- Bioinformatic pipeline automation
- Bioinformatic support
- Taxonomic and genomic sequence database maintenance
- Programming languages: Java, C/C++, R, Python. Databases SQL and NoSQL
- Software development
Alejandro Abdala Asbun
NIOZ publications
-
2021
Amaral-Zettler, L.A.; Ballerini, T.; Zettler, E.R.; Abdala Asbun, A.; Adame, A.; Casotti, R.; Dumontet, B.; Donnarumma, V.; Engelmann, J.C.; Frère, L.; Mansui, J.; Philippon, M.; Pietrelli, L.; Sighicelli, M. (2021). Diversity and predicted inter- and intra-domain interactions in the Mediterranean Plastisphere. Environ. Pollut. 286: 117439. https://dx.doi.org/10.1016/j.envpol.2021.117439Vaksmaa, A.; Knittel, K.; Abdala Asbun, A.; Goudriaan, M.; Ellrott, A.; Witte, H.J.; Vollmer, I.; Meirer, F.; Lott, C.; Weber, M.; Engelmann, J.C.; Niemann, H. (2021). Microbial communities on plastic polymers in the Mediterranean Sea. Front. Microbiol. 12: 673553. https://dx.doi.org/10.3389/fmicb.2021.673553
-
2020
Abdala Asbun, A.; Besseling, M.A.; Balzano, S.; van Bleijswijk, J.D.L.; Witte, H.J.; Villanueva, L.; Engelmann, J.C. (2020). Cascabel: A scalable and versatile amplicon sequence data analysis pipeline delivering reproducible and documented results. Frontiers in Genetics 11: 489357. https://doi.org/10.3389/fgene.2020.489357van Grinsven, S.; Sinninghe Damsté, J.S; Abdala Asbun, A.; Engelmann, J.C.; Harrison, J.; Villanueva, L. (2020). Methane oxidation in anoxic lake water stimulated by nitrate and sulfate addition. Environ. Microbiol. 22(2): 766-782. https://dx.doi.org/10.1111/1462-2920.14886
