Royal Netherlands Institute for Sea Research

Microbial lipids: Exploring the natural variability of an unique set of cell constituents

Enygmatic 'lipid divide'

Tremendous progress has been made in the last decade in the genetic characterization of microorganisms, both in culture and in the environment. However, our knowledge of microbial membrane lipids, essential building blocks of the cell, has only marginally improved. This is remarkable since there exists a dichotomy in the distribution of lipids between the three Domains of Life. Diacyl glycerols based on straight-chain fatty acids are produced by bacteria and eukaryotes, whereas archaea synthesize isoprenoidal glycerol ether lipids. From a microbial evolutionary perspectives, this ‘lipid divide’ is enigmatic since it has recently become clear that eukaryotes evolved from the archaea.

Advanced techniques for a leap in knowledge

Preliminary results of our research group show that when novel analytical methodology is used, there is a large hidden diversity in microbial lipid composition that may resolve this fundamental question. We now systematically characterize prokaryotic intact polar lipids (IPLs) with state-of-the-art analytical techniques based on liquid chromatography and high-resolution mass spectrometry to bring our knowledge of microbial lipids to the next level. To this end, we characterize (i) 250+ bacterial and archaeal cultures and (ii) 200+ environmental samples for IPLs by HPLC-MS, complemented by full identification of fatty acids and other lipids released after acid hydrolysis of total cells. This approach is complemented by the characterisation of functional genes for lipid biosynthesis. This involves both mapping of known genes, based on the analysis of published whole (meta)genome data, as well as the identification of as yet unknown genes in selected groups of prokaryotes. The results should make a fundamental contribution to (i) our understanding of the evolution of biosynthesis of membrane lipids, (ii) their application as microbial markers in the environment, and (iii) in the development and application of organic proxies in earth sciences.

Project information
Linked department:
Funder:
European Community - European…
Duration:
1 Sep 2016 - 30 Sep 2021

Meet the team

 
Sinninghe Damsté, Jaap
Head of Scientific Department
 
Villanueva, Laura
Senior Scientist
 
Boschman, Christine
PhD student
 
Perez Gallego, Ruth
PhD student

Linked projects

Microbial lipids: Exploring the natural variability of an unique set of cell constituents
Funder
Netherlands Organization for Scientific Research
Project duration
1 Jan 2017 - 31 Jan 2020

Linked publications