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Publicaties Ruimtelijke Ecologie

2012
  1. Biere, A., Van Andel, J. & Van de Koppel, J. (2012). Populations: ecology and genetics. In J van Andel & J Aronson (Eds.), Restoration Ecology: The New Frontier, 2nd edition (pp. 73-86). Wiley-Blackwell.
  2. Chown, S.L., Huiskes, A.H.L., Gremmen, N.J.M., Lee, J.E., Terauds, A., Crosbie, K., Frenot, Y., Hughes, K.A., Imura, S., Kiefer, K., Lebouvier, M., Raymond, B., Tsujimoto, M., Ware, C., van de Vijver, B. & Bergstrom, D.M. (2012). Continent-wide risk assessment for the establishment of nonindigenous species in Antarctica. Proceedings of the National Academy of Sciences of the United States of America, 109(13), 4938-4943.
  3. Christianen, M.J.A., Govers, L.L., Bouma, T.J., Kiswara, W., Roelofs, J.G.M., Lamers, L.P.M. & Van Katwijk, M. (2012). Marine megaherbivore grazing may increase seagrass tolerance to high nutrient loads. Journal of Ecology, 100(2), 546-560.
  4. De Jager, M., Weissing, F. J., Herman, P.M.J., Nolet, B.A. & Van de Koppel, J. (2012). Response to comment on "Levy walks evolve through interaction between movement and environmental complexity". Science, 335(6071), 918.
  5. Fagherazzi, S., Kirwan, M.L., Mudd, S.M., Guntenspergen, G.R., Temmerman, S., D'Alpaos, A., Van de Koppel, J., Rybczyk, J.M., Reyes, E., Craft, C. & Clough, J. (2012). Numerical models of salt marsch evolution: Ecological, geomorphic, and climatic factors. Reviews of Geophysics, 50, RG1002.
  6. Han, Q.Y., Bouma, T.J., Brun, F.G., Suykerbuyk, W. & Van Katwijk, M. (2012). Resilience of Zostera noltii to burial or erosion disturbances. Marine Ecology Progress Series, 449, 133-143.
  7. Liu, Q.X., Weerman, E.J., Herman, P.M.J., Olff, H. & Van de Koppel, J. (2012). Alternative mechanisms alter the emergent properties of self-organization in mussel beds. Proceedings of the Royal Society B-Biological Sciences, 279(1739), 2744-2753.
  8. Paul, M., Bouma, T.J. & Amos, C.L. (2012). Wave attenuation by submerged vegetation: combining the effect of organism traits and tidal current. Marine Ecology Progress Series, 444, 31-41.
  9. Shi, B.W., Yang, S.L., Wang, Y.P., Bouma, T.J. & Zhu, Q. (2012). Relating accretion and erosion at an exposed tidal wetland to the bottom shear stress of combined current-wave action. Geomorphology, 138(1), 380-389.
  10. Van de Koppel, J., Van Andel, J. & Biere, A. (2012). Ecology of ecosystems and biotic communities. In J Van Andel & J Aronson (Eds.), Restoration Ecology: The New Frontier, 2nd edition (pp. 59-72). Wiley- Blackwell.
  11. Van de Koppel, J., Bouma, T.J. & Herman, P.M.J. (2012). The influence of local-and landscape-scale processes on spatial self-organization in estuarine ecosystems. Journal of Experimental Biology, 215(6), 962-967.
  12. Van der Heide, T., Govers, L.L., De Fouw, J., Olff, H., Van der Geest, M., Van Katwijk, M.M., Piersma, T., Van de Koppel, J., Silliman, B.R., Smolders, A.J.P. & van Gils, J.A. (2012). A three-stage symbiosis forms the foundation of seagrass ecosystems. Science, 336(6087), 1432-1434.
  13. Van der Wal, D. & Herman, P.M.J. (2012). Ecosystem engineering effects of Aster tripolium and Salicornia procumbens saltmarsh on macrofaunal community structure. Estuaries and Coasts, 35(3), 714-726.
  14. Wang, R.H., Jin, Z., Liu, Q.X., Van de Koppel, J. & Alonso, D. (2012). A simple stochastic model with environmental transmission explains multi-year periodicity in outbreaks of avian flu. PLoS One, 7(2), e28873.
  15. Wang, R.H., Jin, Z. & Liu, Q.X. (2012). The evolutionary dynamics of a spatial multi-strain host-pathogen system with cross-immunity. Nonlinear Analysis: Hybrid Systems, 6(1), 741-753.
  16. Weerman, E.J., Van Belzen, J., Rietkerk, M., Temmerman, S., Kéfi, S., Herman, P.M.J. & Van de Koppel, J. (2012). Changes in diatom patch-size distribution and degradation in a spatially self-organized intertidal mudflat ecosystem. Ecology, 93(3), 608-618.
  17. Yang, S.L., Shi, B.W., Bouma, T.J., Ysebaert, T. & Luo, X.X. (2012). Wave attenuation at a salt marsh margin: A case study of an exposed coast on the Yangtze estuary. Estuaries and Coasts, 35(1), 169-182.
  18. Zhu, Z.C., Zhang, L.Q., Wang, N., Schwarz, C. & Ysebaert, T. (2012). Interactions between the range expansion of saltmarsh vegetation and hydrodynamic regimes in the Yangtze Estuary, China. Estuarine Coastal and Shelf Science, 96(1), 273-279
2011
  1. Alexandre, A., Silva, J., Bouma, T.J. & Santos, R. (2011). Inorganic nitrogen uptake kinetics and whole-plant nitrogen budget in the seagrass Zostera noltii. Journal of Experimental Marine Biology and Ecology, 401(1-2), 7-12.
  2. Baart, F., Bakker, M.A.J., Van Dongeren, A., Den Heijer, C., Van Heteren, S., Smit, M.W.J., Van Koningsveld, M. & Pool, A. (2011). Using 18th century storm-surge data from the Dutch Coast to improve the confidence in flood-risk estimates. Natural Hazards and Earth System Sciences, 11(10), 2791-2801.
  3. Backer, A. De, Coillie, F. Van, Montserrat, F., Provoost, P., Colen, C. van, Vincx, M. & Degraer, S. (2011). Bioturbation effects of Corophium volutator: Importance of density and behavioural activity. Estuarine Coastal and Shelf Science, 91(2), 306-313.
  4. Bal, K.D., Bouma, T.J., Buis, K., Struyf, E., Jonas, S., Backx, H. & Meire, P. (2011). Trade-off between drag reduction and light interception of macrophytes: comparing five aquatic plants with contrasting morphology. Functional Ecology, 25(6), 1197-1205. Balke, T., Bouma, T.J., Horstman, E.M., Webb, E.L., Erftemeijer, P.L.A. & Herman, P.M.J. (2011). Windows of opportunity: thresholds to mangrove seedling establishment on tidal flats. Marine Ecology Progress Series, 440, 1-9.
  5. Bokhorst, S., Huiskes, A.H.L., Convey, P., Sinclair, B.J., Lebouvier, M., van de Vijver, B. & Wall, D.H. (2011). Microclimate impacts of passive warming methods in Antarctica: implications for climate change studies. Polar Biology, 34(10), 1421-1435.
  6. Borsje, B.W., Van Wesenbeeck, B.K., Dekker, F., Paalvast, P, Bouma, T.J., Katwijk, M. van & Vries, M.B. De (2011). How ecological engineering can serve in coastal protection. Ecological Engineering, 37(2), 113-122.
  7. Christianen, M.J.A., Heide, T. Van der, Bouma, T.J., Roelofs, J.G.M., Katwijk, M. van & Lamers, L.P.M. (2011). Limited toxicity of NHx pulses on an early and late successional tropical seagrass species: Interactions with pH and light level. Aquatic Toxicology, 104(1-2), 73-79.
  8. De Jager, M., Weissing, F. J., Herman, P.M.J., Nolet, B.A. & Van de Koppel, J. (2011). Levy walks evolve through interaction between movement and environmental complexity. Science, 332(6037), 1551-1553.
  9. De Vriend, H.J., Wang, Z.B., Ysebaert, T., Herman, P.M.J. & Ding, P.X. (2011). Eco-morphological problems in the Yangtze Estuary and the Western Scheldt. Wetlands, 31(6), 1033-1042.
  10. Desmet, N.J.S., Van Belleghem, S., Seuntjens, P., Bouma, T.J., Buis, K. & Meire, P. (2011). Quantification of the impact of macrophytes on oxygen dynamics and nitrogen retention in a vegetated lowland river. Physics and Chemistry of the Earth, Parts A/B/C, 36(12), 479-489.
  11. Elix, J.A., Øvstedal, D.O. & Gremmen, N.J.M. (2011). A new species of Cresponea (Roccellaceae, Ascomycota) from Gough Island. Nova Hedwigia, 92(1-2), 133-136.
  12. Hendriks, I.E., Cabanellas-Reboredo, M., Bouma, T.J., Deudero, S. & Duarte, C.M. (2011). Seagrass meadows modify drag forces on the shell of the fan mussel, Pinna nobilis. Estuaries and Coasts, 34(1), 60-67.
  13. Hughes, K.A., Lee, J.E., Tsujimoto, M., Imura, S., Bergstrom, D.M., Ware, C., Lebouvier, M., Huiskes, A.H.L., Gremmen, N.J.M., Frenot, Y., Bridge, P.D. & Chown, S.L. (2011). Food for thought: risks of non-native species transfer to Antarctica with fresh produce. Biological Conservation, 144(5), 1682-1689.
  14. Montserrat, F., Suykerbuyk, W., Al-Busaidi, R., Bouma, T.J., Van der Wal, D. & Herman, P.M.J. (2011). Effects of mud sedimentation on lugworm ecosystem engineering. Journal of Sea Research, 65(1), 170-181.
  15. Prooijen, B.C. van, Montserrat, F. & Herman, P.M.J. (2011). A process-basedmodelforerosionof Macoma balthica-affectedmudbeds. Continental Shelf Research, 31(6), 527-538.
  16. Puijalon, S., Bouma, T.J., Douady, C., Van Groenendael, J., Anten, N.P.R., Martel, E. & Bornette, G. (2011). Plant resistance to mechanical stress: evidence of an avoidance-tolerance trade-off. New Phytologist, 191(4), 1141-1149.
  17. Schwarz, C., Ysebaert, T., Zhu, Z.C., Zhang, L.Q., Bouma, T.J. & Herman, P.M.J. (2011). Abiotic factors governing the establishment and expansion of two salt marsh plants in the Yangtze Estuary, China. Wetlands, 31(6), 1011-1021.
  18. Van de Koppel, J., Gupta, R. & Vuik, C. (2011). Scaling-up spatially-explicit ecological models using graphics processors. Ecological Modelling, 222(17), 3011-3019.
  19. Van der Wal, D., Forster, R.M., Rossi, F., Hummel, H., Ysebaert, T., Roose, F. & Herman, P.M.J. (2011). Ecological evaluation of an experimental beneficial use scheme for dredged sediment disposal in shallow tidal waters. Marine Pollution Bulletin, 62(1), 99-108.
  20. Van Engeland, T., Bouma, T.J., Morris, E.P., Brun Murillo, F.G., Peralta, G., Lara, M., Hendriks, I.E., Soetaert, K.E.R. & Middelburg, J.J. (2011). Potential uptake of dissolved organic matter by seagrasses and macroalgae. Marine Ecology Progress Series, 427, 71-81.
  21. Van Engeland, T., Bouma, T.J., Morris, E.P., Brun, F.G., Peralta, G., Lara, M., Hendriks, I.E., Van Rijswijk, P., Veuger, B., Soetaert, K. & Middelburg, J.J. (2011). Dissolved organic matter uptake by temperate macrophytes. In . Lunteren, The Netherlands. Van Engeland, T., Bouma, T.J., Morris, E.P., Brun, F.G., Peralta, G., Lara, M., Hendriks, I.E., Van Rijswijk, P., Veuger, B., Soetaert, K. & Middelburg, J.J. (2011). Dissolved nitrogen uptake in the inner bay of Cadiz (Spain). In . Portland, U.S.A..
  22. Van Katwijk, M., Van der Welle, M.E.W., Lucassen, E. C. H. E. T., Vonk, J.A., Christianen, M.J.A., Kiswara, W., Inayat al Hakim, I., Arifin, A., Bouma, T.J., Roelofs, J.G.M. & Lamers, L.P.M. (2011). Early warning indicators for river nutrient and sediment loads in tropical seagrass beds: A benchmark from a near-pristine archipelago in Indonesia. Marine Pollution Bulletin, 62(7), 1512-1520.
  23. Vandenbruwaene, W, Temmerman, S., Bouma, T.J., Klaassen, P.C., Vries, M.B. De, Callaghan, D.P., Steeg, P. van, Dekker, F., Van Duren, L.A., Martini, E., Balke, T., Biermans, G., Schoelynck, J. & Meire, P. (2011). Flow interaction with dynamic vegetation patches: Implications for biogeomorphic evolution of a tidal landscape. Journal of Geophysical Research, 116, F01008.
  24. Weerman, E.J. (2011, mei 11). Spatial patterns in phototrophic biofilms. The role of physical and biological interactions. Radboud Universiteit Nijmegen (Nijmegen: Radboud Universiteit Nijmegen). Prom./coprom.: prof. dr. P.M.J. Herman, W. Admiraal, dr. J. Van de Koppel & dr. H.G. van der Geest.
  25. Weerman, E.J., Geest, H.G., Meulen, M.D., Manders, E.M.M., Van de Koppel, J., Herman, P.M.J. & Admiraal, W. (2011). Ciliates as engineers of phototrophic biofilms. Freshwater Biology, 56(7), 1358-1369.
  26. Weerman, E.J., Herman, P.M.J. & Van de Koppel, J. (2011). Macrobenthos abundance and distribution on a spatially patterned intertidal flat. Marine Ecology Progress Series, 440, 95-103.
  27. Weerman, E.J., Herman, P.M.J. & Van de Koppel, J. (2011). Top-down control inhibits spatial self-organization of a patterned landscape. Ecology, 92(2), 487-495.
  28. Wijnhoven, S., Escaravage, V.L., Herman, P.M.J., Smaal, A.C. & Hummel, H. (2011). Short and mid-long term effects of cockle-dredging on non-target macrobenthic species: A Before-After-Control_Impact experiment on a tidal mudflat in the Oosterschelde (The Netherlands). Marine Ecology, 32(suppl.s1), 117-129.
  29. Ysebaert, T., Yang, S.L., Zhang, L., He, Q., Bouma, T.J. & Herman, P.M.J. (2011). Wave attenuation by two contrasting ecosystem engineering salt marsh macrophytes in the intertidal pioneer zone. Wetlands, 31(6), 1043-1054.
2010
  1. Alonso-Pérez, F., Ysebaert, T. & Castro, C.G. (2010). Effects of suspended mussel culture on benthic-pelagic coupling in a coastal upwelling system (Ría de Vigo, NW Iberian Peninsula). Journal of Experimental Marine Biology and Ecology, 382, 96-107.
  2. Bouma, T.J., Vries, M.B. De & Herman, P.M.J. (2010). Comparing ecosystem engineering efficiency of two plant species with contrasting growth strategies. Ecology, 91(9), 2696-2704.
  3. Callaghan, D.P., Bouma, T.J., Klaassen, P.C., Van der Wal, D., Stive, M.J.F. & Herman, P.M.J. (2010). Hydrodynamic forcing on salt marsh development: distinguishing the relative importance of waves vs. tidal flow. Estuarine Coastal and Shelf Science, 89(1), 73-88.
  4. Colen, C. van, Meulepas, G., Backer, A. De, Van der Wal, D., Vincx, M., Degraer, S. & Ysebaert, T. (2010). Diversity, trait displacements and shifts in assemblage structure of tidal flat deposit feeders along a gradient of hydrodynamic stress. Marine Ecology Progress Series, 406, 79-89.
  5. Colen, C. van, Montserrat Trotsenburg, F., Vincx, M., Herman, P.M.J., Ysebaert, T. & Degraer, S. (2010). Long-term divergent tidal flat benthic community recovery following hypoxia-induced mortality. Marine Pollution Bulletin, 60, 178-186.
  6. Colen, C. van, Montserrat Trotsenburg, F., Vincx, M., Herman, P.M.J., Ysebaert, T. & Degraer, S. (2010). Macrobenthos recruitment success in a tidal flat: feeding trait dependent effects of disturbance history. Journal of Experimental Marine Biology and Ecology, 385, 79-84.
  7. Eriksson, B.K., Heide, T. Van der, Van de Koppel, J., Piersma, T., Veer, H.W. Van der & Olff, H. (2010). Major changes in the ecology of the Wadden Sea: human impacts, ecosystem engineering and sediment dynamics. Ecosystems, 13(5), 752-764.
  8. Heide, T. Van der, Bouma, T.J., Nes, E.H. van, Van de Koppel, J., Scheffer, M., Roelofs, J., Katwijk, M. van & Smolders, A.J.P. (2010). Spatial self-organized patterning in seagrasses along a depth gradient of an intertidal ecosystem. Ecology, 91(2), 362-369.
  9. Hendriks, I.E., Bouma, T.J., Morris, E.P. & Duarte, C.M. (2010). Effects of seagrasses and algae of the Caulerpa family on hydrodynamics and particle-trapping rates. Marine Biology, 157(3), 473-481.
  10. Ibrahim, E., Govaerts, A., Druyts, J., Van der Wal, D., Adam, S., Vervoort, J., Monbaliu, J., Wever, A. De, Sabbe, K. & Forster, R. (2010). Effect of spatial resolution on intertidal sediment characterization. In I. Manakos & C. Kalaitzidis (Eds.), Imagin[e,g] Europe. (pp. 182-189). Amsterdam: IOS Press.
  11. Li, H., Mynett, A., Penning, E. & Qi, H. (2010). Revealing spatial pattern dynamics in aquatic ecosystem modelling with Multi-Agent Systems in Lake Veluwe. Ecological Informatics, 5, 97-107.
  12. Liu, Q.X., Wang, R.H., Jin, Z., Van de Koppel, J. & Alonso, D. (2010). Spatial self-organization in a multi-strain host-pathogen system. Journal of Statistical Mechanics: Theory and Experiment, P05017.
  13. Santos, C.B. De los, Brun, F.G., Bouma, T.J., Vergara, J.J. & Pérez-Lloréns, J.J. (2010). Acclimation of seagrass Zostera noltii to co-occurring hydrodynamic and light stresses. Marine Ecology Progress Series, 398, 127-135.
  14. Sjögersten, S., Kuijper, D., Wal, R. Van der, Loonen, M.J.J.E., Huiskes, A.H.L. & Woodin, S.J. (2010). Nitrogen transfer between herbivores and their forage species. Polar Biology, 33(9), 1195-1203.
  15. Sun, G.Q., Liu, Q.X., Jin, Z., Chakraborty, A. & Li, B.L. (2010). Influence of infection rate and migration on extinction of disease in spatial epidemics. Journal of Theoretical Biology, 264(1), 95-103.
  16. Sun, G.Q., Jin, Z., Liu, Q.X. & Li, B.L. (2010). Rich dynamics in a predator–prey model with both noise and periodic force. BioSystems, 100(1), 14-22.
  17. Van der Wal, D., Kessel, T. Van, Eleveld, M.A. & Vanlede, J. (2010). Spatial heterogeneity in estuarine mud dynamics. Ocean Dynamics, 60(3), 519-533.
  18. Van der Wal, D., Wielemaker-Van den Dool, A. & Herman, P.M.J. (2010). Spatial synchrony of intertidal benthic algal biomass in temperate coastal and estuarine ecosystems. Ecosystems, 13(2), 338-351.
  19. Weerman, E.J., Van de Koppel, J., Eppinga, M.B., Montserrat Trotsenburg, F., Liu, Q.X. & Herman, P.M.J. (2010). Spatial self-organization on intertidal mudflats through biophysical stress divergence. American Naturalist, 176(1), E15-E32.
2009
  1. Arvanitidis, C., Somerfield, P.J., Rumohr, H., Faulwetter, S., Valavanis, V., Vasileiadou, A., Chatzigeorgiou, G., Berghe, E. Vanden, Vanaverbeke, J., Labrune, C., Grémare, A., Zettler, M.L., Kedra, M., Wlodarska-Kowalczuk, M., Aleffi, I.F., Amouroux, J.M., Anisimova, N., Bachelet, G., Büntzow, M., Cochrane, S.J., Costello, M.J., Craeymeersch, J., Dahle, S., Degraer, S., Denisenko, S., Dounas, C., Duineveld, G., Emblow, C., Escavarage, V., Fabri, M.C., Fleischer, D., Gray, J.S., Heip, C.H.R., Herrmann, M., Hummel, H., Janas, U., Karakassis, I., Kendall, M.A., Kingston, P., Kotwicki, L., Laudien, J., Mackie, A.S.Y., Nevrova, E.L., Occhipinti-Ambrogi, A., Oliver, P.G., Olsgard, F., Palerud, R., Petrov, A., Rachor, E., Revkov, N.K., Rose, A., Sardá, R., Sistermans, W.C.H., Speybroeck, J., Van Hoey, G., Vincx, M., Whomersley, P., Willems, W & Zenetos, A. (2009). Biological geography of the European seas: results from the MacroBen database. Marine Ecology Progress Series, 382, 265-278.
  2. Barendregt, A., Ysebaert, T. & Wolff, W.J. (2009). Animal communities in European tidal freshwater wetlands. In A. Barendregt, D.F. Whigham & Baldwin. A.H. (Eds.), Tidal Freshwater Wetlands (pp. 89-104). Leiden: Backhuys Publishers.
  3. Berghe, E. Vanden, Claus, S., Appeltans, W., Faulwetter, S., Arvanitidis, C., Somerfield, P.J., Aleffi, I.F., Amouroux, J.M., Anisimova, N., Bachelet, G., Cochrane, S.J., Costello, M.J., Craeymeersch, J., Dahle, S., Degraer, S., Denisenko, S., Dounas, C., Duineveld, G., Emblow, C., Escaravage, V.L., Fabri, M.C., Fleischer, D., Grémare, A., Herrmann, M., Hummel, H., Karakassis, I., Kedra, M., Kendall, M.A., Kingston, P., Kotwicki, L., Labrune, C., Laudien, J., Nevrova, E.L., Occhipinti-Ambrogi, A., Olsgard, F., Palerud, R., Petrov, A., Rachor, E., Revkov, N.K., Rumohr, H., Sardá, R., Sistermans, W.C.H., Speybroeck, J., Janas, U., Van Hoey, G., Vincx, M., Whomersley, P., Willems, W, Wlodarska-Kowalczuk, M., Zenetos, A., Zettler, M.L. & Heip, C.H.R. (2009). MacroBen integrated database on benthic invertebrates of European continental shelves: a tool for large-scale analysis across Europe. Marine Ecology Progress Series, 382, 225-238.
  4. Bornette, G. & Puijalon, S. (2009). Macrophytes: Ecology of aquatic plants. In Encyclopedia of Life Sciences (ELS) (pp. 1-9). Chichester: John Wiley & Sons.
  5. Borsje, B.W., Buijsman, M.C., Besio, G., Hulscher, S.J.M.H., Herman, P.M.J. & Ridderinkhof, H. (2009). Bio-geomorphological interactions in sandwave migration. In C.A. Vionnet, M.H. Garcia, E.M. Latrubesse & G.M.E. Perillo (Eds.), Proceedings of the sixth IAHR Symposium on River, Coastal and Estuarine Morphodynamics (RCEM) (pp. 567-574). Santa Fe, Argentina.
  6. Borsje, B.W., Buijsman, M.C., Besio, G., Vries, M.B. De, Hulscher, S.J.M.H., Herman, P.M.J. & Ridderinkhof, H. (2009). Modelling bio-physical influences on sandwave dynamics. In M.J. Baptist (Ed.), Proceedings of the NCK-days 2009, Texel, The Netherlands (pp. 30-30).
  7. Borsje, B.W., Vries, M.B. De, Bouma, T.J., Besio, G., Hulscher, S.J.M.H. & Herman, P.M.J. (2009). Modeling bio-geomorphological influences for offshore sandwaves. Continental Shelf Research, 29, 1289-1301.
  8. Borsje, B.W., Buijsman, M.C., Besio, G., Vries, M.B. De, Hulscher, S.J.M.H., Herman, P.M.J. & Ridderinkhof, H. (2009). On the modeling of bio-physical influences on seasonal variation in sandwave dynamics. Journal of Coastal Research, 56 (Sp. Is, 698-702.
  9. Borsje, B.W., Hulscher, S.J.M.H., Herman, P.M.J. & Vries, M.B. De (2009). On the parameterization of biological influences on offshore sand wave dynamics. Ocean Dynamics, 59, 659-670.
  10. Bouma, T.J., Ortells, V. & Ysebaert, T. (2009). Comparing biodiversity effects among ecosystem engineers of contrasting strength: macrofauna diversity in Zostera noltii and Spartina anglica vegetations. Helgoland Marine Research, 63, 3-18.
  11. Bouma, T.J., Friedrichs, M., Van Wesenbeeck, B.K., Temmerman, S., Graf, G. & Herman, P.M.J. (2009). Density-dependent linkage of scale-dependent feedbacks: a flume study on the intertidal macrophyte Spartina anglica. Oikos, 118, 260-268.
  12. Bouma, T.J., Olenin, S., Reise, K. & Ysebaert, T. (2009). Ecosystem engineering and biodiversity in coastal sediments: posing hypotheses. Helgoland Marine Research, 63, 95-106.
  13. Bouma, T.J., Friedrichs, M., Klaassen, P.C., Van Wesenbeeck, B.K., Brun, F.G., Temmerman, S., Katwijk, M. van, G., Graf. & Herman, P.M.J. (2009). Effects of shoot stiffness, shoot size and current velocity on scouring sediment from around seedlings and propagules. Marine Ecology Progress Series, 388, 293-297.
  14. Brun, F.G., Zetten, E. van, Cacabelos-Reyes, E. & Bouma, T.J. (2009). Role of two contrasting ecosystem engineers ( Zostera noltii and Cymodocea nodosa ) on the food intake rate of Cerastoderma edule. Helgoland Marine Research, 63, 19-25.
  15. Colen, C. van, Lenoir, J., Backer, A. De, Vanelslander, B., Vincx, M., Degraer, S. & Ysebaert, T. (2009). Settlement of Macoma balthica larvae in response to benthic diatom films. Marine Biology, 156, 2161-2171.
  16. Colen, C. van, Montserrat Trotsenburg, F., Verbist, K., Vincx, M., Steyaert, M., Vanaverbeke, J., Herman, P.M.J., Degraer, S. & Ysebaert, T. (2009). Tidal flat nematode responses to hypoxia and subsequent macrofauna-mediated alterations of sediment properties. Marine Ecology Progress Series, 381, 189-197.
  17. Escaravage, V.L., Herman, P.M.J., Merckx, B., Bodarska-Kowalczuk, M.W., Amouroux, J.M., Degraer, S., Grémare, A., Heip, C.H.R., Hummel, H., Karakassis, I., Labrune, C. & Willems, W (2009). Distribution patterns of macrofaunal species diversity in subtidal soft sediments: biodiversity-productivity relationships from the MacroBen database. Marine Ecology Progress Series, 382, 253-264.
  18. Grémare, A., Labrune, C., Berghe, E. Vanden, Amouroux, J.M., Bachelet, G., Zettler, M.L., Vanaverbeke, J., Fleischer, D., Bigot, L., Maire, O.G., Deflandre, B., Craeymeersch, J., Degraer, S., Dounas, C., Duineveld, G., Heip, C.H.R., Herrmann, M., Hummel, H., Karakassis, I., Kedra, M., Kendall, M.A., Kingston, P., Laudien, J., Occhipinti-Ambrogi, A., Rachor, E., Sardá, R., Speybroeck, J., Van Hoey, G., Vincx, M., Whomersley, P., Willems, W, Wlodarska-Kowalczuk, M. & Zenetose, A. (2009). Comparison of the performances of two biotic indices based on the MacroBen database. Marine Ecology Progress Series, 382, 297-311.
  19. Ibrahim, E., Adam, S., Van der Wal, D., Wever, A. De, Sabbe, K., Forster, R. & Monbaliu, J. (2009). Assessment of unsupervised classification techniques for intertidal sediments. EARSeL eProceedings, 8(2), 158-179.
  20. Jansen, J.M., Koutstaal, A.G., Bonga, S. Wendelaar & Hummel, H. (2009). Salinity-related growth rates in populations of the European clam Macoma balthica and in field transplant experiments along the Baltic Sea salinity gradient. Marine and Freshwater Behaviour and Physiology, 42, 157-166.
  21. Kiswara, W., Behnke, N., Avesaath, P.H., Huiskes, A.H.L., Erftemeijer, P.L.A. & Bouma, T.J. (2009). Root architecture of six tropical seagrass species, growing in three contrasting habitats in Indonesian waters. Aquatic Botany, 90, 235-245.
  22. Montserrat Trotsenburg, F., Colen, C. van, Provoost, P., Milla, M., Ponti, M., Van den Meersche, K., Ysebaert, T. & Herman, P.M.J. (2009). Sediment segregation by biodiffusing bivalves. Estuarine Coastal and Shelf Science, 83, 379-391.
  23. Nugteren, P. Van, Moodley, L., Brummer, G.J., Heip, C.H.R., Herman, P.M.J. & Middelburg, J.J. (2009). Seafloor ecosystem functioning: the importance of organic matter priming. Marine Biology, 156, 2277-2287.
  24. Nugteren, P. Van, Herman, P.M.J., Moodley, L., Middelburg, J.J., Vos, M. & Heip, C.H.R. (2009). Spatial distribution of detrital resources determines the outcome of competition between bacteria and a facultative detritivorous worm. Limnology and Oceanography, 54, 413-1419.
  25. Olivé, I., García-Sánchez, M.P., Brun, F.G., Vergara, J.J. & Pérez-Lloréns, J.J. (2009). Interactions of light and organic matter under contrasting resource simulated environments: the importance of clonal traits in the seagrass Zostera noltii. Hydrobiologia, 629, 199-208.
  26. Pollux, B.J.A., Luteijn, A.W.W., Groenendael, J.M. van & Ouborg, N.J. (2009). Gene flow and genetic structure of the aquatic macrophyte Sparganium emersum in a linear unidirectional river. Freshwater Biology, 54, 64-76.
  27. Reise, K., Bouma, T.J., Olenin, S. & Ysebaert, T. (2009). Coastal habitat engineers and the biodiversity in marine sediments. Helgoland Marine Research, 63(1 (Special Issue)), 1-2.
  28. Soetaert, K.E.R. & Herman, P.M.J. (2009). A Practical Guide to Ecological Modelling Using R as a Simulation Platform. [s.l.]: Springer.
  29. Van de Koppel, J., Tett, P., Naqvi, W., Oguz, T., Perillo, G.E.M., Rabalais, N., dÁlcalà, M. Ribera, Su, J. & Zhang, J.Z. (2009). Threshold Effects In Semi-Enclosed Marine Systems. In Jr.,.E.R. Urban, B. Sundby, P. Malanotte-Rizzoli & J.M. Melillo (Eds.), Watersheds, Bays and Bounded Seas: The Science and Management of Semi-Enclosed Marine Systems (pp. 31-47). Chicago: Island Press.
  30. Wang, R.H., Liu, Q.X., Sun, G.Q., Zhen, J. & Van de Koppel, J. (2009). Nonlinear dynamic and pattern bifurcations in a model for spatial patterns in young mussel beds. Journal of the Royal Society Interface, 6, 705-718.
  31. Webb, T.J., Aleffi, I.F., Amouroux, J.M., Bachelet, G., Degraer, S., Dounas, C., Fleischer, D., Grémare, A., Herrmann, M., Hummel, H., Karakassis, I., Kedra, M., Kendall, M.A., Kotwicki, L., Labrune, C., Nevrova, E.L., Occhipinti-Ambrogi, A., Petrov, A., Revkov, N.K., Sardá, R., Simboura, N., Speybroeck, J., Van Hoey, G., Vincx, M., Whomersley, P., Willems, W & Wlodarska-Kowalczuk, M. (2009). Macroecology of the European soft sediment benthos: insights from the MacroBen database. Marine Ecology Progress Series, 382, 287-296.
  32. Ysebaert, T., Hart, M.A.C. & Herman, P.M.J. (2009). Impacts of bottom and suspended cultures of mussels Mytilus spp. on the surrounding sedimentary environment and macrobenthic biodiversity. Helgoland Marine Research, 63, 59-74.
2008
  1. Bokhorst, S.F., Huiskes, A.H.L., Convey, P., Bodegom, P.M. van & Aerts, R.A.M. (2008). Climate change effects on soil arthropod communities from the Falkland Islands and the Maritime Antarctic. Soil Biology & Biochemistry, 40, 1547-1556.
  2. Bornette, G., Tabacchi, E., Hupp, C., Puijalon, S. & Rostan, J.C. (2008). A model of plant strategies in fluvial hydrosystems. Freshwater Biology, 53, 1692-1705.
  3. Bouma, T.J., Friedrichs, M., Van Wesenbeeck, B.K., Brun, F.G., Temmerman, S., Vries, M.B. De, Graf, G. & Herman, P.M.J. (2008). Plant growth strategies directly affect biogeomorphology of estuaries. In - Dohmen-Janssen & J.M.H. Hulscher (Eds.), River, Coastal and Estuarine Morphodynamics (pp. 285-292). London: Taylor & Francis Group.
  4. Brun, F.G., Olivé, I., Malta, E.J., Vergara, J.J., Hernández, I. & Pérez-Lloréns, J.J. (2008). Increased vulnerability of Zostera noltii to stress caused by low light and elevated ammonium levels under phosphate deficiency. Marine Ecology Progress Series, 365, 67-75.
  5. Chang, E.R., Veeneklaas, R.M., Buitenwerf, R., Bakker, J.P. & Bouma, T.J. (2008). To move or not to move: determinants of seed retention in a tidal marsh. Functional Ecology, 22, 720-727.
  6. Colen, C. van, Montserrat Trotsenburg, F., Vincx, M., Herman, P.M.J., Ysebaert, T. & Degraer, S. (2008). Macrobenthic recovery from hypoxia in an estuarine tidal mudflat. Marine Ecology Progress Series, 372, 31-42.
  7. Hendriks, I.E., Sintes, T., Bouma, T.J. & Duarte, C.M. (2008). Experimental assessment and modeling evaluation of the effects of seagrass Posidonia oceanica on flow and particle trapping. Marine Ecology Progress Series, 356, 163-173.
  8. Montserrat, F., Colen, C. van, Degraer, S., Ysebaert, T. & Herman, P.M.J. (2008). Benthic community-mediated sediment dynamics. Marine Ecology Progress Series, 372, 43-59.
  9. Morris, E.P., Peralta, G., Brun, F.G., Van Duren, L.A., Bouma, T.J. & Perez-Llorens, J.L. (2008). ERRATUM to: Interaction between hydrodynamics and seagrass canopy structure: Spatially explicit effects on ammonium uptake rates. Limnology and Oceanography, 53, 2056.
  10. Morris, E.P., Peralta, G., Brun, F.G., Van Duren, L.A., Bouma, T.J. & Perez-Llorens, J.L. (2008). Interaction between hydrodynamics and seagrass canopy structure: Spatially explicit effects on ammonium uptake rates. Limnology and Oceanography, 53, 1531-1539.
  11. Peralta, G., Van Duren, L.A., Morris, E.P. & Bouma, T.J. (2008). Consequences of shoot density and stiffness for ecosystem engineering by benthic macrophytes in flow dominated areas: a hydrodynamic flume study. Marine Ecology Progress Series, 368, 103-115.
  12. Pérez Calero, D., Peyaud, A., Van der Wal, D., Hof, J. van 't, Hakkesteegt, H., Vink, R., Bovenkamp, E.G.P. & Antwerpen, G. van (2008). Low altitude remote sensing. In R. Meynart, S.P. Neeck, H. Shimoda & S. Habib (Eds.), Sensors, Systems, and Next-Generation Satellites. Proc. SPIE The International Society for Optical Engineering XII (pp. 71061B). Washington, DC [etc.]: SPIE-The International Society for Optical Engineering.
  13. Petersen, J.K., Nielsen, T.G., Van Duren, L.A. & Maar, M. (2008). Depletion of plankton in a raft culture of Mytilus galloprovincialis in Ría de Vigo, NW Spain. I. Phytoplankton. Aquatic Biology, 4, 113-125.
  14. Puijalon, S., Bouma, T.J., Groenendael, J.M. van & Bornette, G. (2008). Clonal plasticity of aquatic plant species submitted to mechanical stress: escape versus resistance strategy. Annals of Botany, 102, 989-996.
  15. Rietkerk, M. & Van de Koppel, J. (2008). Regular pattern formation in real ecosystems. Trends in Ecology & Evolution, 23, 169-175.
  16. Van de Koppel, J., Gascoigne, J.C., Theraulaz, G., Rietkerk, M., Mooij, W.M. & Herman, P.M.J. (2008). Experimental evidence for spatial self-organization and its emergent effects in mussel beds ecosystems. Science, 322, 739-742.
  17. van de Wouw, M.J., Van Dijk, P.J. & Huiskes, A.H.L. (2008). Regional genetic diversity patterns in Antarctic hairgrass (Deschampsia antartica Desv.). Journal of Biogeography, 35, 365-376.
  18. Van der Wal, D., Ysebaert, T., Forster, R.M., Rossi, F., Bouma, T.J. & Herman, P.M.J. (2008). Synoptic techniques for monitoring the response of intertidal benthic biota to an alternative dredging strategy. In C.M. Dohmen-Janssen & J.M.H. Hulscher (Eds.), River, Coastal and Estuarine Morphodynamics (pp. 307-311). London: Taylor & Francis Group.
  19. Van der Wal, D., Herman, P.M.J., Forster, R.M., Ysebaert, T., Rossi, F., Knaeps, E., Plancke, Y.M.G. & Ides, S.J. (2008). Distribution and dynamics of intertidal macrobenthos predicted from remote sensing: response to microphytobenthos and environment. Marine Ecology Progress Series, 367, 57-72.
  20. Van der Wal, D., Wielemaker-Van den Dool, A. & Herman, P.M.J. (2008). Spatial patterns, rates and mechanisms of saltmarsh cycles (Westerschelde, The Netherlands). Estuarine Coastal and Shelf Science, 76, 357-368.
  21. Van Wesenbeeck, B.K., Van de Koppel, J., Herman, P.M.J. & Bouma, T.J. (2008). Does scale-dependent feedback explain spatial complexity in salt-marsh ecosystems? Oikos, 117, 152-159.
  22. Van Wesenbeeck, B.K., Van de Koppel, J., Herman, P.M.J., Bertness, M.D., Van der Wal, D., Bakker, J.P. & Bouma, T.J. (2008). Potential for sudden shifts in transient systems: Distinguishing between local and landscape-scale processes. Ecosystems, 11, 1133-1141.
  23. Vijver, B. Van de, Gremmen, N.J.M. & Smith, V. (2008). Diatom communities from the sub-Antarctic Prince Edward Islands: diversity and distribution patterns. Polar Biology, 31, 795-808.
  24. Visser, E.J.W., Bögemann, G.M., Smeets, M., Bruin, S. de, Kroon, H. de & Bouma, T.J. (2008). Evidence that ethylene signalling is not involved in selective root placement by tobacco plants in response to nutrient-rich soil patches. New Phytologist, 177, 457-465.
  25. Vonk, J.A., Middelburg, J.J., Stapel, J. & Bouma, T.J. (2008). Dissolved organic nitrogen uptake by seagrasses. Limnology and Oceanography, 53, 542-548.
  26. Yang, S.L., Li, H., Ysebaert, T., Bouma, T.J., Zhang, W.X., Wang, Y., Li, P., Li, M. & Ding, P.X. (2008). Spatial and temporal variations in sediment grain size in tidal wetlands, Yangtze Delta: On the role of physical and biotic controls. Estuaries and Coasts, 77, 657-671
2007
  1. Asmus, R., Asmus, H. & Van Duren, L.A. (2007). Introduction: Hydrodynamic control of aquatic ecosystem processes – How does water movement affect different levels of organisation? Estuaries and Coasts, 75, 279-280.
  2. Azza, N., Van de Koppel, J., Denny, P. & Kansiime, F. (2007). Shoreline vegetation distribution in relation to wave exposure and bay characteristics in a tropical great lake, Lake Victoria. Journal of Tropical Ecology, 23, 353-360.
  3. Bokhorst, S.F., Huiskes, A.H.L., Convey, P. & Aerts, R.A.M. (2007). Climate change effects on organic matter decomposition rates in ecosystems from the Maritime Antarctic and Falkland Islands. Global Change Biology, 13, 2642-2653.
  4. Bokhorst, S.F., Huiskes, A.H.L., Convey, P. & Aerts, R.A.M. (2007). External nutrient inputs into terrestrial ecosystems of the Falkland Islands and the Maritime Antarctic region. Polar Biology, 30, 1315-1321.
  5. Bokhorst, S.F., Ronfort, C., Huiskes, A.H.L., Convey, P. & Aerts, R.A.M. (2007). Food choice of Antarctic soil arthropods clarified by stable isotope signatures. Polar Biology, 30, 983-990.
  6. Bokhorst, S.F., Huiskes, A.H.L., Convey, P. & Aerts, R.A.M. (2007). The effect of environmental change on vascular plant and cryptogam communities from the Falkland Islands and the Maritime Antarctic. BMC Ecology, 7, 15 [1-13].
  7. Bos, A.R., Bouma, T.J., Kort, G.L.J. de & Katwijk, M. van (2007). Ecosystem engineering by annual intertidal seagrass beds: Sediment accretion and modification. Estuaries and Coasts, 74, 344-348.
  8. Bouma, T.J., Van Duren, L.A., Temmerman, S., Claverie, T., Blanco-Garcia, A., Ysebaert, T. & Herman, P.M.J. (2007). Spatial flow and sedimentation patterns within patches of epibenthic structures: combining field, flume and modelling experiments. Continental Shelf Research, 27, 1020-1045.
  9. Brun Murillo, F.G., Cummaudo, F., Olivé, I., Vergara, J.J. & Pérez-Lloréns, J.J. (2007). Clonal extent, apical dominance and networking features in the phalanx angiosperm Zostera noltii Hornem. Marine Biology, 151, 1917-1927.
  10. Fernandes, S., Sobral, P. & Van Duren, L.A. (2007). Clearance rates of Cerastoderma edule under increasing current velocity. Continental Shelf Research, 27, 1104-1115.
  11. Florez-Sarasa, I.D., Bouma, T.J., Medrano, H., Azcon-Bieto, J. & Ribas-Carbo, M. (2007). Contribution of the cytochrome and alternative pathways to growth respiration and maintenance respiration in Arabidopsis thaliana. Physiologia Plantarum, 129, 143-151.
  12. Heide, T. Van der, Nes, E.H. van, Geerling, G.W., Smolders, A.J.P., Bouma, T.J. & Katwijk, M. van (2007). Positive feedbacks in seagrass ecosystems : Implications for success in conservation and restoration. Ecosystems, 10, 1311-1322.
  13. Huiskes, A.H.L. (2007). Evolution and biodiversity in the Antarctic: the response of life. Antarctic Science, 19, 279-281.
  14. Hulzen, J. B. Van, Van Soelen, J. & Bouma, T.J. (2007). Morphological variation and habitat modification are strongly correlated for the autogenic ecosystem engineer Spartina anglica (common cordgrass). Estuaries and Coasts, 30, 3-11.
  15. Maris, T., Cox, T.J.S., Temmerman, S., Vleeschauwer, P. De, Damme, S. Van, Mulder, T. De, Bergh, E. Van den & Meire, P. (2007). Tuning the tide: creating ecological conditions for tidal marsh development in a flood control area. Hydrobiologia, 588, 31-43.
  16. Middelburg, J.J. & Herman, P.M.J. (2007). Organic matter processing in tidal estuaries. Marine Chemistry, 106, 127-147.
  17. Neutel, A-M., Heesterbeek, J.A.P., Van de Koppel, J., Hoenderboom, G., Vos, A., Kaldeway, C., Berendse, F. & Ruiter, P.C. de (2007). Reconciling complexity with stability in naturally assembling food webs. Nature, 449, 599-602.
  18. Olivé, I., Brun Murillo, F.G., Vergara, J.J. & Pérez-Lloréns, J.J. (2007). Effects of light and biomass partitioning on growth, photosynthesis and carbohydrate content of the seagrass Zostera nolti Hornem. Journal of Experimental Marine Biology and Ecology, 345, 90-100.
  19. Øvstedal, D.O. & Gremmen, N.J.M. (2007). Additions and corrections to the lichen mycobiota of the subantarctic Prince Edward Islands. Nova Hedwigia, 85, 249-257.
  20. Philippart, C.J.M., Beukema, J.J., Cadée, G.C., Dekker, R., Goedhart, P.W., Iperen, J.M. van, Leopold, M.F. & Herman, P.M.J. (2007). Impacts of nutrient reduction on coastal communities. Ecosystems, 10, 96-119.
  21. Rabaut, M., Guilini, K., Van Hoey, V.H., Vincx, M. & Degraer, S. (2007). A bio-engineered soft-bottom environment: The impact of Lanice conchilega on the benthic species-specific densities and community structure. Estuaries and Coasts, 75, 525-536.
  22. Rossi, F., Forster, R.M., Montserrat Trotsenburg, F., Ponti, M., Terlizzi, A., Ysebaert, T. & Middelburg, J.J. (2007). Human trampling as short-term disturbance on intertidal mudflats: effects on macrofauna biodiversity and population dynamics of bivalves. Marine Biology, 151, 2077-2090.
  23. Struyf, E., Temmerman, S. & Meire, P. (2007). Dynamics of biogenic Si in freshwater tidal marshes: Si generation and retention in marsh sediments (Scheldt estuary). Biogeochemistry, 82, 41-53.
  24. Temmerman, S., Bouma, T.J., Van de Koppel, J., Van der Wal, D., Vries, M.B. De & Herman, P.M.J. (2007). Vegetation causes channel erosion in a tidal landscape. Geology, 35, 631-634.
  25. Van der Wal, D. & Herman, P.M.J. (2007). Regression-based synergy of optical, shortwave infrared and microwave remote sensing for monitoring the grain-size of intertidal sediments. Remote Sensing of Environment, 111, 89-106.
  26. Van Duren, L.A. (2007). Boundary Layers. In M..W. Denny & S..D. Gaines (Eds.), Encyclopedia of Tidepools and Rocky Shores (pp. 108-111). Berkeley: California University Press.
  27. Van Hoey, V.H., Vincx, M. & Degraer, S. (2007). Temporal variability in the Abra alba community determined by global and local events. Journal of Sea Research, 58, 144-155.
  28. Van Wesenbeeck, B.K. (2007, juli 06). Thresholds and shifts: Consequences of habitat modification in salt-marsh pioneer zones. Rijksuniversiteit Groningen (128 pag.). Prom./coprom.: J.P. Bakker, prof. dr. P.M.J. Herman, M.D. Bertness & dr. T.J. Bouma.
  29. Van Wesenbeeck, B.K., Van de Koppel, J., Herman, P.M.J., Bakker, J.P. & Bouma, T.J. (2007). Biomechanical warfare in ecology; negative interactions between species by habitat modification. Oikos, 116, 742-750.
  30. Van Wesenbeeck, B.K., Crain, C.M., Altieri, A.H. & Bertness, M.D. (2007). Distinct habitat types arise along a continuous hydrodynamic stress gradient due to interplay of competition and facilitation. Marine Ecology Progress Series, 349, 63-71.
  31. Wal, R. Van der, Sjögersten, S., Woodin, S.J., Cooper, E.J., Jónsdóttir, I.S., Kuijper, D., Fox, A.D. & Huiskes, A.H.L. (2007). Spring feeding by pink-footed geese reduces carbon stocks and sink strength in tundra ecosystems. Global Change Biology, 13, 539-545.
  32. Yergeau, E., Bokhorst, S.F., Huiskes, A.H.L., Boschker, H.T.S., Aerts, R.A.M. & Kowalchuk, G.A. (2007). Size and structure of bacterial, fungal and nematode communities along an Antarctic environmental gradient. FEMS Microbiology Ecology, 59, 436-451.
2006
  1. Azza, N., Denny, P., Van de Koppel, J. & Kansiime, F. (2006). Floating mats: their occurrence and influence on shoreline distribution of emergent vegetation. Freshwater Biology, 51, 1286-1297.
  2. Bergstrom, D.M., Convey, P. & Huiskes, A.H.L. (2006). Trends in Antarctic Terrestrial and Limnetic Ecosystems, Antarctica as a global Indicator. Dordrecht: Springer.
  3. Bergstrom, D.M., Huiskes, A.H.L. & Convey, P. (2006). The Antarctic: Local Signals, Global Messages. In D. Bergstrom, P. Convey & A.H.L. Huiskes (Eds.), Trends in Antarctic Terrestrial and Limnetic Ecosystems, Antarctica as a Global Indicator (pp. 339-345). Dordrecht: Springer.
  4. Blott, S.J., Pye, K., Van der Wal, D. & Neal, A. (2006). Long-term morphological change and its causes in the Mersey Estuary, NW England. Geomorphology, 81, 185-206.
  5. Brun, F.G., Vergara, J.J., Peralta, G., García-Sánchez, M.P., Hernández, I. & Pérez-Lloréns, J.J. (2006). Clonal building, simple growth rules and phylloclimate as key steps to develop functional-structural seagrass models. Marine Ecology Progress Series, 323, 133-148.
  6. Convey, P., Frenot, Y., Gremmen, N.J.M. & Bergstrom, D.M. (2006). Biological Invasions. In D. Bergstrom, P. Convey & A.H.L. Huiskes (Eds.), Trends in Antarctic Terrestrial and Limnetic Ecosystems, Antarctica as a Global Indicator (pp. 191-218). Dordrecht: Springer.
  7. Cooper, E.J., Jónsdóttir, I.S., Chaput, D., Kuijper, D., Loonen, M.J.J.E., Pahud, A., Sjögersten, S., Ubels, R., Van der Wal, R., Woodin, S.J. & Huiskes, A.H.L. (2006). Climate change and goose grazing on Svalbard's tundra. In Arctic Climate Impact Assessment (ACIA) International Scientific Symposium on Climate Change in the Arctic November 9-12, 2004, Reykjavik, Iceland (pp. 3-p.). International Arctic Research Center, University of Alaska, Fairbanks AK, USA.
  8. Ellis, J., Ysebaert, T., Hume, T., Norkko, A., Bult, T., Herman, P.M.J., Thrush, S. & Oldman, J. (2006). Predicting macrofaunal species distribution in estuarine gradients using logistic regression and classification systems. Marine Ecology Progress Series, 316, 69-83.
  9. Escaravage, V.L., Herman, P.M.J. & Heip, C.H.R. (2006). Nutrient dynamics in European water systems, the management perspective emerging from ELOISE, a European cluster of Land-Ocean interaction studies. Environmental Sciences, 3, 97-112.
  10. Friedrichs, M., Graf, G. & Van Duren, L.A. (2006). Preface : Bio-fluid-dynamics: Exchange processes at the sediment-water interface. Journal of Sea Research, 55, 1-2.
  11. Hendriks, I.E., Van Duren, L.A. & Herman, P.M.J. (2006). Turbulence levels in a flume compared to the field: Implications for larval settlement studies. Journal of Sea Research, 55, 15-29.
  12. Hennion, F., Huiskes, A.H.L., Robinson, S.A. & Convey, P. (2006). Physiological Traits of Organisms in a Changing Environment. In D. Bergstrom, P. Convey & A.H.L. Huiskes (Eds.), Trends in Antarctic Terrestrial and Limnetic Ecosystems, Antarctica as a global Indicator (pp. 127-159). Dordrecht: Springer.
  13. HilleRisLambers, R., Van de Koppel, J. & Herman, P.M.J. (2006). Persistence despite omnivory: benthic communities and the discrepancy between theory and observation. Oikos, 113, 23-32.
  14. Huiskes, A.H.L., Convey, P. & Bergstrom, D.M. (2006). Trends in Antarctic Terrestrial and Limnetic Ecosystems: Antarctica as a Global Indicator. In D. Bergstrom, P. Convey & A.H.L. Huiskes (Eds.), Trends in Antarctic Terrestrial and Limnetic Ecosystems, Antarctica as a global Indicator (pp. 1-13). Dordrecht: Springer.
  15. Huiskes, A.H.L., Boschker, H.T.S., Lud, D. & Moerdijk-Poortvliet, T.C.W. (2006). Stable isotope ratio analysis as a tool for assessing habitat differentiation in Antarctic terrestrial ecosystems. Plant Ecology, 182, 79-86.
  16. Jansen, C., Kempen, M. M. L. van, Bögemann, G.M., Bouma, T.J. & Kroon, H. de (2006). Limited costs of wrong root placement in Rumex palustris in heterogeneous soils. New Phytologist, 171, 117-126.
  17. Jonsson, P.R., Van Duren, L.A., Amielh, M., Asmus, R., Aspden, R.J., Daunys, D., Friedrichs, M., Friend, P.L., Olivier, F., Pope, N., Precht, E., Sauriau, P-G. & Schaaff, E. (2006). Making water flow: a comparison of the hydrodynamic characteristics of 12 different benthic biological flumes. Aquatic Ecology, 40, 409-438.
  18. Leuven, R.S.E.W., Heuvel, P. J. van den, Katwijk, M. van, Herman, P.M.J., Velde, G. van der & Ragas, A.M.J. (2006). Pieter Hendrik Nienhuis: aquatic ecologist and environmental scientist. Hydrobiologia, 565, 1-18.
  19. O'Connell, M.J., Huiskes, A.H.L., Loonen, M.J.J.E., Madsen, J., Klaassen, M.R.J. & Rounsevell, M. (2006). Developing an integrated approach to understanding the effects of climate change and other environmental alteratios at a flyway level. In G.C. Boere, C.A. Galbraith & D.A. Stroud (Eds.), Waterbirds Around the World (pp. 385-397). Edinburgh: The Stationery Office.
  20. Øvstedal, D.O. & Gremmen, N.J.M. (2006). Lichens of sub-Antarctic Heard Island. South African Journal of Botany, 72, 353-366.
  21. Peralta, P., Brun, F.G., Pérez-Lloréns, J.J. & Bouma, T.J. (2006). Direct effects of current velocity on the growth, morphometry and architecture of seagrasses: a case study on Zostera noltii. Marine Ecology Progress Series, 327, 135-142.
  22. Van de Koppel, J. & Crain, C.M. (2006). Scale-Dependent Inhibition Drives Regular Tussock Spacing in a Freshwater Marsh. American Naturalist, 168, E136-E147.
  23. Van de Koppel, J., Altieri, A.H., Silliman, B.R., Bruno, J.F. & Bertness, M.D. (2006). Scale-dependent interactions and community structure on cobble beaches. Ecology Letters, 9, 45-50.
  24. Van der Wal, A. & Herman, P.M.J. (2006). Quantifying the particle size of intertidal sediments with satellite remote sensing in the visible light, thermal infrared and microwave spectral domain. In N. Kerle & A.K. Skidmore (Eds.), ISPRS Commission VII Mid-term Symposium "Remote Sensing: From Pixels To Processes", Enschede, The Netherlands, 8-11 May 2006 (pp. 618-622). Enschede: ITC.
  25. Van Duren, L.A., Herman, P.M.J., Sandee, A.J.J. & Heip, C.H.R. (2006). Effects of mussel filtering activity on boundary layer structure. Journal of Sea Research, 55, 3-14.
  26. Van Duren, L.A. & Jonsson, P.R. (2006). Preface [by Volme 40 Aquatic Ecology]. Aquatic Ecology, 40, 407-408.
  27. Van Oevelen, D., Soetaert, K.E.R., Middelburg, J.J., Herman, P.M.J., Moodley, L., Hamels, I., Moens, T. & Heip, C.H.R. (2006). Carbon flows through a benthic food web: Integrating biomass, isotope and tracer data. Journal of Marine Research, 64, 453-482.
  28. Van Soelen, J., Herman, P.M.J. & Bouma, T.J. (2006). The significance of spatial and temporal patterns of algal mat deposition in structuring salt-marsh vegetation. Journal of Vegetation Science, 17, 291-298.
  29. Wiles, P.J., Van Duren, L.A., Häse, C., Larsen, J. & Simpson, J.H. (2006). Stratification and mixing in the Limfjorden in relation to mussel culture. Journal of Marine Systems, 160, 129-143.
2005
  1. Bakker, J.P., Bouma, T.J. & Van Wijnen, H. J. (2005). Interactions between microorganisms and intertidal plant communities. In E. Kristensen, R.R. Haese & J.E. Kostka (Eds.), Macro- and Microorganisms in Marine Sediments (Coastal and Estuarine Studies, 60) (pp. 179-198). Washington, DC: American Geophysical Union.
  2. Bouma, T.J. (2005). Understanding plant respiration: separating respiratory components versus a process-based approach. In H. Lambers & M. Ribas-Carbo (Eds.), Plant Respiration: From Cell to Ecosystem (pp. 177-194). Dordrecht: Springer.
  3. Bouma, T.J., Vries, M.B. De, Low, E., Kusters, L., Herman, P.M.J., Tánczos, I. C., Temmerman, S., Hesselink, A., Meire, P. & Regenmortel, S. Van (2005). Flow hydrodynamics on a mudflat and in salt marsh vegetation: identifying general relationships for habitat characterisations. Hydrobiologia, 540, 259-274.
  4. Bouma, T.J., Vries, M.B. De, Low, E., Peralta, G., Tánczos, I. C., Van de Koppel, J. & Herman, P.M.J. (2005). Trade-offs related to ecosystem engineering: a case study on stiffness of emerging macrophytes. Ecology, 86, 2187-2199.
  5. Damme, S. Van, Struyf, E., Maris, T., Ysebaert, T., Dehairs, F., Tackx, M., Heip, C.H.R. & Meire, P. (2005). Spatial and temporal patterns of water quality along the estuarine salinity gradient of the Scheldt estuary (Belgium and The Netherlands): results of an integrated monitoring approach. Hydrobiologia, 540, 29-45.
  6. Ernst, A., Deicher, M., Herman, P.M.J. & Wollenzien, U.I.A. (2005). Nitrate and Phosphate Affect Cultivability of Cyanobacteria from Environments with Low Nutrient Levels. Applied and Environmental Microbiology, 71, 3379-3383.
  7. Evrard, V.P.E., Kiswara, W., Bouma, T.J. & Middelburg, J.J. (2005). Nutrient dynamics of seagrass ecosystems: 15N evidence for the importance of particulate organic matter and root systems. Marine Ecology Progress Series, 295, 49-55.
  8. Greve, M., Gremmen, N.J.M., Gaston, K.J. & Chown, S.L. (2005). Nestedness of Southern Ocean island biotas: ecological perspectives on a biogeographical conundrum. Journal of Biogeography, 32, 155-168.
  9. Heip, C.H.R., Herman, P.M.J., Middelburg, J.J., Moodley, L., Soetaert, K.E.R. & Ysebaert, T. (2005). The ecology of estuarine intertdal flats - the example of the Westerschelde. In J.G. Wilson (Ed.), The Intertidal Ecosystem: The Values of Ireland's Shores (pp. 179-195). Dublin: Royal Irish Academy.
  10. Hendriks, I.E., Duren, L.A. Van & Herman, P.M.J. (2005). Image analysis techniques: A tool for the identification of bivalve larvae? Journal of Sea Research, 54, 151-164.
  11. Herman, P.M.J., Ysebaert, T. & Heip, C.H.R. (2005). Land-ocean fluxes and coastal ecosystems - a guided tour of ELOISE results. In J. Vermaat, L. Bouwer, K. Turner & W. Salomons (Eds.), Managing European Coasts : Past, Present and Future (pp. 21-85). Berlin: Springer.
  12. Huiskes, A.H.L., Boschker, H.T.S., Lud, D., Moerdijk-Poortvliet, T.C.W. & Cannone, N. (2005). Stable isotope ratios as a tool for assessing the marine influence on Antarctic terrestrial ecosystems. In N. Cannone & M. Guglielmin (Eds.), 5th Workshop on Regional Sensitivity to Climate Change in Antarctic Terrestrial and Limnetic Ecosystems (Terra Antarctica Reports No. 11) (pp. 33-36). Siena: Terra Antarctica Publication.
  13. Kiswara, W., Huiskes, A.H.L. & Herman, P.M.J. (2005). Uptake and allocation of 13C by Enhalus acoroides at sites differing in light availability. Aquatic Botany, 81, 353-366.
  14. Meire, P., Ysebaert, T., Van Damme, S, Van den Bergh, E., Maris, T. & Struyf, E. (2005). The Scheldt estuary: a description of a changing ecosystem. Hydrobiologia, 540, 1-11.
  15. Moodley, L., Middelburg, J.J., Herman, P.M.J., Soetaert, K.E.R. & Lange, G.J. de (2005). Oxygenation and organic matter preservation in marine sediments: direct experimental evidence from ancient carbon-rich deposits. Geology, 33, 889-892.
  16. Moodley, L., Middelburg, J.J., Soetaert, K.E.R., Boschker, H.T.S., Herman, P.M.J. & Heip, C.H.R. (2005). Similar rapid response to phytodetritus deposition in shallow and deep-sea sediments. Journal of Marine Research, 63, 457-469.
  17. Moschella, P.S., Laane, R.W.P.M., Bäck, S., Behrendt, H., Bendoricchio, G., Georgiou, S., Herman, P.M.J., Lindeboom, H, Skourtous, M.S., Tett, P., Voss, M. & Windhorst, W. (2005). Group report : Methodologies to support implementation of the water framework directive. In J. Vermaat, L. Bouwer, K. Turner & W. Salomons (Eds.), Managing European Coasts : Past, Present and Future (pp. 137-152). Berlin: Springer.
  18. Rochelle-Newall, E.J., Klein, R., Nicholls, R.J., Barrett, K., Behrendt, H., Bresser, T.H.M., Cieslak, A., de Bruin, E.F.L.M., Edwards, T., Herman, P.M.J., Laane, R.W.P.M., Ledoux, L., Lindeboom, H, Lise, W., Moncheva, S., Moschella, P.S., Stive, M.J.F. & Vermaat, J.E. (2005). Group report : Global change and the European coast - climate change and economic developement. In J. Vermaat, L. Bouwer, K. Turner & W. Salomons (Eds.), Managing European Coasts : Past, Present and Future (pp. 239-254). Berlin: Springer.
  19. Saye, S.E., Van der Wal, D., Pye, K. & Blott, S.J. (2005). Beach-dune morphological relationships and erosion/accretion: an investigation at five sites in England and Wales using LIDAR data. Geomorphology, 72, 128-155.
  20. Silliman, B.R., Van de Koppel, J., Bertness, M.D., Stanton, L. & Mendelssohn, I.A. (2005). Drought, snails, and large-scale die-off of Southern U.S. salt marshes. Science, 310, 1803-1806.
  21. Temmerman, S., Bouma, T.J., Govers, G. & Lauwaet, D. (2005). Flow paths of water and sediment in a tidal marsh: relations with marsh developmental stage and tidal inundation height. Estuaries and Coasts, 28, 338-352.
  22. Temmerman, S., Bouma, T.J., Vries, M.B. De, Wang, Z.B., Govers, G. & Herman, P.M.J. (2005). impact of vegetation on flow routing and sedimentation patterns : three-dimensional modeling for a tidal marsh. Journal of Geophysical Research, 110, F04019.
  23. Thrush, S., Hewitt, J.E., Herman, P.M.J. & Ysebaert, T. (2005). Multi-scale analysis of species-environment relationships. Marine Ecology Progress Series, 302, 13-26.
  24. Van de Koppel, J., Rietkerk, M., Dankers, N. & Herman, P.M.J. (2005). Scale-Dependent Feedback and Regular Spatial Patterns in Young Mussel Beds. American Naturalist, 165, E66-E77.
  25. Van de Koppel, J., Van der Wal, D., Bakker, J.P. & Herman, P.M.J. (2005). Self-Organization and Vegetation Collapse in Salt Marsh Ecosystems. American Naturalist, 165, E1-E12.
  26. Van de Koppel, J., Bardgett, R.D., Bengtsson, J., Rodriguez-Barrueco, C., Rietkerk, M., Wassen, M.J. & Wolters, V. (2005). The effects of spatial scale on trophic interactions. Ecosystems, 8, 801-807.
  27. Van den Bergh, E., Ysebaert, T. & Meire, P. (2005). Water bird communities in the Lower Zeeschelde: long-term changes near an expanding harbour. Hydrobiologia, 540, 237-258.
  28. van der Meer, J.R., Heip, C.H.R., Herman, P.M.J., Moens, T. & Van Oevelen, D. (2005). Measuring the flow of energy and matter in marine benthic animal populations. In A. Eleftheriou & A.D. McIntyre (Eds.), Ecology of Marine Benthos - Third Edition (pp. 326-407). Oxford: Blackwell.
  29. Van der Wal, D., Wielemaker-Van den Dool, A. & Herman, P.M.J. (2005). Mapping surface roughness and sediment texture of an estuarine intertidal flat using ERS-2 SAR imagery. In H. Lacoste & L. Ouwehand (Eds.), Proceedings of the 2004 Envisat & ERS Symposium 6-10 Sept. 2004 (SP-572) (pp. 1-9). Salzburg, Austria: European Space Agency (ESA) Publications Div., Noordwijk, The Netherlands.
  30. Van der Wal, D., Herman, P.M.J. & Wielemaker-Van den Dool, A. (2005). Characterisation of surface roughness and sediment texture of intertidal flats using ERS SAR imagery. Remote Sensing of Environment, 98, 96-109.
  31. Vana, J.I. & Gremmen, N.J.M. (2005). Hepatics of Heard Island. Cryptogamie Bryologie, 26, 79-90.
  32. Ysebaert, T., Fettweis, M., Meire, P. & Sas, M. (2005). Benthic variability in intertidal soft-sediments in the mesohaline part of the Schelde estuary. Hydrobiologia, 540, 197-216.