 62: 1512-1520.
    Kulichevskaya, I.S.; Serkebaeva, Y.M.; Kim, Y.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Liesack, W.; Dedysh, S.N. (2012). Telmatocola sphagniphila gen. nov., sp. nov., a Novel Dendriform Planctomycete from Northern Wetlands. Front. Microbiol. 3: 146; 1-9.
    Kulk, G.; de Vries, P.; van de Poll, W.H.; Visser, R.J.W.; Buma, A.G.J. (2012). Temperature-dependent growth and photophysiology of prokaryotic and eukaryotic oceanic picophytoplankton. Mar. Ecol. Prog. Ser. 466: 43-55.
    Lengger, S.K.; Hopmans, E.C.; Reichart, G.J.; Nierop, K.G.J.; Sinninghe Damsté, J.S.; Schouten, S. (2012). Intact polar and core glycerol dibiphytanyl glycerol tetraether lipids in the Arabian Sea oxygen minimum zone. Part II: Selective preservation and degradation in sediments and consequences for the TEX86. Geochim. Cosmochim. Acta 98: 244-258.
    Lengger, S.K.; Hopmans, E.C.; Sinninghe Damsté, J.S.; Schouten, S. (2012). Comparison of extraction and work up techniques for analysis of core and intact polar tetraether lipids from sedimentary environments. Org. Geochem. 47: 34-40.
    Liebich, V.; Stehouwer, P.P.; Veldhuis, M. (2012). Re-growth of potential invasive phytoplankton following UV-based ballast water treatment. Aquat. Invasions 7(1): 29-36.
    Lohmann, R.; Booij, K.; Smedes, F.; Vrana, B. (2012). Use of passive sampling devices for monitoring and compliance checking of POP concentrations in water. Environm. Sc. & Poll. Res. 19(6): 1885-1895.
    Loomis, S.E.; Russell, J.M.; Ladd, B.; Street-Perrott, F.A.; Sinninghe Damsté, J.S. (2012). Calibration and application of the branched GDGT temperature proxy on East African lake sediments. Earth Planet. Sci. Lett. 357: 277-288.
    Lopes dos Santos, R.A. (2012). Reconstruction of late Quaternary marine and terrestrial environmental conditions of Northwest Africa and Southeast Australia A multiple organic proxy study using marine sediments. PhD Thesis. Universiteit Utrecht: [s.l.]. ISBN 978-94-6203-218-7. 145 pp.
    Lopes dos Santos, R.A.; Wilkins, D.; De Deckker, P.; Schouten, S. (2012). Late Quaternary productivity changes from offshore Southeastern Australia: A biomarker approach. Palaeogeogr. Palaeoclimatol. Palaeoecol. 363: 48-56.
    McKay, R.; Naish, T.; Carter, L.; Riesselman, C.; Dunbar, R.; Sjunneskog, C.; Winter, D.; Sangiorgi, F.; Warren, C.; Pagani, M.; Schouten, S.; Willmott, V.; Levy, R.; DeConto , R.M.; Powell, R.D. (2012). Antarctic and Southern Ocean influences on Late Pliocene global cooling. Proc. Natl. Acad. Sci. U.S.A. 109(17): 6423-6428.
    Mutterlose, J.; Malkoc, M.; Schouten, S.; Sinninghe Damsté, J.S. (2012). Reconstruction of vertical temperature gradients in past oceans - Proxy data from the Hauterivian-early Barremian (Early Cretaceous) of the Boreal Realm. Palaeogeogr. Palaeoclimatol. Palaeoecol. 363: 135-143.
    Niemann, H.; Stadnitskaia, A.; Wirth, S.B.; Gilli, A.; Anselmetti, F.S.; Sinninghe Damsté, J.S.S.; Schouten, S.; Hopmans, E.C.; Lehmann, M.F. (2012). Bacterial GDGTs in Holocene sediments and catchment soils of a high Alpine lake: application of the MBT/CBT-paleothermometer. Clim. Past 8(3): 889-906.
    Pade, N.; Compaoré, J.; Klähn, S.; Stal, L.J.; Hagemann, M. (2012). The marine cyanobacterium Crocosphaera watsonii WH8501 synthesizes the compatible solute trehalose by a laterally acquired OtsAB fusion protein. Environ. Microbiol. 14(5): 1261-1271.
    Peterse, F.; van der Meer, J.; Schouten, S.; Weijers, J.W.H.; Fierer, N.; Jackson, R.B.; Kim, J.H.; Sinninghe Damsté, J.S. (2012). Revised calibration of the MBT-CBT paleotemperature proxy based on branched tetraether membrane lipids in surface soils. Geochim. Cosmochim. Acta 96: 215-229.
    Pfreundt, U.; Stal, L.J.; Voss, B.; Hess, W.R. (2012). Dinitrogen fixation in a unicellular chlorophyll d-containing cyanobacterium. ISME J. 6(7): 1367-1377.
    Philippart, C.J.M.; Amaral, A.; Asmus, R.; van Bleijswijk, J.; Bremner, J.; Buchholz, F.; Cabanellas-Reboredo, M.; Catarino, D.; Cattrijsse, A.; Charles, F.; Comtet, T.; Cunha, A.; Deudero, S.; Duchêne, J.-C.; Fraschetti, S.; Gentil, F.; Gittenberger, A.; Guizien, K.; Gonçalves, J.M.; Guarnieri, G.; Hendriks, I.; Hussel, B.; Pinheiro Vieira, R.; Reijnen, B.T.; Sampaio, I.; Serrão, E.; Sousa Pinto, I.; Thiebaut, E.; Viard, F.; Zuur, A.F. (2012). Spatial synchronies in the seasonal occurrence of larvae of oysters (Crassostrea gigas) and mussels (Mytilus edulis/galloprovincialis) in European coastal waters. Est., Coast. and Shelf Sci. 108: 52-63.
    Pross, J.; Contreras, L.; Bijl, P.K.; Greenwood, D.R.; Bohaty, S.M.; Schouten, S.; Bendle, J.A.; Röhl, U.; Tauxe, L.; Raine, J.I.; Huck, C.E.; van de Flierdt, T.; Jamieson, S.S.R.; Stickley, C.E.; van de Schootbrugge, B.; Escutia, C.; Escutia, C.; Brinkhuis, H. (2012). Persistent near-tropical warmth on the Antarctic continent during the early Eocene epoch. Nature (Lond.) 488(7409): 73-77.
    Rampen, S.W.; Willmott, V.; Kim, J.H.; Uliana, E.; Mollenhauer, G.; Schefuss, E.; Sinninghe Damsté, J.S.; Schouten, S. (2012). Long chain 1,13-and 1,15-diols as a potential proxy for palaeotemperature reconstruction. Geochim. Cosmochim. Acta 84: 204-216.
    Raven, J.A.; Crawfurd, K. (2012). Environmental controls on coccolithophore calcification. Mar. Ecol. Prog. Ser. 470: 137-166.
    Richoz, S.; van de Schootbrugge, B.; Pross, J.; Püttmann, W.; Quan, T.M.; Lindström, S.; Heunisch, C.; Fiebig, J.; Maquil, R.; Schouten, S.; Hauzenberger, C.A.; Wignall, P.B. (2012). Hydrogen sulphide poisoning of shallow seas following the end-Triassic extinction. Nature Geoscience 5(9): 662-667.
    Rush, D.; Hopmans, E.C.; Wakeham, S.G.; Schouten, S.; Sinninghe Damsté, J.S. (2012). Occurrence and distribution of ladderane oxidation products in different oceanic regimes. Biogeosciences 9(7): 2407-2418.
    Rush, D.; Wakeham, S.G.; Hopmans, E.C.; Schouten, S.; Sinninghe Damsté, J.S. (2012). Biomarker evidence for anammox in the oxygen minimum zone of the Eastern Tropical North Pacific. Org. Geochem. 53: 80-87.
    Rush, D.J. (2012). Ladderanes as tracers for present and past anaerobic ammonium oxidation. PhD Thesis. Universiteit Utrecht: [s.l.]. ISBN 978-94-6203-168-5. 133 pp.
    Sachse, D.; Billault, I.; Bowen, G.J.; Chikaraishi, Y.; Dawson, T.E.; Feakins, S.J.; Freeman, Katherine; Magill, C.R.; McInerney, F.A.; van der Meer, M.T.J.; Polissar, P.; Robins, R.J.; Sachs, J.P.; Schmidt, H.L.; Sessions, A.L.; White, J.W.C.; West, J.B.; Kahmen, A. (2012). Molecular Paleohydrology: Interpreting the Hydrogen- Isotopic Composition of Lipid Biomarkers from Photosynthesizing Organisms. Annu. Rev. Earth Planet. Sci. 40: 221-249.
    Sáenz, J.P.; Hopmans, E.C.; Rogers, D.; Henderson, P.B.; Charette, M.A.; Schouten, S.; Casciotti, K.L.; Sinninghe Damsté, J.S.; Eglinton, T.I. (2012). Distribution of anaerobic ammonia-oxidizing bacteria in a subterranean estuary. Mar. Chem. 136: 7-13.
    Sauder, L.A.; Peterse, F.; Schouten, S.; Neufeld, J.D. (2012). Low-ammonia niche of ammonia-oxidizing archaea in rotating biological contactors of a municipal wastewater treatment plant. Environ. Microbiol. 14(9): 2589-2600.
    Schouten, S.; Pitcher, A.; Hopmans, E.C.; Villanueva, L.; van Bleijswijk, J.; Sinninghe Damsté, J.S. (2012). Intact polar and core glycerol dibiphytanyl glycerol tetraether lipids in the Arabian Sea oxygen minimum zone: I. Selective preservation and degradation in the water column and consequences for the TEX86. Geochim. Cosmochim. Acta 98: 228-243.
    Seki, O.; Schmidt, D.N.; Schouten, S.; Hopmans, E.C.; Sinninghe Damsté, J.S.; Pancost, R.D. (2012). Paleoceanographic changes in the Eastern Equatorial Pacific over the last 10 Myr. Paleoceanography 27.
    Severin, I.; Confurius-Guns, V.; Stal, L.J. (2012). Effect of salinity on nitrogenase activity and composition of the active diazotrophic community in intertidal microbial mats. Arch. Microbiol. 194(6): 483-491.
    Sheik, A.R. (2012). Viral regulation of nutrient assimilation by algae and prokaryotes. PhD Thesis. Universität Bremen: [s.l.]. 1-137 pp.
    Sinninghe Damsté, J.S.; Ossebaar, J.; Schouten, S.; Verschuren, D. (2012). Distribution of tetraether lipids in the 25-ka sedimentary record of Lake Challa: extracting reliable TEX86 and MBT/CBT palaeotemperatures from an equatorial African lake. Quat. Sci. Rev. 50: 43-54.
    Sinninghe Damsté, J.S.; Rijpstra, W.I.C.; Hopmans, E.C.; Jung, M.Y.; Kim, J.G.; Rhee, S.K.; Stieglmeier, M.; Schleper, C. (2012). Intact Polar and Core Glycerol Dibiphytanyl Glycerol Tetraether Lipids of Group I.1a and I.1b Thaumarchaeota in Soil. Appl. Environ. Microbiol. 78(19): 6866-6874.
    Smetacek, V.; Klaas, C.; Strass, V.H.; Assmy, P.; Montresor, M.; Cisewski, B.; Savoye, N.; Webb, A.; d'Ovidio, F.; Arrieta, J.M.; Bathmann, U.; Bellerby, R.; Berg, G.M.; Croot, P.; Gonzalez, S.; Henjes, J.; Herndl, G.J.; Hoffmann, L.J.; Leach, H.; Losch, M.; Mills, M.M.; Neill, C.; Peeken, I.; Röttgers, R.; Sachs, O.; Sauter, E.; Schmidt, M.M.; Schwarz, J.; Terbrüggen, A.; Wolf-Gladrow, D. (2012). Deep carbon export from a Southern Ocean iron-fertilized diatom bloom. Nature (Lond.) 487(7407): 313-319.
    Sorokin, D.Y.; Lücker, S.; Vejmelkova, D.; Kostrikina, N.A.; Kleerebezem, R.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Le Paslier, D.; Muyzer, G.; Wagner, M.; van Loosdrecht, M.C.M.; Daims, H. (2012). Nitrification expanded: discovery, physiology and genomics of a nitrite-oxidizing bacterium from the phylum Chloroflexi. ISME J. 6(12): 2245-2256.
    Tagliabue, A.; Mtshali, T.; Aumont, O.; Bowie, A.R.; Klunder, M.B.; Roychoudhury, A.N.; Swart, S. (2012). A global compilation of dissolved iron measurements: focus on distributions and processes in the Southern Ocean. Biogeosciences 9(6): 2333-2349.
    Thomas, H.; Craig, S.E.; Greenan, B.J.W.; Burt, W.; Herndl, G.J.; Higginson, S.; Salt, L.; Shadwick, E.H.; Urrego-Blanco, J. (2012). Direct observations of diel biological CO2 fixation on the Scotian Shelf, northwestern Atlantic Ocean. Biogeosciences 9(6): 2301-2309.
    Tierney, J.E.; Schouten, S.; Pitcher, A.; Hopmans, E.C.; Sinninghe Damsté, J.S. (2012). Core and intact polar glycerol dialkyl glycerol tetraethers (GDGTs) in Sand Pond, Warwick, Rhode Island (USA): Insights into the origin of lacustrine GDGTs. Geochim. Cosmochim. Acta 77: 561-581.
    van Bentum, E.C.; Reichart, G.J.; Forster, A.; Sinninghe Damsté, J.S.S. (2012). Latitudinal differences in the amplitude of the OAE-2 carbon isotopic excursion: pCO2 and paleo productivity. Biogeosciences 9(2): 717-731.
    van Bentum, E.C.; Reichart, G.J.; Sinninghe Damsté, J.S. (2012). Organic matter provenance, palaeoproductivity and bottom water anoxia during the Cenomanian/Turonian oceanic anoxic event in the Newfoundland Basin (northern proto North Atlantic Ocean). Org. Geochem. 50: 11-18.
    van Winden, J.F.; Reichart, G.J.; McNamara, N.P.; Benthien, A.; Sinninghe Damsté, J.S. (2012). Temperature-Induced Increase in Methane Release from Peat Bogs: A Mesocosm Experiment. PLoS One 7(6): e39614.
    van Winden, J.F.; Talbot, H.M.; De Vleeschouwer, F.; Reichart, G.J.; Sinninghe Damsté, J.S. (2012). Variation in methanotroph-related proxies in peat deposits from Misten Bog, Hautes-Fagnes, Belgium. Org. Geochem. 53: 73-79.
    van Winden, J.F.; Talbot, H.M.; Kip, N.; Reichart, G.J.; Pol, A.; McNamara, N.P.; Jetten, M.S.M.; Op den Camp, H.J.M.; Sinninghe Damsté, J.S. (2012). Bacteriohopanepolyol signatures as markers for methanotrophic bacteria in peat moss. Geochim. Cosmochim. Acta 77: 52-61.
    Wade, B.S.; Houben, A.J.P.; Quaijtaal, W.; Schouten, S.; Rosenthal, Y.; Miller, K.G.; Katz, M.E.; Wright, J.D.; Brinkhuis, H. (2012). Multiproxy record of abrupt sea-surface cooling across the Eocene-Oligocene transition in the Gulf of Mexico. Geology (Boulder Colo.) 40(2): 159-162.
    Wakeham, S.G.; Turich, C.; Schubotz, F.; Podlaska, A.; Li, X.N.; Varela, R.; Astor, Y.; Sáenz, J.P.; Rush, D.; Sinninghe Damsté, J.S.; Summons, R.E.; Taylor, G.T.; Scranton, M.I.; Hinrichs, K.U. (2012). Biomarkers, chemistry and microbiology show chemoautotrophy in a multilayer chemocline in the Cariaco Basin. Deep-Sea Res., Part 1, Oceanogr. Res. Pap. 63: 133-156.
    Weinbauer, M.G.; Ogier, J.; Maier, C. (2012). Microbial abundance in the coelenteron and mucus of the cold-water Coral Lophelia pertusa and in bottom water of the reef environment. Aquat. Biol. 16(3): 209-216.
    Woltering, M.; Werne, J.P.; Kish, J.L.; Hicks, R.; Sinninghe Damsté, J.S.; Schouten, S. (2012). Vertical and temporal variability in concentration and distribution of thaumarchaeotal tetraether lipids in Lake Superior and the implications for the application of the TEX86 temperature proxy. Geochim. Cosmochim. Acta 87: 136-153.
    Yan, J.; Haaijer, S.C.M.; Op den Camp, H.J.M.; van Niftrik, L.; Stahl, D.A.; Könneke, M.; Rush, D.; Sinninghe Damsté, J.S.; Hu, Y.Y.; Jetten, M.S.M. (2012). Mimicking the oxygen minimum zones: stimulating interaction of aerobic archaeal and anaerobic bacterial ammonia oxidizers in a laboratory-scale model system. Environ. Microbiol. 14(12): 3146-3158.
    Yokokawa, T.; Sintes, E.; de Corte, D.; Olbrich, K.; Herndl, G.J. (2012). Differentiating leucine incorporation of Archaea and Bacteria throughout the water column of the eastern Atlantic using metabolic inhibitors. Aquat. Microb. Ecol. 66(3): 247-256.
  • 2011
    Agogue, H.; Lamy, D.; Neal, P.R.; Sogin, M.L.; Herndl, G.J. (2011). Water mass-specificity of bacterial communities in the North Atlantic revealed by massively parallel sequencing. Mol. Ecol. 20(2): 258-274.
    Bauersachs, T.; Compaoré, J.; Severin, I.; Hopmans, E.C.; Schouten, S.; Stal, L.J.; Sinninghe Damsté, J.S. (2011). Diazotrophic microbial community of coastal microbial mats of the southern North Sea. Geobiol. 9(4): 349-359.
    Blaga, C.I.; Reichart, G.J.; Vissers, E.W.; Lotter, A.F.; Anselmetti, F.S.; Sinninghe Damsté, J.S.; Sinninghe Damsté, J.S. (2011). Seasonal changes in glycerol dialkyl glycerol tetraether concentrations and fluxes in a perialpine lake: Implications for the use of the TEX86 and BIT proxies. Geochim. Cosmochim. Acta 75(21): 6416-6428.
    Boere, A.C.; Rijpstra, W.I.C.; de Lange, G.J.; Malinverno, E.; Sinninghe Damsté, J.S.; Coolen, M.J.L.; Sinninghe Damsté, J.S.; Coolen, M.J.L. (2011). Exploring preserved fossil dinoflagellate and haptophyte DNA signatures to infer ecological and environmental changes during deposition of sapropel S1 in the eastern Mediterranean. Paleoceanography 26.
    Boere, A.C.; Rijpstra, W.I.C.; de Lange, G.J.; Sinninghe Damsté, J.S.; Coolen, M.J.L.; Sinninghe Damsté, J.S.; Coolen, M.J.L. (2011). Preservation potential of ancient plankton DNA in Pleistocene marine sediments. Geobiol. 9(5): 377-393.
    Boere, A.C.; Sinninghe Damsté, J.S.; Rijpstra, W.I.C.; Volkman, J.K.; Coolen, M.J.L. (2011). Source-specific variability in post-depositional DNA preservation with potential implications for DNA based paleoecological records. Org. Geochem. 42(10): 1216-1225.
    Bos, A.R.; Gumanao, G.S.; van Katwijk, M.M.; Saceda, M.M.; Tejada, R.L.P.; Mueller, B. (2011). Ontogenetic habitat shift, population growth, and burrowing behavior of the Indo-Pacific beach star, Archaster typicus (Echinodermata; Asteroidea). Mar. Biol. (Berl.) 158: 639-648.
    Brandsma, J. (2011). The origin and fate of intact polar lipids in the marine environment. PhD Thesis. [S.n.]: [s.l.]. ISBN 978-90-6266-286-9. 1-223 pp.
    Brandsma, J.; van de Vossenberg, J.; Risgaard-Petersen, N.; Schmid, M.C.; Engstrom, P.; Eurenius, K.; Hulth, S.; Jaeschke, A.; Abbas, B.; Hopmans, E.C.; Strous, M.; Schouten, S.; Jetten, M.S.M.; Sinninghe Damsté, J.S. (2011). A multi-proxy study of anaerobic ammonium oxidation in marine sediments of the Gullmar Fjord, Sweden. Environmental Microbiology Reports 3(3): 360-366.
    Caley, T.; Kim, J.H.; Malaize, B.; Giraudeau, J.; Laepple, T.; Caillon, N.; Charlier, K.; Rebaubier, H.; Rossignol, L.; Castañeda, I.S; Schouten, S.; Sinninghe Damsté, J.S. (2011). High-latitude obliquity as a dominant forcing in the Agulhas current system. Clim. Past 7(4): 1285-1296.
    Castañeda, I.S; Schouten, S. (2011). A review of molecular organic proxies for examining modern and ancient lacustrine environments. Quat. Sci. Rev. 30(21-22): 2851-2891.
    de Corte, D.; Sintes, E.; Yokokawa, T.; Herndl, G.J.; de Corte, D. (2011). Changes in viral and bacterial communities during the ice-melting season in the coastal Arctic (Kongsfjorden, Ny-Ålesund). Environ. Microbiol. 13(7): 1827-1841.
    Dupont, L.M.; Caley, T.; Kim, J.H.; Castañeda, I.S; Malaize, B.; Giraudeau, J. (2011). Glacial-interglacial vegetation dynamics in South Eastern Africa coupled to sea surface temperature variations in the Western Indian Ocean. Clim. Past 7(4): 1209-1224.
    Evans, C.; Thomson, P.G.; Davidson, A.T.; Bowie, A.R.; van den Enden, R.; Witte, H.; Brussaard, C.P.D. (2011). Potential climate change impacts on microbial distribution and carbon cycling in the Australian Southern Ocean. Deep-Sea Res., Part 2, Top. Stud. Oceanogr. 58(21-22): 2150-2161.
    Fawcett, P.J.; Werne, J.P.; Anderson, R.S.; Heikoop, J.M.; Brown, E.T.; Berke, M.A.; Smith, S.J.; Goff, F.; Donohoo-Hurley, L.; Cisneros-Dozal, L.M.; Schouten, S.; Sinninghe Damsté, J.S.; Huang, Y.S.; Toney, J.; Fessenden, J.; WoldeGabriel, G.; Atudorei, V.; Geissman, J.W.; Allen, C.D. (2011). Extended megadroughts in the southwestern United States during Pleistocene interglacials. Nature (Lond.) 470(7335): 518-521.
    Gazeau, F.; Gattuso, J.P.; Greaves, M.; Elderfield, H.; Peene, J.; Heip, C.H.R.; Middelburg, J.J. (2011). Effect of Carbonate Chemistry Alteration on the Early Embryonic Development of the Pacific Oyster (Crassostrea gigas). PLoS One 6(8): e23010; 1-8.
    Hassler, C.S.; Schoemann, V.; Nichols, C.M.; Butler, E.C.V.; Boyd, P.W.; Nichols, C.M. (2011). Saccharides enhance iron bioavailability to Southern Ocean phytoplankton. Proc. Natl. Acad. Sci. U.S.A. 108(3): 1076-1081.
    Hu, B.L.; Rush, D.; van der Biezen, E.; Zheng, P.; van Mullekom, M.; Schouten, S.; Sinninghe Damsté, J.S.; Smolders, A.J.P.; Jetten, M.S.M.; Kartal, B. (2011). New Anaerobic, Ammonium-Oxidizing Community Enriched from Peat Soil. Appl. Environ. Microbiol. 77(3): 966-971.
    Huguet, C.; Martrat, B.; Grimalt, J.O.; Sinninghe Damsté, J.S.; Schouten, S. (2011). Coherent millennial-scale patterns in U37k' and TEX86H temperature records during the penultimate interglacial-to-glacial cycle in the western Mediterranean. Paleoceanography 26.
    Jung, M.Y.; Park, S.J.; Min, D.; Kim, J.S.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Kim, G.J.; Madsen, E.L.; Rhee, S.K. (2011). Enrichment and Characterization of an Autotrophic Ammonia-Oxidizing Archaeon of Mesophilic Crenarchaeal Group I.1a from an Agricultural Soil. Appl. Environ. Microbiol. 77(24): 8635-8647.
    Kaserzon, S.L.; Kennedy, K.; Hawker, D.W.; Holling, N.; Escher, B.I.; Booij, K.; Mueller, J.F. (2011). Development and calibration of a passive sampler for N-nitrosodimethylamine (NDMA) in water. Chemosphere 84(4): 497-503.
    Kaur, G.; Mountain, B.W.; Hopmans, E.C.; Pancost, R.D. (2011). Preservation of Microbial Lipids in Geothermal Sinters. Astrobiol. 11(3): 259-274.
    Kaur, G.; Mountain, B.W.; Hopmans, E.C.; Pancost, R.D. (2011). Relationship between lipid distribution and geochemical environment within Champagne Pool, Waiotapu, New Zealand. Org. Geochem. 42(10): 1203-1215.
    Kim, J.-H.; Peterse, F.; Willmott, V.; Klitgaard Kristensen, D.; Baas, M.; Schouten, S.; Sinninghe Damsté, J.S. (2011). Large ancient organic matter contributions to Arctic marine sediments (Svalbard). Limnol. Oceanogr. 56(4): 1463-1474.
    Kim, J.H.; Talbot, H.M.; Zarzycka, B.; Bauersachs, T.; Wagner, T. (2011). Occurrence and abundance of soil-specific bacterial membrane lipid markers in the Têt watershed (southern France): Soil-specific BHPs and branched GDGTs. Geochem. Geophys. Geosyst. 12.
    Kip, N.; Ouyang, W.J.; van Winden, J.; Raghoebarsing, A.; van Niftrik, L.; Pol, A.; Pan, Y.; Bodrossy, L.; van Donselaar, E.G.; Reichart, G.J.; Jetten, M.S.M.; Sinninghe Damsté, J.S.; Op den Camp, H.J.M. (2011). Detection, Isolation, and Characterization of Acidophilic Methanotrophs from Sphagnum Mosses. Appl. Environ. Microbiol. 77(16): 5643-5654.
    Klánová, J.; Diamond, M.; Jones, K.C.; Lammel, G.; Lohmann, R.; Pironne, N.; Scheringer, M.; Balducci, C.; Booij, K. (2011). Identifying the Research and Infrastructure Needs for the Global Assessment of Hazardous Chemicals Ten Years after Establishing the Stockholm Convention. Environ. Sci. Technol. 45: 7617–7619.
    Kulk, G.; van de Poll, W.H.; Visser, R.J.W.; Buma, A.G.J. (2011). Distinct differences in photoacclimation potential between prokaryotic and eukaryotic oceanic phytoplankton. J. Exp. Mar. Biol. Ecol. 398(1-2): 63-72.
    Lannuzel, D.; Bowie, A.R.; van der Merwe, P.C.; Townsend, A.T.; Schoemann, V. (2011). Distribution of dissolved and particulate metals in Antarctic sea ice. Mar. Chem. 124(1-4): 134-146.
    Llabres, M.; Agustí, S.; Herndl, G.J. (2011). Diel in situ picophytoplankton cell death cycles coupled with cell division. J. Phycol. 47(6): 1247-1257.
    Loomis, S.E.; Russell, J.M.; Sinninghe Damsté, J.S. (2011). Distributions of branched GDGTs in soils and lake sediments from western Uganda: Implications for a lacustrine paleothermometer. Org. Geochem. 42(7): 739-751.
    Luttikhuizen, P.C.; Bol, A.; Witte, H.; van Bleijswijk, J.; Haddrath, O.; Baker, A.J.; Piersma, T.; Reneerkens, J.; Piersma, T. (2011). Novel and cross-species microsatellite markers for parentage analysis in Sanderling Calidris alba. J. Ornithol. 152(3): 807-810.
    Maier, C.; de Kluijver, A.; Agis, M.; Brussaard, C.P.D.; van Duyl, F.C.; Weinbauer, M.G. (2011). Dynamics of nutrients, total organic carbon, prokaryotes and viruses in onboard incubations of cold-water corals. Biogeosciences 8(9): 2609-2620.
    Masquelier, S.; Foulon, E.; Jouenne, F.; Ferréol, M.; Brussaard, C.P.D.; Vaulot, D. (2011). Distribution of eukaryotic plankton in the English Channel and the North Sea in summer. J. Sea Res. 66(2): 111-122.
    Moodley, L.; Nigam, R.; Ingole, B.; Babu, C.P.; Panchang, R.; Nanajkar, M.; Sivadas, S.; van Breugel, P.; van Ijzerloo, L.; Rutgers, R.; Heip, C.H.R.; Middelburg, J.J. (2011). Oxygen minimum seafloor ecological (mal) functioning. J. Exp. Mar. Biol. Ecol. 398(1-2): 91-100.
    Morgan-Smith, D.; Herndl, G.J.; van Aken, H.M.; Bochdansky, A.B. (2011). Abundance of eukaryotic microbes in the deep subtropical North Atlantic. Aquat. Microb. Ecol. 65(2): 103-115.
    Mußmann, M; Brito, I.; Pitcher, A.; Sinninghe Damste, J.S.; Hatzenpichler, R.; Richter, A.; Nielsen, J.L.; Nielsen, P.H.; Daims, H.; Müller, A.; Wagner, M.; Head, I.M. (2011). Thaumarchaeotes abundant in refinery nitrifying sludges express amoA but are not obligate autotrophic ammonia oxidizers. Proc. Natl. Acad. Sci. U.S.A. 108(40): 16771-16776.
    Nierop, K.G.J.; Speelman, E.N.; de Leeuw, J.W.; Reichart, G.J. (2011). The omnipresent water fern Azolla caroliniana does not contain lignin. Org. Geochem. 42(7): 846-850.
    O'Brien, D.S.; Booij, K.; Hawker, D.W.; Mueller, J.F. (2011). Method for the in Situ Calibration of a Passive Phosphate Sampler in Estuarine and Marine Waters. Environ. Sci. Technol. 45(7): 2871-2877.
    Peperzak, L.; Brussaard, C.P.D. (2011). Flow Cytometric Applicability of Fluorescent Vitality Probes on Phytoplankton. J. Phycol. 47(3): 692-702.
    Peterse, F. (2011). Environmental controls on the distribution of bacterial tetraether membrane lipids: Constraints on the MBT-CBT paleothermometer. PhD Thesis. [S.n.]: [s.l.]. ISBN 978-90-8570-839-1. 1-143 pp.
    Peterse, F.; Hopmans, E.C.; Schouten, S.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S. (2011). Identification and distribution of intact polar branched tetraether lipids in peat and soil. Org. Geochem. 42(9): 1007-1015.
    Peterse, F.; Prins, M.A.; Beets, C.J.; Troelstra, S.R.; Zheng, H.B.; Gu, Z.Y.; Schouten, S.; Sinninghe Damsté, J.S. (2011). Decoupled warming and monsoon precipitation in East Asia over the last deglaciation. Earth Planet. Sci. Lett. 301(1-2): 256-264.
    Pitcher, A. (2011). Intact polar lipids of ammonia-oxidizing Archaea: Structural diversity anapplication inmolecular ecology. Geologica ultraiectina, mededelingen van de faculteit aardwetenschappen, 337. PhD Thesis. [S.n.]: [s.l.]. ISBN 978-90-5744-198-1. 1-227 pp.
    Pitcher, A.; Hopmans, E.C.; Mosier, A.C.; Park, S.J.; Rhee, S.K.; Francis, C.A.; Schouten, S. (2011). Core and Intact Polar Glycerol Dibiphytanyl Glycerol Tetraether Lipids of Ammonia-Oxidizing Archaea Enriched from Marine and Estuarine Sediments. Appl. Environ. Microbiol. 77(10): 3468-3477.
    Pitcher, A.; Villanueva, L.; Hopmans, E.C.; Schouten, S.; Reichart, G.J.; Sinninghe Damsté, J.S. (2011). Niche segregation of ammonia-oxidizing archaea and anammox bacteria in the Arabian Sea oxygen minimum zone. ISME J. 5(12): 1896-1904.
    Pitcher, A.; Wuchter, C.; Siedenberg, K.; Schouten, S.; Sinninghe Damsté, J.S. (2011). Crenarchaeol tracks winter blooms of ammonia-oxidizing Thaumarchaeota in the coastal North Sea. Limnol. Oceanogr. 56(6): 2308-2318.
    Powers, L.A.; Johnson, T.C.; Werne, J.P.; Castañeda, I.S.; Hopmans, E.C.; Sinninghe Damsté, J.S.; Schouten, S. (2011). Organic geochemical records of environmental variability in Lake Malawi during the last 700 years, Part I: The TEX86 temperature record. Palaeogeogr. Palaeoclimatol. Palaeoecol. 303(1-4): 133-139.
    Rampen, S.W.; Schouten, S.; Sinninghe Damsté, J.S. (2011). Occurrence of long chain 1,14-diols in Apedinella radians. Org. Geochem. 42(5): 572-574.
    Ruhl, M.; Bonis, N.R.; Reichart, G.J.; Sinninghe Damsté, J.S.; Kürschner, W.M. (2011). Atmospheric Carbon Injection Linked to End-Triassic Mass Extinction. Science (Wash.) 333(6041): 430-434.
    Rush, D.; Jaeschke, A.; Hopmans, E.C.; Geenevasen, J.A.J.; Schouten, S.; Sinninghe Damsté, J.S. (2011). Short chain ladderanes: Oxic biodegradation products of anammox lipids. Geochim. Cosmochim. Acta 75(6): 1662-1671.
    Santos, S.; Luttikhuizen, P.C.; Campos, J.; Heip, C.H.R.; van der Veer, H.W. (2011). Spatial distribution patterns of the peppery furrow shell Scrobicularia plana (da Costa, 1778) along the European coast: A review. J. Sea Res. 66(3): 238-247.
    Schoon, P.L.; Sluijs, A.; Sinninghe Damsté, J.S.; Schouten, S. (2011). Stable carbon isotope patterns of marine biomarker lipids in the Arctic Ocean during Eocene Thermal Maximum 2. Paleoceanography 26.
    Sinninghe Damsté, J.S.; Rijpstra, W.I.C.; Hopmans, E.C.; Weijers, J.W.; Foesel, B.U.; Overmann, J.; Dedysh, S.N. (2011). 13,16-Dimethyl Octacosanedioic Acid (iso-Diabolic Acid), a Common Membrane-Spanning Lipid of Acidobacteria Subdivisions 1 and 3. Appl. Environ. Microbiol. 77(12): 4147-4154.
    Sinninghe Damsté, J.S.; Verschuren, D.; Ossebaar, J.; Blokker, J.; van Houten, R.; Plessen, B.; Schouten, S. (2011). A 25,000-year record of climate-induced changes in lowland vegetation of eastern equatorial Africa revealed by the stable carbon-isotopic composition of fossil plant leaf waxes. Earth Planet. Sci. Lett. 302(1-2): 236-246.
    Sluijs, A.; Bijl, P.K.; Schouten, S.; Röhl, U.; Reichart, G.-J.; Brinkhuis, H. (2011). Southern Ocean warming, sea level and hydrological change during the Paleocene-Eocene thermal maximum. Clim. Past 7(1): 47-61.
    Tierney, J.; Russell, J.M.; Sinninghe Damsté, J.S.; Huang, Y.S.; Verschuren, D. (2011). Late Quaternary behavior of the East African monsoon and the importance of the Congo Air Boundary. Quat. Sci. Rev. 30(7-8): 798-807.
    Trommer, G.; Siccha, M.; Rohling, E.J.; Grant, K.; van der Meer, M.T.J.; Schouten, S.; Baranowski, U.; Kucera, M. (2011). Sensitivity of Red Sea circulation to sea level and insolation forcing during the last interglacial. Clim. Past 7(3): 941-955.
    van de Poll, W.H.V.; Lagunas, M.; de Vries, T.; Buma, A.; Visser, R.J.W. (2011). Non-photochemical quenching of chlorophyll fluorescence and xanthophyll cycle responses after excess PAR and UVR in Chaetoceros brevis, Phaeocystis Antarctica and coastal Antarctic phytoplankton. Mar. Ecol. Prog. Ser. 426: 119-131.
    van Duyl, F.C.; Moodley, L.; Nieuwland, G.; van Ijzerloo, L.; van Soest, R.W.M.; Houtekamer, M.; Meesters, E.H.; Middelburg, J.J. (2011). Coral cavity sponges depend on reef-derived food resources: stable isotope and fatty acid constraints. Mar. Biol. (Berl.) 158(7): 1653-1666.
    van Geel, B.; Gelorini, V.; Lyaruu, A.; Aptroot, A.; Rucina, S.; Marchant, R.; Sinninghe Damsté, J.S.; Verschuren, D. (2011). Diversity and ecology of tropical African fungal spores from a 25,000-year palaeoenvironmental record in southeastern Kenya. Rev. Palaeobot. Palynol. 164(3-4): 174-190.
    Varela, M.M.; van Aken, H.M.; Sintes, E.; Reinthaler, T.; Herndl, G.J. (2011). Contribution of Crenarchaeota and Bacteria to autotrophy in the North Atlantic interior. Environ. Microbiol. 13(6): 1524-1533.
    Weijers, J.W.H.; Bernhardt, B.; Peterse, F.; Werne, J.P.; Dungait, J.A.J.; Schouten, S.; Sinninge Damsté, J.S. (2011). Absence of seasonal patterns in MBT-CBT indices in mid-latitude soils. Geochim. Cosmochim. Acta 75(11): 3179-3190.
    Weijers, J.W.H.; Lim, K.L.H.; Aquilina, A.; Sinninghe Damsté, J.S.; Pancost, R.D. (2011). Biogeochemical controls on glycerol dialkyl glycerol tetraether lipid distributions in sediments characterized by diffusive methane flux. Geochem. Geophys. Geosyst. 12.
    Weijers, J.W.H.; Steinmann, P.; Hopmans, E.C.; Schouten, S.; Sinninghe Damsté, J.S. (2011). Bacterial tetraether membrane lipids in peat and coal: Testing the MBT-CBT temperature proxy for climate reconstruction. Org. Geochem. 42(5): 477-486.
    Wolff, C.; Haug, G.H.; Timmermann, A.; Brauer, A.; Sigman, D.M.; Cane, M.A.; Verschuren, D.; Sinninghe Damsté, J.S. (2011). Reduced Interannual Rainfall Variability in East Africa During the Last Ice Age. Science (Wash.) 333(6043): 743-747.
    Woltering, M.; Johnson, T.C.; Werne, J.P.; Schouten, S.; Sinninghe Damsté, J.S. (2011). Late Pleistocene temperature history of Southeast Africa: A TEX86 temperature record from Lake Malawi. Palaeogeogr. Palaeoclimatol. Palaeoecol. 303(1-4): 93-102.

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