Irene Rijpstra

Senior research assistant
Phone number
+31 (0)222 369 525
Location
Texel
Function
Senior research assistant

Linked publications

  • 2017
    Kulichevskaya, I.S.; Ivanova, A.; Baulina, O.I.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Dedysh, S.N. (2017). Fimbriiglobus ruber gen. nov., sp. nov., a Gemmata-like planctomycete from Sphagnum peat bog and the proposal of Gemmataceae fam. nov. Int. J. Syst. Evol. Microbiol. 67: 218–224. https//:dx.doi.org/10.1099/ijsem.0.001598
  • 2016
    Jung, M.Y.; Kim, J.G.; Sinninghe Damsté, J.S.; Rijpstra, W.I.C.; Madsen, E.L.; Kim, S.J.; Hong, H.; Si, O.-J.; Kerou, M.; Schleper, C.; Rhee, S.K. (2016). A hydrophobic ammonia-oxidizing archaeon of the Nitrosocosmicus clade isolated from coal tar-contaminated sediment. Environmental Microbiology Reports 8(6): 983–992. dx.doi.org/10.1111/1758-2229.12477
    Kim, J.G.; Park, S.J.; Sinninghe Damsté, J.S.; Schouten, S.; Rijpstra, W.I.C.; Jung, M.Y.; Kim, S.J.; Gwak, J.-H.; Hong, H.; Si, O.-J.; Lee, S.H.; Madsen, E.L.; Rhee, S.K. (2016). Hydrogen peroxide detoxification is a key mechanism for growth of ammonia-oxidizing archaea. Proc. Natl. Acad. Sci. U.S.A. 113(28): 7888–7893. dx.doi.org/10.1073/pnas.1605501113
    Kulichevskaya, I.S.; Ivanova, A.; Suzina, N.E.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Dedysh, S.N. (2016). Paludisphaera borealis gen. nov., sp. nov., a hydrolytic planctomycete from northern wetlands, and proposal of Isosphaeraceae fam. nov. Int. J. Syst. Evol. Microbiol. 66: 837-844. dx.doi.org/ 10.1099/ijsem.0.000799
    Moore, E.K.; Hopmans, E.C.; Rijpstra, W.I.C.; Villanueva, L.; Sinninghe Damsté, J.S. (2016). Elucidation and identification of amino acid containing membrane lipids using liquid chromatography/high-resolution mass spectrometry. Rapid Comm. Mass Spectrom. 30(6): 739–750. dx.doi.org/10.1002/rcm.7503
    Oshkin, I.Y.; Belova, S.E.; Danilova, O.V.; Miroshnikov, K.K.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Liesack, W.; Dedysh, S.N. (2016). Methylovulum psychrotolerans sp. nov., a cold-adapted methanotroph from low-temperature terrestrial environments and emended description of the genus Methylovulum. Int. J. Syst. Evol. Microbiol. 66: 2417-2423. dx.doi.org/ 10.1099/ijsem.0.001046
    Sorokin, D.Y.; Kublanov, I.V.; Yakimov, M.M.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S. (2016). Halanaeroarchaeum sulfurireducens gen. nov., sp. nov., the first obligately anaerobic sulfur-respiring haloarchaeon, isolated from a hypersaline lake. Int. J. Syst. Evol. Microbiol. 66(6): 2377-2381. dx.doi.org/10.1099/ijsem.0.001041
    van Bree, L.G.J.; Rijpstra, W.I.C.; Al-Dhabi, N.A.; Verschuren, D.; Sinninghe Damsté, J.S.; de Leeuw, J.W. (2016). Des-A-lupane in an East African lake sedimentary record as a new proxy for the stable carbon isotopic composition of C3 plants. Org. Geochem. 101: 132–139. dx.doi.org/10.1016/j.orggeochem.2016.09.003
  • 2015
    Kulichevskaya, I.S.; Ivanova, A.; Detkova, E.N.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Dedysh, S.N. (2015). Planctomicrobium piriforme gen. nov., sp. nov., a stalked planctomycete from a littoral wetland of a boreal lake. Int. J. Syst. Evol. Microbiol. 65(5): 1659-1665. dx.doi.org/10.1099/ijs.0.000154
    Moore, E.K.; Hopmans, E.C.; Rijpstra, W.I.C.; Sánchez-Andrea, I.; Villanueva, L.; Wienk, H.; Schoutsen, F; Stams, A.J.M.; Sinninghe Damsté, J.S. (2015). Lysine and novel hydroxylysine lipids in soil bacteria: amino acid membrane lipid response to temperature and pH in Pseudopedobacter saltans. Front. Microbiol. 6: 637. dx.doi.org/10.3389/fmicb.2015.00637
    Moore, E.K.; Villanueva, L.; Hopmans, E.C.; Rijpstra, W.I.C.; Mets, A.; Dedysh, S.N.; Sinninghe Damsté, J.S. (2015). Abundant Trimethylornithine Lipids and Specific Gene Sequences Are Indicative of Planctomycete Importance at the Oxic/Anoxic Interface in Sphagnum-Dominated Northern Wetlands. Appl. Environ. Microbiol. 81(18): 6333-6344. dx.doi.org/10.1128/AEM.00324-15
    Quemin, E.R. J.; Pietilä, M.K.; Oksanen, H.M.; Forterre, P.; Rijpstra, W.I.C.; Schouten, S.; Bamford, D,H,; Prangishvili, D.; Krupovica, M. (2015). Sulfolobus Spindle-Shaped Virus 1 Contains Glycosylated Capsid Proteins, a Cellular Chromatin Protein, and Host-Derived Lipids. J. Virol. 89(22): 11681-11691. dx.doi.org/10.1128/JVI.02270-15
    Sorokin, D.Y.; Abbas, B.; Merkel, A.Y; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Sukhacheva, M.V; van Loosdrecht, M.C.M. (2015). Methanosalsum natronophilum sp. nov., and Methanocalculus alkaliphilus sp. nov., haloalkaliphilic methanogens from hypersaline soda lakes. Int. J. Syst. Evol. Microbiol. 65: 3739-3745. dx.doi.org/10.1099/ijsem.0.000488
    Weber, Y.; De Jonge, C.; Rijpstra, W.I.C.; Hopmans, E.C.; Stadnitskaia, A.; Schubert, C.J.; Lehmann, M.F.; Sinninghe Damsté, J.S.; Niemann, H. (2015). Identification and carbon isotope composition of a novel branched GDGT isomer in lake sediments: Evidence for lacustrine branched GDGT production. Geochim. Cosmochim. Acta 154: 118-129. dx.doi.org/10.1016/j.gca.2015.01.032
  • 2014
    Crowe, M.A.; Power, J.F.; Morgan, X.C.; Dunfield, P.F.; Lagutin, K.; Rijpstra, W.I.C.; Vyssotski, M.; Sinninghe Damsté, J.S.; Houghton, K.M.; Ryan, J.L.J.; Stott, M.B. (2014). Pyrinomonas methylaliphatogenes gen. nov., sp. nov., a novel group 4 thermophilic member of the phylum Acidobacteria from geothermal soils. Int. J. Syst. Evol. Microbiol. 64: 220-227. hdl.handle.net/10.1099/ijs.0.055079-0
    Kulichevskaya, I.S.; Suzina, N.E.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Dedysh, S.N. (2014). Paludibaculum fermentans gen. nov., sp. nov., a facultative anaerobe capable of dissimilatory iron reduction from subdivision 3 Acidobacteria. Int. J. Syst. Evol. Microbiol. 64: 2857-2864. hdl.handle.net/10.1099/ijs.0.066175-0
    Neumann, S.; Wessels, H.J.C.T.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Kartal, B.; Jetten, M.S.M.; van Niftrik, L. (2014). Isolation and characterization of a prokaryotic cell organelle from the anammox bacterium Kuenenia stuttgartiensis. Mol. Microbiol. 94(4): 794-802. dx.doi.org/10.1111/mmi.12816
    Sinninghe Damsté, J.S.; Rijpstra, W.I.C.; Hopmans, E.C.; Foesel, B.U.; Wüst, P.K.; Overmann, J.; Tank, M.; Bryant, D.A.; Dunfield, P.F.; Houghton, K.; Stott, M. (2014). Ether- and Ester-Bound iso-Diabolic Acid and Other Lipids in Members of Acidobacteria Subdivision 4. Appl. Environ. Microbiol. 80(17): 5207-5218. hdl.handle.net/10.1128/AEM.01066-14
    Sorokin, D.Y.; Vejmelkova, D.; Lücker, S.; Streshinskaya, G.M.; Rijpstra, W.I.C.; Sinninghe Damsté, J.; Kleerbezem, R.; van Loosdrecht, M.C.M.; Muyzer, G.; Daims, H. (2014). Nitrolancea hollandica gen. nov., sp. nov., a chemolithoautotrophic nitrite-oxidizing bacterium isolated from a bioreactor belonging to the phylum Chloroflexi. Int. J. Syst. Evol. Microbiol. 64(6): 1859-1865. hdl.handle.net/10.1099/ijs.0.062232-0
    van Bree, L.G.J.; Rijpstra, W.I.C.; Cocquyt, C.; Al-Dhabi, N.-A.; Verschuren, D.; Sinninghe Damsté, J.S.; de Leeuw, J.W. (2014). Origin and palaeoenvironmental significance of C25 and C27n-alk-1-enes in a 25,000-year lake-sedimentary record from equatorial East Africa. Geochim. Cosmochim. Acta 145: 89–102. dx.doi.org/10.1016/j.gca.2014.08.035
    van Gelder, A.H.; Sousa, D.Z.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Stams, A.J.M.; Sánchez-Andrea, I. (2014). Ercella succinigenes gen. nov., sp. nov., ananaerobic succinate-producing bacterium. Int. J. Syst. Evol. Microbiol. 64(7): 2449-2454. dx.doi.org/10.1099/ijs.0.058966-0
    Villanueva, L.; Rijpstra, W.I.C.; Schouten, S.; Sinninghe Damsté, J.S. (2014). Genetic biomarkers of the sterol-biosynthetic pathway in microalgae. Environmental Microbiology Reports 6(1): 35-44. dx.doi.org/10.1111/1758-2229.12106
  • 2013
    Boelen, P.; van Dijk, R.; Sinninghe Damsté, J.S.; Rijpstra, W.I.C.; Buma, A.G.J. (2013). On the potential application of polar and temperate marine microalgae for EPA and DHA production. AMB Express 3(26): 1-9. hdl.handle.net/10.1186/2191-0855-3-26
    De Jonge, C.; Hopmans, E.C.; Stadnitskaia, A.; Rijpstra, W.I.C.; Hofland, R.; Tegelaar, E.; Sinninghe Damsté, J.S. (2013). Identification of novel penta- and hexamethylated branched glycerol dialkyl glycerol tetraethers in peat using HPLC-MS2, GC-MS and GC-SMB-MS. Org. Geochem. 54: 78-82. dx.doi.org/10.1016/j.orggeochem.2012.10.004
    Kim, J.J.; Alkawally, M.; Brady, A.L.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Dunfield, P.F. (2013). Chryseolinea serpens gen. nov., sp. nov., a member of the phylum Bacteroidetes isolated from soil. Int. J. Syst. Evol. Microbiol. 63: 654-660. dx.doi.org/10.1099/ijs.0.039404-0
    Losey, N.A.; Stevenson, B.S.; Busse, H.-J.; Sinninghe Damsté, J.S.; Rijpstra, W.I.C.; Rudd, S.; Lawson, P.A. (2013). Thermoanaerobaculum aquaticum gen. nov., sp. nov., the first cultivated member of Acidobacteria subdivision 23, isolated from a hot spring. Int. J. Syst. Evol. Microbiol. 63: 4149-4157. hdl.handle.net/10.1099/ijs.0.051425-0
    Moore, E.K.; Hopmans, E.C.; Rijpstra, W.I.C.; Villanueva, L.; Dedysh, S.N.; Wienk, H.; Schoutsen, F; Sinninghe Damsté, J.S. (2013). Novel Mono-, Di-, and Trimethylornithine Membrane Lipids in Northern Wetland Planctomycetes. Appl. Environ. Microbiol. 79(22): 6874-6884. hdl.handle.net/10.1128/AEM.02169-13
  • 2012
    Dedysh, S.N.; Kulichevskaya, I.S.; Serkebaeva, Y.M.; Mityaeva, M.A.; Sorokin, V.V.; Suzina, N.E.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S. (2012). Bryocella elongata gen. nov., sp nov., a member of subdivision 1 of the Acidobacteria isolated from a methanotrophic enrichment culture, and emended description of Edaphobacter aggregans Koch et al. 2008. Int. J. Syst. Evol. Microbiol. 62: 654-664. dx.doi.org/10.1099/ijs.0.031898-0
    Garcia Costas, A.M.; Tsukatani, Y.; Rijpstra, W.I.C.; Schouten, S.; Welander, P.V.; Summons, R.E.; Bryant, D.A. (2012). Identification of the Bacteriochlorophylls, Carotenoids, Quinones, Lipids, and Hopanoids of "Candidatus Chloracidobacterium thermophilum". J. Bacteriol. 194(5): 1158-1168. dx.doi.org/10.1128/JB.06421-11
    Kim, J.G.; Jung, M.Y.; Park, S.J.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Madsen, E.L.; Min, D.; Kim, J.S.; Kim, G.J.; Rhee, S.K. (2012). Cultivation of a highly enriched ammonia-oxidizing archaeon of thaumarchaeotal group I.1b from an agricultural soil. Environ. Microbiol. 14(6): 1528-1543. dx.doi.org/10.1111/j.1462-2920.2012.02740.x
    Kool, D.M.; Zhu, B.L.; Rijpstra, W.I.C.; Jetten, M.S.M.; Ettwig, K.F.; Sinninghe Damsté, J.S. (2012). Rare Branched Fatty Acids Characterize the Lipid Composition of the Intra-Aerobic Methane Oxidizer "Candidatus Methylomirabilis oxyfera". Appl. Environ. Microbiol. 78(24): 8650-8656. dx.doi.org/10.1128/AEM.02099-12
    Kulichevskaya, I.S.; Detkova, E.N.; Bodelier, P.L.E.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Dedysh, S.N. (2012). Singulisphaera rosea sp nov., a planctomycete from acidic Sphagnum peat, and emended description of the genus Singulisphaera. Int. J. Syst. Evol. Microbiol. 62: 118-123. dx.doi.org/10.1099/ijs.0.025924-0
    Kulichevskaya, I.S.; Kostina, L.A.; Valáškova, V.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; de Boer, W.; Dedysh, S.N. (2012). Acidicapsa borealis gen. nov., sp. nov. and Acidicapsa ligni sp. nov., subdivision 1 Acidobacteria from Sphagnum peat and decaying wood. Int. J. Syst. Evol. Microbiol. 62: 1512-1520. dx.doi.org/10.1099/ijs.0.034819-0
    Kulichevskaya, I.S.; Serkebaeva, Y.M.; Kim, Y.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Liesack, W.; Dedysh, S.N. (2012). Telmatocola sphagniphila gen. nov., sp. nov., a Novel Dendriform Planctomycete from Northern Wetlands. Front. Microbiol. 3: 146; 1-9. hdl.handle.net/10.3389/fmicb.2012.00146
    Sinninghe Damsté, J.S.; Rijpstra, W.I.C.; Hopmans, E.C.; Jung, M.Y.; Kim, J.G.; Rhee, S.K.; Stieglmeier, M.; Schleper, C. (2012). Intact Polar and Core Glycerol Dibiphytanyl Glycerol Tetraether Lipids of Group I.1a and I.1b Thaumarchaeota in Soil. Appl. Environ. Microbiol. 78(19): 6866-6874. dx.doi.org/10.1128/AEM.01681-12
    Sorokin, D.Y.; Lücker, S.; Vejmelkova, D.; Kostrikina, N.A.; Kleerebezem, R.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Le Paslier, D.; Muyzer, G.; Wagner, M.; van Loosdrecht, M.C.M.; Daims, H. (2012). Nitrification expanded: discovery, physiology and genomics of a nitrite-oxidizing bacterium from the phylum Chloroflexi. ISME J. 6(12): 2245-2256. dx.doi.org/10.1038/ismej.2012.70
  • 2011
    Boere, A.C.; Rijpstra, W.I.C.; de Lange, G.J.; Malinverno, E.; Sinninghe Damsté, J.S.; Coolen, M.J.L.; Sinninghe Damsté, J.S.; Coolen, M.J.L. (2011). Exploring preserved fossil dinoflagellate and haptophyte DNA signatures to infer ecological and environmental changes during deposition of sapropel S1 in the eastern Mediterranean. Paleoceanography 26. dx.doi.org/10.1029/2010PA001948
    Boere, A.C.; Rijpstra, W.I.C.; de Lange, G.J.; Sinninghe Damsté, J.S.; Coolen, M.J.L.; Sinninghe Damsté, J.S.; Coolen, M.J.L. (2011). Preservation potential of ancient plankton DNA in Pleistocene marine sediments. Geobiol. 9(5): 377-393. dx.doi.org/10.1111/j.1472-4669.2011.00290.x
    Boere, A.C.; Sinninghe Damsté, J.S.; Rijpstra, W.I.C.; Volkman, J.K.; Coolen, M.J.L. (2011). Source-specific variability in post-depositional DNA preservation with potential implications for DNA based paleoecological records. Org. Geochem. 42(10): 1216-1225. dx.doi.org/10.1016/j.orggeochem.2011.08.005
    Jung, M.Y.; Park, S.J.; Min, D.; Kim, J.S.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Kim, G.J.; Madsen, E.L.; Rhee, S.K. (2011). Enrichment and Characterization of an Autotrophic Ammonia-Oxidizing Archaeon of Mesophilic Crenarchaeal Group I.1a from an Agricultural Soil. Appl. Environ. Microbiol. 77(24): 8635-8647. dx.doi.org/10.1128/AEM.05787-11
    Peterse, F.; Hopmans, E.C.; Schouten, S.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S. (2011). Identification and distribution of intact polar branched tetraether lipids in peat and soil. Org. Geochem. 42(9): 1007-1015. dx.doi.org/10.1016/j.orggeochem.2011.07.006