Research > Departments Texel > Biological Oce... > Publications
A A A

Publicaties Biologische Oceanografie

2011
  1. Abouchami, W., Galer, S., de Baar, H., Alderkamp, A., Middag, R., Laan, P., Feldmann, H., Andreae, M. Modulation of the Southern Ocean cadmium isotope signature by ocean circulation and primary productivity. Earth and Planetary Science Letters 305, 83-91.
  2. Agogue, H., Lamy, D., Neal, P.R., Sogin, M.L., Herndl, G.J. Water mass-specificity of bacterial communities in the North Atlantic revealed by massively parallel sequencing. Molecular Ecology 20, 258-274.
  3. Alderkamp, A.C., Garcon, V., de Baar, H.J., Arrigo, K.R. Short-term photoacclimation effects on photoinhibition of phytoplankton in the Drake Passage (Southern Ocean). Deep-Sea Research Part I-Oceanographic Research Papers 58, 943-955.
  4. Bos, A.R., Gumanao, G.S., Mueller, B. Feeding biology and symbiotic relationships of the corallimorpharian Paracorynactis hoplites (Anthozoa: Hexacorallia). Raffles Bulletin of Zoology 59, 245-250.
  5. Bos, A.R., Gumanao, G.S., van Katwijk, M.M., Mueller, B., Saceda, M.M., Tejada, R.P. Ontogenetic habitat shift, population growth, and burrowing behavior of the Indo-Pacific beach star, Archaster typicus (Echinodermata, Asteroidea). Marine Biology 158, 639–648.
  6. Compton, T.J., Kraan, C., Rijkenberg, M.J.A., Troost, T.A., Rogers, D.I., Leyrer, J., Pearson, G., Piersma, T. Sampling bivalves on tidal flats: possibility of missing rare species, versus smoothing of environmental variation. Marine Ecology Progress Series 440, 285–288, doi: 10.3354/meps09419.
  7. De Corte, D., Sintes, E., Yokokawa, T., Herndl, G.J. Changes in viral and bacterial communities during the ice-melting season in the coastal Arctic (Kongsfjorden, Ny-Alesund). Environmental Microbiology 13, 1827-1841.
  8. Evans, C., Thomson, P.G., Davidson, A.T., Bowie, A.R., van den Enden, R., Witte, H., Brussaard, C.P.D. Potential climate change impacts on microbial distribution and carbon cycling in the Australian Southern Ocean. Deep Sea Res II 58, 2150-2161.
  9. Fahrbach, E., de Baar, H.J.W., Garçon, V.C., Provost, C. Introduction to physics, carbon dioxide, trace elements and isotopes in the Southern Ocean: The Polarstern expeditions ANT-XXIV/3 (2008) and ANT-XXIII/3 (2006). Deep-Sea Research Part II 56, 2501-2508.
  10. Hassler, C.S., Schoemann, V., Nichols, C.M., Butler, E.C.V., Boyd, P.W. Saccharides enhance iron bioavailability to Southern Ocean phytoplankton. Proceedings of the National Academy of Sciences of the United States of America 108, 1076-1081.
  11. Jiao, N., Herndl, G.J., Hansell, D.A., Benner, R., Kattner, G., Wilhelm, S.W., Kirchman, D.L., Weinbauer, M.G., Luo, T., Chen, F., Azam, F. The microbial carbon pump and the oceanic recalcitrant dissolved organic matter pool. Nature Reviews Microbiology 9, 555.
  12. Klunder, M.B., Laan, P., Middag, R., de Baar, H.J.W., van Ooijen, J. Dissolved iron in the Southern Ocean (Atlantic sector) Deep-Sea Research Part II 56, 2678-2694.
  13. Lannuzel, D., Bowie, A.R., van der Merwe, P.C., Townsend, A.T., Schoemann, V. Distribution of dissolved and particulate metals in Antarctic sea ice. Marine Chemistry 124, 134-146.
  14. Llabres, M., Agusti, S., Herndl, G.J. Diel in situ picophytoplankton cell death cycles coupled with cell division. Journal of Phycology 47, 1247-1257.
  15. Luttikhuizen, P.C., Bol, A., Witte, H., van Bleijswijk, J., Haddrath, O., Baker, A.J., Piersma, T., Reneerkens, J. Novel and cross-species microsatellite markers for parentage analysis in Sanderling Calidris alba. Journal of Ornithology 152, 807-810.
  16. Maier, C., de Kluijver, A., Agis, M., Brussaard, C.P.D., van Duyl, F.C., Weinbauer, M.G. Dynamics of nutrients, total organic carbon, prokaryotes and viruses in onboard incubations of cold-water corals. Biogeosciences 8, 2609-2620.
  17. Masquelier, S., Foulon, E., Jouenne, F., Ferreol, M., Brussaard, C.P.D., Vaulot, D.  Distribution of eukaryotic plankton in the English Channel and the North Sea in summer. Journal of Sea Research 66, 111-122.
  18. Middag, R., de Baar, H., Laan, P., Klunder, M. Fluvial and hydrothermal input of manganese into the Arctic Ocean. Geochimica et Cosmochimica Acta 75, 2393-2408.
  19. Middag, R., de Baar, H.J.W., Laan, P., Cai, P.H., van Ooijen, J.C. Dissolved Manganese in the Atlantic sector of the Southern Ocean. Deep-Sea Research II 58, 2661-2677, doi:10.1016/j.dsr2.2010.10.043.
  20. Middag, R., van Slooten, C., de Baar, H.J.W., Laan, P. Dissolved aluminium in the Southern Ocean. Deep-Sea Research Part II 56, 2647-2660.
  21. Morgan-Smith, D., Herndl, G.J., van Aken, H.M., Bochdansky, A.B. Abundance of eukaryotic microbes in the deep subtropical North Atlantic. Aquatic Microbial Ecology 65,103-115.
  22. Mueller, B., Bos, A.R., Graf G., Gumanao G.S. Size-specific locomotion rate and movement pattern of four common Indo-Pacific sea stars (Echinodermata, Asteroidea). Aquatic Biology 12, 157-164.
  23. Neven, I.A., Stefels, J., van Heuven, S.M.A.C., de Baar, H.J.W., Elzenga, J.T.M. High plasticity in inorganic carbon uptake by Southern Ocean phytoplankton in response to ambient CO2. Deep-Sea Research Part II 56, 2636-2646.
  24. Peperzak, L., Brussaard, C.P. Flow cytometric applicability of fluorescent vitality probes on phytoplankton. Journal of Phycology 47, 692-702.
  25. Peperzak, L., Timmermans, K.R., Wernand, M.R., Oosterhuis, S., van der Woerd, H.J. A mesocosm tool to optically study phytoplankton dynamics. Limnology and Oceanography: Methods 9, 232-244.
  26. Rijkenberg, M.J.A., Langlois, R.J., Mills, M.M., Patey, M.D., Hill, P.G., Nielsdóttir, M.C., Compton, T.J., LaRoche, J., Achterberg, E.P. Environmental forcing of nitrogen fixation in the eastern (sub-) tropical North Atlantic Ocean. PLoS ONE 6, e28989, doi:10.1371/journal.pone.0028989,
  27. Rutgers van der Loeff, M., Cai, P.H., Stimac, I., Bracher, A., Middag, R., Klunder, M.B., van Heuven, S.M.A.C. 234Th in surface waters: Distribution of particle export flux across the Antarctic Circumpolar Current and in the Weddell Sea during the GEOTRACES expedition ZERO and DRAKE Deep-Sea Research Part II 56, 2749-2766.
  28. Shipboard Party. Dedication. Deep-Sea Research Part II 56, 2497-2500.
  29. Thuróczy, C.‐E., Gerringa, L.J.A., Klunder, M., Laan, P., Le Guitton, M., de Baar, H.J.W. Distinct trends in the speciation of iron between the shallow shelf seas and the deep basins of the Arctic Ocean. Journal of Geophysical Research 116, C10009, doi:10.1029/2010JC006835, 2011,1-21.
  30. Thuróczy, C.-E., Gerringa, L.J.A., Klunder, M.B., Laan, P., de Baar, H.J.W. Observation of consistent trends in the organic complexation of dissolved iron in the Atlantic sector of the Southern Ocean Deep-Sea Research Part II 56, 2695-2706.
  31. van der Woerd, H.J., Blauw, A., Peperzak, L., Pasterkamp, R., Peters, S. Analysis of the spatial evolution of the 2003 algal bloom in the Voordelta (North Sea). Journal of Sea Research 65, 195-204.
  32. van Duyl, F.C., Moodley, L., Nieuwland, G., van IJzerloo, L., van Soest, R.W.M., Houtekamer, M., Meesters, E.H., Middelburg J.J. Coral cavity sponges depend on reef-derived food resources: stable isotope and fatty acid constraints. Marine Biology 158, 1653-1666.
  33. van Heuven, S.M.A.C., Hoppema, M., Huhn, O., Slagter, H.A., de Baar, H.J.W. Direct observation of increasing CO2 in the Weddell Gyre along the Prime Meridian during 1973–2008 Deep-Sea Research Part II 56, 2613-2635.
  34. Varela, M.M., van Aken, H.M., Sintes, E., Reinthaler, T., Herndl, G.J. Contribution of Crenarchaeota and Bacteria to autotrophy in the North Atlantic interior. Environmental Microbiology 13, 1524-1533.
PhD theses
  1. Thuróczy, C-E. Physical and chemical speciation of iron in the polar oceans University of Groningen, 206 pp.

 

naar boven

2010
  1. Alderkamp, A.C., de Baar, H.J.W., Visser, R.J.W. and Arrigo, K.R. Can photoinhibition control phytoplankton abundance in deeply mixed water columns of the Southern Ocean? Limnology and Oceanography, 55(3), 1248-1264.
  2. Baltar, F., Aristegui J., Gasol, J.M., Lekunberri, I., Herndl, G.J. Mesoscale eddies: hotspots of prokaryotic activity and differential community structure in the ocean. The ISME Journal 4, 975-988.
  3. Baltar, F., Aristegui, J., Gasol, J.M., Herndl, G.J. Prokaryotic carbon utilization in the dark ocean: growth efficiency, leucine-to-carbon conversion factors, and their relation. Aquatic Microbial Ecology 60, 227-232.
  4. Baltar, F., Aristegui, J., Sintes, E., Gasol, J.M., Reinthaler, T., Herndl, G.J. Significance of non-sinking particulate organic carbon and dark CO2 fixation to heterotrophic carbon demand in the mesopelagic northeast Atlantic. Geophysical Research Letters 37, L09602, doi:10.1029/2010GL043105.
  5. Baltar, F., Aristegui, J., Gasol, J.M., Sintes, E., van Aken, H.M., Herndl, G.J. High dissolved extracellular enzymatic activity in the deep central Atlantic Ocean. Aquatic Microbial Ecology 58, 287-302.
  6. Bochdansky, A.B., van Aken, H.M., Herndl, G.J. Role of macroscopic particles in deep-sea oxygen consumption. Proceedings Natural Academy of Science USA 107, 8287-8291.
  7. Boye, M., Nishioka, J., Croot, P., Laan, P., Timmermans, K.R., Strass, V., Takeda S., de Baar, H.J.W. Significant portion of dissolved organic Fe-complexes in fact is Fe colloids. Mar. Chem. Mar. Chem. 122: 20-27
  8. Breitbarth, E., Achterberg, E. P., Ardelan, M.V., Baker, A. R., Bucciarelli, E., Chever, F., Croot, P.L., Duggen, S., Gledhill, M., Hassellöv, M., Hassler, C., Hoffmann, L. J., Hunter, K. A., Hutchins, D. A., Ingri, J., Jickells, T., Lohan, M. C., Nielsdóttir, M. C., Sarthou, G., Schoemann, V., Trapp, J. M., Turner, D. R., Ye, Y. (2010). Iron biogeochemistry across marine systems at changing times – conclusions from the workshop held in Gothenburg, Sweden (14 – 16 May 2008). Biogeosciences, 7: 1075-1097.
  9. De Corte, D., Sintes, E., Winter, C., Yokokawa, T., Reinthaler, T., Herndl, G.J. Links between viral and prokaryotic communities throughout the water column of the tropical Atlantic Ocean. The ISME Journal, 4, 1431-1442.
  10. Fuhr, F, Finke, J., Stehouwer, PP., Oosterhuis, S., Veldhuis, M.  Factors influencing organisms counts in ballast water samples and their implications. WMU Journal of Maritime Affairs 9: 253-261.
  11. Hassler, C.S., Schoemann, V., Nichols, C.A.M., Butler, E.C.V., Boyd P.W. Saccharides enhance iron bioavailability to Southern Ocean phytoplankton. Proceedings of the National Academy of Sciences.
  12. Hoppema, M., Dehairs, F., Navez, J., Monnin, C., Jeandel, C., Fahrbach, E., de Baar, H.J.W. Distribution of barium in the Weddell Gyre: Impact of circulation and biogeochemical processes Marine Chemistry 122 (1-4), pp. 118-129
  13. Jiao, N., Herndl, G.J., Hansell, D.A., Benner, R., Kattner, G., Wilhelm, S.W., Kirchman, D.L., Weinbauer, M.G., Luo, T., Chen, F., Azam, F. Microbial production of recalcitrant dissolved organic matter: long-term carbon storage in the global ocean. Nature Reviews Microbiology 8, 593-599.
  14. Klunder, M.B. , P.Laan, R. Middag, H.J.W. De Baar, J.v.Ooijen. Dissolved Iron in the Southern Ocean (Atlantic Sector). Deep-Sea Research II, doi:10.1016/j.dsr2.2010.10.042
  15. Koski. M. Dutz. J. Klein Breteler, W., Rampen, S, Noordeloos, A. Seasonal changes in food quantity and quality of the common North Sea copepod Temora longicornis and Pseudocalanus elangatusL a bioassay approach. Marine Ecology Progress Series 399,141-155.
  16. Labrenz, M., Sintes, E., Toetzke, F., Zumsteg, A., Seidler, M., Herndl, G.J., Jürgens, K. Relevance of a crenarchaeal subcluster related to Candidatus Nitrosopumilus maritimus for ammonia oxidation in the suboxic zone of the central Baltic Sea. The ISME Journal.
  17. Lamy, D., Agogué, H., Sogin, M.L., Herndl, G.J. Bacterial assemblage composition in the North Atlantic Ocean revealed by massively parallel tag sequencing. Molecular Ecology
  18. Lannuzel, D., Schoemann, V., de Jong, J., Pasquer, B., van der Merwe, P., Masson, F., Tison, J.-L., Bowie, A. Distribution of dissolved iron in Antarctic sea ice: Spatial, seasonal, and inter-annual variability, J. Geophys. Res., 115, G03022, doi:10.1029/2009JG001031.
  19. Lannuzel, D., Bowie, A.R., van der Merwe, P.C., Townsend, A.T., Schoemann, V. Distribution of total dissolved and particulate metals in Antarctic sea ice. Marine Chemistry. Accepted.
  20. Le Clainche, Y., Vezina, A., Levasseur, M., Cropp, R., Gunson, J., Vallina, S., Vogt, M., Lancelot, C., Allen, I., Archer, S., Bopp, L., Deal, C., Elliott, S., Jin, M., Malin, G., Schoemann, V., Simo, R., Six, K., Stefels, J. A first appraisal of prognostic ocean DMS models and prospects for their use in climate models. Global Biogeochem. Cycles, doi:10.1029/2009GB003721.
  21. Lenhart,H-J., D.K. Mills, H. Baretta-Bekker, S.M. van Leeuwen, J. van der Molen, J.W. Baretta, M. Blaas, X. Desmit, W. Kühn, G. Lacroix, H.J. Los, A. Ménesguen, R. Neves, R. Proctor, P. Ruardij,M. D. Skogen, A. Vanhoutte-Brunier, M.T. Villars, S.L. Wakelin. Predicting the consequences of nutrient reduction on the eutrophication status of the North Sea. Journal of Marine Systems, 81: 148-170
  22. Llabres, M., Agusti, S., Alsonso-Laita, P., Herndl, G.J. Synechococcus and Prochlorococcus cell death induced by UV radiation and the penetration of lethal UVR in the Mediterranean Sea. Marine Ecology Progress Series 399, 27-37.
  23. Meador, T.B., Gogou, A., Spyres, G., Herndl, G.J., Krasakopoulou, E., Psarra, S., Yokokawa, T., De Corte, D., Zervakis, V., Repeta, D.J. Correlations between dissolved organic matter chemical composition, the prokaryotic community, and biogeochemical cycles in the Eastern Mediterranean Sea. Deep Sea Research II 57, 1460-1477.
  24. Nagata, T., Tamburini, C., Aristegui, J., Baltar, F., Bochdansky, A., Fonda-Umani, S., Fukuda, H., Gogou, A., Hansell, D.A., Hansman, R.L.,. Herndl, G.J, Panagiotopoulos, C., Reinthaler, T., Sohrin, R., Verdugo P., Yamada, N., Yamashita, Y., Yokokawa, T. Bartlett, D.H. Emerging concepts on microbial processes in the bathypelagic ocean – ecology, biogeochemistry and genomics. Deep Ses Research II 57, 1519-1536.
  25. Patey, M.D., Achterberg, E.P., Rijkenberg, M.J.A., Statham, P.J., Mowlem, M.. Interferences in the analysis of nanomolar concentrations of nitrate and phosphate in oceanic waters. Analitica. Chimica Acta 673, 109-116
  26. Reinthaler, T., van Aken, H.M., Herndl, G.J. Major contribution of autotrophy to microbial carbon cycling in the deep North Atlantic’s interior. Deep Sea Research II 57, 1572-1580.
  27. Sintes, E., Stoderegger, K., Parada, V., Herndl, G.J. Seasonal dynamics dissolved organic matter and microbial activity in the coastal North Sea. Aquatic Microbial Ecology 60: 85-95.
  28. Rijkenberg, M.J.A., and Depree, C.V. Heavy metal stabilization in contaminated road-derived sediments. Science of the Total Environment 408, 1212-1220
  29. Stehouwer, PP, Fuhr, F., Veldhuis, M. A novel approach to determine ballast water vitality and viability after treatment. WMU Journal of Maritime Affairs 9: 241-247.
  30. Stehouwer, P.P.V., Fuhr, F., Veldhuis, M.J.W. A novel approach to determine ballast water vitality and viability after treatment. Ballast water management systems, Proceedings of the IMO-WMU research and development forum 26-29 January 2010
  31. Timmermans, K.R., van der Wagt, B. Variability in cell size, nutrient depletion and growth rates of the Southern Ocean diatom Fragilariopsis kerguelensis (Bacillariophyceae) after prolonged iron limitation. Journal of Phycology 46: 497-506.
  32. Thuróczy, C.-E., Gerringa, L.J.A., Klunder, M., Middag, R., Laan, P., Timmermans, K.R., de Baar, H.J.W.  Speciation of Fe in the eastern North Atlantic Ocean. Deep Sea Research I. 57: 1444-1453.
  33. Ussher, S.J., Achterberg, E.P., Sarthou G., Laan, P., De Baar, H.J.W. and Worsfold, P.J.  Distribution of size fractionated dissolved iron in the Canary Basin. Marine Environmental Research, 70(1), 46-55.
  34. Veldhuis, M, ten Hallers, C., Brutel, F. Fuhr, E.,Finke, J., Stehouwer, PP., van de Star, I.,  van Slooten, C.  Ballast water treatment systems: “ old” and “ new” ones.  WMU Journal of Maritime Affairs 9,213-222.
  35. Yokokawa, T., De Corte, D., Sintes, E., Herndl, G.J. Spatial patterns of bacterial abundance, activity and community composition in relation to water masses in the eastern Mediterranean Sea. Aquatic Microbial Ecology 59. 185-195.
  36. Yang, Y., Motegi, C., Yokokawa, T., Nagata, T., Large–scale distribution patterns of virioplankton in the upper ocean. Aquatic Microbial Ecology 60, 233-246
  37. Yokokawa, T., Nagata, T., Linking bacterial community structure to carbon fluxes in marine environments. Journal of Oceanography 66, 1-12

 

Book chapters

  1. Peperzak L, Huisman J, Galloway TS, Brussaard CPD. Accidental spill detection, sampling, on-board sample work-up and subsequent analysis. In: Timmis, K.N. (ed.). Handbook of hydrocarbon and lipid microbiology, 3473-3488
  2. Peperzak L, Brussaard CPD. Phytoplankton viability assay for oil compounds in water. In: Timmis, K.N. (ed.). Handbook of hydrocarbon and lipid microbiology, 4500-4505.
  3. Brussaard, C.P.D., Peperzak, L., Witte, Y., Huisman, J. An experimental oil spill at sea. In: Timmis, K.N. (ed.). Handbook of hydrocarbon and lipid microbiology, 3492-3501.

 

Ph-D theses

  1. Middag, R. Thesis Dissolved Aluminium and Manganese in the Polar Oceans U Groningen, 237 pp. Cum laude

 

naar boven

2009
  1. Amaro, T., Witte, H., Herndl, G.J., Cunha, M.R., Billett, D.S.M. Deep-sea bacterial communities in sediments and guts of deposit-feeding holothurians in Portuguese canyons (NE Atlantic). Deep Sea Research I 56, 1834-1843.
  2. Aristegui, J., Gasol, J.M., Duarte, C.M., Herndl, G.J. Microbial oceanography of the dark ocean’s pelagic realm. Limnology and Oceanography 54, 1501-1529.
  3. Baltar, F., Arístegui, J., Montero, M.F., Espino, M., Gasol, J.M., Herndl, G.J. Mesoscale variability modulates seasonal changes in the trophic structure of nano- and picoplankton communities across the NW Africa-Canary Islands transition zone. Progress in Oceanography 83, 180-188.
  4. Baltar, F., Aristegui, J., Sintes, E., van Aken, H.M., Gasol, J.M., Herndl, G.J. Prokaryotic extracellular enzymatic activity in relation to biomass production and respiration in the meso- and bathypelagic waters of the (sub)tropical Atlantic. Environmental Microbiology 11, 1998-2014.
  5. Baltar, F., Aristegui, J., Gasol, J.M., Sintes, E., Herndl, G.J. Evidence for dependence of prokaryotic metabolism on suspended particulate organic matter in the dark waters of the subtropical North Atlantic. Limnology Oceanography 54, 182-193.
  6. Bonilla-Findji, O., Herndl, G.J., Gattuso, J.-P., Weinbauer, M.G. Viral and flagellate control of prokaryotic production and community structure in offshore Mediterranean waters. Applied Environmental Microbiology 75, 4801-4812.
  7. Calleja, M.Ll., Duarte, C.M., Prairie, Y., Agusti, S., Herndl, G.J. Evidence for surface organic matter modulation of air-sea CO2 gas exchange. Biogeosciences 6, 1105-1114.
  8. De Corte, D., Yokokawa, T., Varela, M.M., Agogué, H., Herndl, G.J. Spatial distribution of Bacteria and archaea and amoA gene copy numbers throughout the water column of the eastern Mediterranean Sea. The ISME Journal 3, 147-158.
  9. de Goeij, J.M., de Kluijver, A., van Duyl, F.C., Vacelet, J., Wijffels, R. H., de Goeij, A.F.P.M., Cleutjens, J.P.M., Schutte, B. Cell kinetics of the marine sponge Halisarca caerulea reveal rapid cell turnover and shedding. Journal Experimental Biology 212, 3892-3900.
  10. Evans, C., Pearce, I., Brussaard C.P.D. Viral-mediated lysis of microbes and carbon release in the sub-Antarctic and Polar Frontal zones of the Australian Southern Ocean. Environmental Microbiology 11, 2924-2934.
  11. Herfort, L., Kim, J.-H., Coolen, M.J.L., Abbas, B., Schouten, S., Herndl, G.J., Sinninghe Damsté, J.S. Diversity of Archaea and detection of crenarchaeotal amoA genes in the rivers Rhine and Têt. Aquatic Microbial Ecology 55, 189-201.
  12. Maier, C., Hegeman, J., Weinbauer, M.G., Gattuso, J.P. Calcification of the cold-water coral Lophelia pertusa under ambient and reduced pH. Biogeosciences 6, 1671-1680.
  13. Middag, R., de Baar, H.J.W., Laan, P., Bakker, K. Dissolved aluminium and the silicon cycle in the Arctic Ocean. Marine Chemistry 115, 176-195.
  14. Prowe, A.E.F., Thomas, H., Pätsch, J., Kühn, W., Bozec, Y., Schiettecatte, L.-S., Borges, A.V., de Baar, H.J.W. Mechanisms controlling the air–sea CO2 flux in the North Sea. Continental Shelf Research 29, 1801–1808.
  15. Rampen, S.W., Schouten, S., Hopmans, E.C., Abbas, B., Noordeloos, A.A.M., van Bleijswijk, J.D.L., Geenevasen, J.A.J., Sinninghe Damsté, J.S. Diatoms as a source for 4-desmethyl-23,24-dimethyl steroids in sediments and petroleum. Geochimica et Cosmochimica Acta 73, 377-387.
  16. Takahashi, T., Sutherland, S.C., Wanninkhof, R., Sweeney, C., Feely, R.A., Chipman, D.W., Hales, B., Friederich, G., Chavez, F., Sabine, C., Watson, A., Bakker, D.C.E., Schuster, U., Metzl, N., Yoshikawa-Inoue, H., Ishii, M., Midorikawa, T., Nojiri, Y., Kortzinger, A., Steinhoff, T., Hoppema, M., Olafsson, J., Arnarson, T.S., Tilbrook, B., Johannessen, T., Olsen, A., Bellerby, R., Wong, C.S., Delille, B., Bates, N.R., de Baar, H.J.W. Climatological mean and decadal change in surface ocean pCO2, and net sea-air CO2 flux over the global oceans. Deep-Sea Research II, 56, 554-577.
  17. Thomas, H., Schiettecatte, L.-S., Suykens, K.,  Koné, Y.J.M., Shadwick, E.H., Prowe, A.E.F., Bozec, Y., de Baar, H.J.W., Borges, A.V. Enhanced ocean carbon storage from anaerobic alkalinity generation in coastal sediments. Biogeosciences 6, 267–274.
  18. Weijers, J.W.H., Panoto, E., van Bleijswijk, J., Schouten, S., Rijpstra, W.I.C., Balk, M., Stams, A.J.M., Sinninghe Damsté, J.S. Constraints on the biological source(s) of the orphan branched tetraether membrane lipids. Geomicrobiology Journal 26,402-414.
  19. Weinbauer, M.G., Arrieta, J.M., Griebler, C., Herndl, G.J. Enhanced viral production and infection of bacterioplankton during an iron-induced phytoplankton bloom in the Southern Ocean. Limnology Oceanography 54, 774-784.
  20. Wilhartitz, I., Kirschner, A.K.T., Stadler, H., Herndl, G.J., Dietzel, M., Latal, C., Mach, R.L., Farnleitner, A.H. Heterotrophic prokaryotic production in ultraoligotrophic alpine karst aquifers and ecological implications. FEMS Microbial Ecology 68, 287-299.
  21. Zemmelink, H.J., Slagter, H.A., van Slooten, C., Snoek, J., Heusinkveld, B., Elbers, J., Brink, N.J., Klaassen, W., Philippart, C.J.M., de Baar, H.J.W. Primary production and eddy correlation measurements of CO2 exchange over an intertidal estuary. Geophysical Research Letters 36, L19606.
  22. Zhang, Y., Sintes, E., Chen, J., Zhang, Y., Dai, M., Jiao, N., Herndl, G.J. Role of mesoscale cyclonic eddies in the distribution and activity of Archaea and Bacteria in the South China Sea. Aquatic Microbial Ecology 56, 65-79.

 

Book chapters

  1. Brussaard, C.P.D. Enumeration of bacteriophages using flow cytometry. In: Clokie, M.R.J., Kropinski, A.M. (eds). Bacteriophages, Methods in Molecular Biology Volume 1: Isolation, characterization and interactions. Humana Press, New York, 97-112.
  2. Brussaard C.P.D., Weinbauer M.G., Winter C., Payet J.P. Quantification of aquatic viruses by flow cytometry. In: Suttle, C., Wilhelm, S., Weinbauer, M. (eds.). Manual of Aquatic Viral Ecology (MAVE), eBook Americal Society of Limnology and Oceanography, 100-117.
  3. Kimmance S, Brussaard CPD. Estimation of viral-induced phytoplankton mortality using the modified dilution method. Manual of Aquatic Viral Ecology (MAVE), eBook American Society of Limnology and Oceanography (ASLO). SW Wilhelm, WMG Weinbauer, CA Suttle (eds.). Chapter 7: 65-73.
  4. Fox C, Harris R, Sundby S, Achteberg E, Icarus Allen J, Allen J, Baker A, Brussaard CPD, Buckley P, Cook EJ, Dye SR, Edwards M, Fernand L, Kershaw P, Metcalfe J, Østerhus S, Potter T, Sakshaug E, Speirs D, Stenevik E, St. John M, Thingstad F, Wilson B. 2009. Oceanography and Marine Biology: An Annual Review 47, 1-76. R N Gibson, RJA Atkinson, JDM Gordon (Eds). Taylor & Francis. Transregional linkages in the north-eastern Atlantic - an ‘end-to-end ’analysis of pelagic ecosystems.

 

Ph-D theses

  1. de Goeij, J.M. Element cycling on tropical coral reefs: The cryptic carbon shunt revealed. Groningen University, 191 pp.

naar boven

2008
  1. Agogué, H., Brink, M., Dinasquet, J., Herndl, G.J. Major gradients in putatively nitrifying and non-nitrifying Archaea in the deep North Atlantic. Nature 456, 788-791.
  2. Bakker, D.C.E., Hoppema, M., Schroder, M., Geibert, W., de Baar, H.J.W. A rapid transition from ice covered CO2-rich waters to a biologically mediated CO2 sink in the eastern Weddell Gyre. Biogeosciences 5, 1373-1386.
  3. Baudoux, A-C., Brussaard, C.P.D. Influence of irradiance on viral-algal host interactions. Journal of Phycology 44, 902-908.
  4. Baudoux, A-C., Veldhuis, M.J.W., Noordeloos, A.A.M., Brussaard, C.P.D. Estimates of virus vs. grazing induced mortality of picophytoplankton in the North Sea during summer 2003. Aquatic Microbrial Ecology 52, 69-82.
  5. Belviso, S., Bopp, L., Mosseri, J., Tedetti, M., Garcia, N., Griffiths, B., Joux, F., Obernosterer, I., Uitz, J., Veldhuis, M.J.W. Effect of natural iron fertilization on the distribution of DMS and DMSP in the Indian sector of the Southern Ocean. Deep-Sea Research II 55, 893-900.
  6. Brussaard, C.P.D., Martínez Martínez, J. Algal bloom viruses. Plant Viruses. 2,1-13.
  7. Brussaard, C.P.D., Wilhelm, S.W., Thingstad, F., Weinbauer M.G., Bratbak, G., Heldal, M., Kimmance, S.A., Middelboe, M., Nagasaki, K., Paul, J.H., Schroeder, D.C., Suttle, C.A., Vaqué, D., Wommack, K.E. Global-scale processes with a nanoscale drive: the role of marine viruses. The ISME Journal 2, 575-578.
  8. Brussaard, C.P.D.,  Timmermans, K.R., Uitz, J., Veldhuis, M.J.W. Virioplankton dynamics and virally induced phytoplankton lysis versus microzooplankton grazing southeast of the Kerguelen (Southern Ocean). Deep Sea Res II 55, 752-765.
  9. Buesseler, K.O., Doney, S.C., Karl, D.M., Boyd, P.W., Caldeira, K., Chai, F., Coale, K.H., de Baar, H.J.W., Falkowski, P.G., Johnson, K.S., Lampitt, R.S., Michaels, A.F., Naqvi, S.W.A., Smetacek, V., Takeda, S., Watson, A.J. Environment - Ocean iron fertilization - Moving forward in a sea of uncertainty. Science 319, 162.
  10. Christaki, U., Obernosterer, I., Van Wambeke, F., Veldhuis, M., Garcia, N., Catala, P. Microbial food web structure in a naturally iron fertilized area in the Southern Ocean (Kerguelen Plateau). Deep-Sea Research II 55, 706-719.
  11. de Baar, H.J.W., Gerringa, L.J.A., Laan, P., Timmermans, K.R. Efficiency of carbon removal per added iron in ocean iron fertilization. Marine Ecology-Progress Series 364, 269-282.
  12. de Baar, H.J.W., Timmermans, K.R., Laan, P., de Porto, H.H., Ober, S., Blom, J.J., Bakker, M.C., Schilling, J., Sarthou, G., Smit, M.G., Klunder, M. Titan: A new facility for ultraclean sampling of trace elements and isotopes in the deep oceans in the international Geotraces program. Marine Chemistry 111, 4-21.
  13. de Goeij, J.M., Moodley, L., Houtekamer, M., Carballeira, N.M., van Duyl, F.C. Tracing 13C-enriched dissolved and particulate organic carbon in the bacteria containing coral reef sponge Halisarca caerulea: Evidence for DOM-feeding. Limnology and Oceanography 53, 1376-1386.
  14. de Goeij, J.M., van den Berg, H., van Oostveen, M.M., Epping, E.H.G, van Duyl, F.C. Major bulk DOM removal by encrusting coral reef cavity sponges. Marine Ecology Progress Series 357, 139-151.
  15. Estrada, M., Sala, M.M., van Lenning, K., Alvaraz, M., Felipe, J., Veldhuis, M.J.W. Biological interactions in enclosed plankton communities including Alexandrium catanella and copepods: role of phosphorus. Journal of Experimental Marine Biology and Ecology 355, 1-11.
  16. Gasol, J.M., Pinhassi, J., Alonso-Sáez, L., Ducklow, H., Herndl, G.J., Koblizek, M., Labrenz, M., Luo, Y., Moran, X.A.G., Reinthaler, T., Simon, M. Towards a better understanding of the microbial carbon flux in the sea. Aquatic Microbial Ecology 53, 21-38.
  17. Gerringa, L.J.A., Blain, S., Laan, P., Sarthou, G., Veldhuis, M.J.W, Viollier, E., Timmermans, K.R. Fe-binding dissolved organic ligands near the Kerguelen Archipelago in the Southern Ocean (Indian sector). Deep Sea Research II 55, 606-621.
  18. Grote, J., Jost, G., Labrenz, M., Herndl, G.J., Jürgens K. Epsilon-proteobacteria represent the major portion of chemoautotrophic bacteria in sulfidic waters of pelagic redoxclines of the Baltic and Black Seas. Applied Environmental Microbiology 74, 7546-7551.
  19. Herndl, G.J., Agogué, H., Baltar, F., Reinthaler, T., Sintes, E., Varela, M.M. Regulation of aquatic microbial processes: the ‘microbial loop of the sunlit surface waters and the dark ocean dissected. Aquatic Microbial Ecology 53, 59-68.
  20. Iglesias-Rodriguez, M.D., Buitenhuis, E.T., Raven, J.A., Schofield, O., Poulton, A.J., Gibbs, S., Halloran, P.R., de Baar, H.J.W. Response to Comment on "Phytoplankton Calcification in a High-CO2 World". Science 322.
  21. Kitazawa, D., Tabeta, S., Kato, K., Ruardij, P. A comparative study of the biomass-based and individual-based models of blue mussels. Journal of Ecological Modelling 215, 93-104.
  22. Lymer, D., Logue, J.B., Brussaard, C.P.D., Baudoux, A-C., Vrede, K., Lindström, E.S. Temporal variation in freshwater viral and bacterial community composition. Freshwater Biology 53, 1163-1175.
  23. Maier, C. High recovery potential of the cold-water coral Lophelia pertusa. Coral Reefs 27, 821.
  24. Paisse, S., Coulon, F., Goñi-Urriza, M.S., Peperzak, L., McGenity T.J., Duran, R. Changes in sediment-associated bacterial communities along a hydrocarbon contamination gradient in coastal environment. FEMS Microbiology Ecology 66, 295-305.
  25. Parada, V., Baudoux, A.-C., Sintes, E., Weinbauer, M.G., Herndl G.J. Dynamics and diversity of newly produced virioplankton in the North Sea. The ISME Journal 2, 924-936.
  26. Reinthaler, T., Sintes, E., Herndl, G.J. Dissolved organic matter and bacterial production and respiration in the sea-surface microlayer of the open Atlantic and the western Mediterranean Sea. Limnology and Oceanography 53, 122-136.
  27. Rijkenberg, M.J.A., Gerringa, L.J.A., Timmermans, K.R., Fischer, A.C., Kroon, K.J., Buma, A.G.J., Wolterbeek, B.Th., de Baar H.J.W. Enhancement of the reactive iron pool by marine diatoms. Marine Chemistry 109, 29-44.
  28. Sarthou, G., Vincent, D., Christaki, U., Obernosterer, I., Timmermans, K.R., Brussaard C.P.D. The fate of biogenic iron during a phytoplankton bloom induced by natural fertilization: impact of copepod grazing. Deep Sea Research II 55, 734-751.
  29. Thomas, H., F. Prowe, S. van Heuven, Y. Bozec, H.J.W. de Baar, L.S. Schiettecatte, K. Suykens, M. Koné, A.V. Borges, I.D. Lima & S.C. Doney. Rapid decline of the CO2 buffering capacity in the North Sea and implications for the North Atlantic Ocean. Global Biogeochemical Cycles 21: GB4001, doi:10.1029/2006GB002825      
  30. Timmermans, K.R., Veldhuis M.J.W., Laan, P., Brussaard, C.P.D. Probing natural iron fertilization near the Kerguelen (Southern Ocean) using natural phytoplankton assemblages and diatom cultures. Deep Sea Research II 55, 693-705.
  31. Timmermans, K.R., van der Woerd, H.J., Wernand, M., Sligting, M., Uitz, J., de Baar, H.J.W. In situ and remote sensed Chlorophyll fluorescence as indicator of the physiological state of phytoplankton near the Isles Kerguelen (Southern Ocean). Polar Biology 31, 617-628.
  32. van Duyl, F.C., Hegeman, J., Hoogstraten, A., Maier, C.  Dissolved carbon fixation by sponge-microbe consortia of deep water coral mounds in the northeastern Atlantic Ocean. Marine Ecology Progress Series 358, 137-150.
  33. Varela, M.M., van Aken, H.M., Herndl, G.J. Abundance and activity of Chloroflexi-type SAR202 bacterioplankton in the meso- and bathypelagic waters of the (sub)tropical Atlantic. Environmental Microbiology 10, 1903-1911.
  34. Varela, M.M., van Aken, H.M., Sintes, E., Herndl, G.J. Latitudinal trends of Crenarchaeota and Bacteria in the meso- and bathypelagic water masses of the Eastern North Atlantic. Environmental Microbiology 10, 110-124.
  35. Winter, C., Moeseneder, M.M., Herndl, G.J., Weinbauer, M.G. Relationship of geographic distance, depth, temperature, and viruses with prokaryotic communities in the eastern tropical Atlantic Ocean. Microbial Ecology 56, 383-389.
  36. Wong, G.T.F., Anderson, R.F., Bacon, M.P., de Baar, H.J.W., Murray, J.W., Scranton, M.I. A tribute to Peter George Brewer in celebration of his 65th birthday. Marine Chemistry 111, 1-3.
  37. Zemmelink, H.J., Houghton, L., Dacey, J.W.H.,  Stefels, J., Koch, B.P., Schröder, M., Wisotzki, A., Scheltz, A., Thomas, D.N., Papadimitriou, S., Kennedy, H., Kuosa, H. , Dittmar, T. Stratification and the distribution of phytoplankton, nutrients, inorganic carbon, and sulfur in the surface waters of Weddell Sea leads, Deep Sea Research II 55, 988-999.

 

Book chapters

  1. Nagasaki, K., Brussaard, C.P.D. Algal Viruses. In: Mahy, B.W.J. , van Regenmortel, M.H.V. (eds.). Encyclopedia of Virology 5. Elsevier, Oxford, UK, 97-105.

naar boven

2007
  1. Agawin, N.S.R., S. Rabouille, M.J.W. Veldhuis, L. Servatius, S. Hol, M.J. van Overzee & J. Huisman. Competition and facilitation between unicellular nitrogen-fixing cyanobacteria and non-nitrogen-fixing phytoplankton species. Limnol. Oceanogr. 52: 2233 – 2248.
  2. Arrieta, J.M., M.G. Weinbauer & G.J. Herndl. Response to “Interpreting the results of oceanic mesoscale enrichment experiments: caveats and lessons from limnology and coastal ecology” by M.S. Hale and R.B. Rivkin. Limnol. Oceanogr. 52: 916-918.
  3. Baudoux A.-C., M.J.W. Veldhuis, H.J. Witte & C.P.D. Brussaard. Viruses as mortality agents of picophytoplankton in the deep chlorophyll maximum layer during IRONAGES III. Limnol. Oceanogr. 52: 2519-2529.
  4. Blain, S., B. Queguiner, L. Armand, S. Belviso, B. Bombled, L. Bopp, A. Bowie, C. Brunet, C. Brussaard, F. Carlotti, U. Christaki, A. Corbiere, I. Durand, F. Ebersbach, J-L. Fuda, N. Garcia, L. Gerringa, B. Griffiths, C. Guigue, C. Guillerm, S. Jacquet, C. Jeandel, P. Laan, D. Lefevre, C. LoMonaco, A. Malits,  J. .Mosseri, I. Obernosterer, Y-H. Park, M. Picheral, P. Pondaven, T. Remenyi, V. Sandroni, G. Sarthou, N. Savoye, L. Scouarnec, M. Souhaut, D. Thuiller, K. Timmermans, T. Trull, J. Uitz, P. van Beek, M. Veldhuis, D. Vincent, E. Viollier, L. Vong & T. Wagener. 2007. Effect of natural iron fertilization on carbon sequestration in the Southern Ocean. Nature 446: 1070-1074.
  5. Boyd, P., T. Jickells, C. Law, S. Blain, E. Boyle, K. Buesseler, K. Coale, J. Cullen, H. de Baar, M. Follows, M. Harvey, C. Lancelot, M. Levasseur, R. Pollard, R. Rivkin, J. Sarmiento, V. Schoemann, V. Smetacek, S. Takeda, A. Tsuda, S. Turner, A.Watson. Mesoscale iron-enrichment experiments 1993-2005: Science 315: 612-617.
  6. Brussaard, C.P.D., G. Bratbak, A.-C. Baudoux & P. Ruardij. Phaeocystis and its interaction with viruses. Biogeochemistry 83: 201-215.
  7. Carlson, C.A., P.A. Del Giorgio & G.J. Herndl. Microbes and the dissipation of energy and respiration: from cells to ecosystems. Oceanography 20: 89-100.
  8. Coolen, M.J.L., B. Abbas, J. van Bleijswijk, E.C. Hopmans, M.M.M. Kuypers, S.G. Wakeham, J.S. Sinninghe Damsté. Putative ammonia-oxidizing Crenarchaeota in suboxic waters of the Black Sea: a basin-wide ecological study using 16S ribosomal and functional genes and membrane lipids. Environ. Microbiol. 9: 1001-1016.
  9. de Goeij, J.M. & F.C. van Duyl. Coral cavities are sinks of dissolved organic carbon (DOC). Limnol. Oceanogr. 52: 2608-2617.
  10. de Jong, J.T.M., M. Boyé, M.D. Gelado-Caballero, K.R. Timmermans, M.J.W. Veldhuis, R.F. Nolting, C.M.G. van den Berg & H.J.W. de Baar. Inputs of iron, manganese and aluminium to surface waters of the Northeast Atlantic Ocean and the European continental shelf. Mar. Chem. 107: 120–142.
  11. Herfort, L., S. Schouten, B. Abbas, M.J.W. Veldhuis, M.J.L. Coolen, C. Wuchter, J.P. Boon, G.J. Herndl & J.S. Sinninghe Damsté. Variation in spatial and temporal distribution of Archaea in the North Sea in relation to environmental variables. FEMS Microbology Ecology 62: 242–257.
  12. Hoppema, M., R. Middag, H.J.W. de Baar, E. Fahrbach, E.M. van Weerlee & H. Thomas. Whole season net community production in the Weddell Sea. Polar Biology 31: 101-111.
  13. Koski, M. High reproduction of Calanus finmarchicus during a diatom-dominated spring bloom. Mar. Biol. 151: 1785-1798.
  14. Nejstgaard J.C., K.W. Tang, M. Steinke, J. Dutz, M. Koski, E. Antajan & J.D. Long. Zooplankton grazing on Phaeocystis: a quantitative review and future challenges. Biogeochemistry 83: 147-172.
  15. Parada, V., E. Sintes, H.M. van Aken, M.G. Weinbauer & G.J. Herndl. Viral abundance, decay and diversity in the meso- and bathypelagic waters of the North Atlantic. Appl. Environ. Microbiol. 73: 4429-4438.
  16. Staal, M., S. te Lintel Hekkert, G.-J. Brummer, M. Veldhuis, C. Sikkens, S. Persijn & L.J. Stal. Nitrogen fixation along a north-south transect in the eastern Atlantic Ocean. Limnol. Oceanogr. 52: 1305-1316.
  17. Stoica, E. & G.J. Herndl. Bacterioplankton community composition in nearshore waters of the NW Black Sea coast during consecutive diatom and coccolithophorid blooms. Aquat. Sci. 69: 413-418.
  18. Stoica, E. & G.J. Herndl. Contribution of Crenarchaeota and Euryarchaeota to the prokaryotic plankton in the coastal northwestern Black Sea. J. Plankton Res. 29: 699-706.
  19. Thor, P., M. Koski, K. Tang & S. Jónasdóttir. Supplemental effects of diet mixing on absorption of ingested organic carbon in the marine copepod Acartia tonsa. Mar. Ecol. Prog. Ser. 331: 131-138.
  20. Timmermans K.R., M.J.W. Veldhuis & C.P.D. Brussaard. Cell death in three marine diatom species in response to different irradiance levels, silicate or iron concentrations. Aquat. Microb. Ecol. 46: 253-261.
  21. van Soest, R.W.M., D. Cleary, M.J. de Kluijver, M.M.S. Lavaleye, C. Maier & F.C. van Duyl. Sponge diversity in bathyal coral reefs W of Ireland examined at different scales reveals heterogeneity in time and space. Contributions to Zoology 76: 121-142. 
  22. Veldhuis, M.J.W. & K.R. Timmermans. Phytoplankton dynamics during an in situ iron enrichment experiment (EisenEx) in the Southern Ocean: a comparative study of field and bottle incubation measurements. Aquat. Microbiol. Ecol. 47: 191–208.
  23. Verity, P., C.P.D. Brussaard, J.C. Njestgaard, M.A. van Leeuwe, C. Lancelot & L.K. Medlin. Current understanding of Phaeocystis ecology and biogeochemistry, and perspectives for future research. Biogeochemistry 83: 311-330.
  24. Wilhartitz, I., R. Mach, E. Teira, T. Reinthaler, G.J. Herndl & A. Farnleitner. Prokaryotic community analysis with CARD-FISH in comparison to FISH in ultra-oligotrophic ground- and drinking water. J. Appl. Microbiol. 103: 871-881.
  25. Zappa C.J., W.R. McGillis, P.A. Raymond, J.B. Edson, E.J. Hintsa, H.J. Zemmelink, J.W.H. Dacey & D.T. Ho. Environmental turbulent mixing controls on air-water gas exchange in marine and aquatic systems. Geophys. Res. Lett. 34:  L10601, doi:10.1029/2006GL028790.    

 

Ph-D theses

  1. Baudoux, A.-C. The role of viruses in marine phytoplankton mortality. Groningen University, 148 pp.

naar boven

2006
  1. Alderkamp, A.-C., E. Sintes & G.J. Herndl. Abundance and activity of major groups of prokaryotic plankton in the coastal North Sea during spring and summer. Aquat. Microb. Ecol. 45: 237-246.
  2. Attoui H., F. Mohd Jaafar, M. Belhouchet, P. de Micco, X. de Lamballerie & C.P.D. Brussaard. Micromonas pusilla reovirus: a new member of the family Reoviridae assigned to a novel proposed genus (Mimoreovirus). J. Gen. Virology 87: 1375-1383.
  3. Baudoux, A.C., A.A.M. Noordeloos, M.J.W. Veldhuis & C.P.D. Brussaard. Virally induced mortality of Phaeocystis globosa during two spring blooms in temperate coastal waters. Aquat. Microb. Ecol. 44: 207-217.
  4. Blauw, A.N., P. Anderson, M. Estrada, M. Johansen, J. Laanemets, L. Peperzak, D. Purdie, R. Raine & E. Vahtera. The use of fuzzy logic for data analysis and modelling of European harmful algal blooms: results of the HABES project. African Journal of Marine Science 28: 365-369.
  5. Bowie, A., E. Achterberg, P. Croot, H. de Baar, P. Laan, J. Moffett, S. Ussher &  P. Worsfold. A community-wide intercomparison exercise for determination of dissolved iron in seawater. Mar Chem. 98: 81-99.
  6. Boye, M., A. Aldrich, C.M.G. van den Berg, J.T.M. de Jong, H. Nirmaier, M.J.W. Veldhuis, K.R. Timmermans & H.J.W. de Baar. The chemical speciation of iron in the north-east Atlantic Ocean. Deep Sea Res. I 53: 667-683.
  7. Bozec, Y., H. Thomas, L.-S. Schiettecatte, A.V. Borges, K. Elkalay & H.J.W. de Baar.  Assessment of the processes controlling the seasonal variations of dissolved inorganic carbon in the North Sea. Limnol. Oceanogr. 51: 2746–2762.
  8. Dutz, J. & M. Koski. Trophic significance of solitary cells of the prymnesiophyte Phaeocystis globosa depends on cell type. Limnol. Oceanogr. 51: 1230-1238.
  9. Fischer, A.C., H.Th. Wolterbeek,  J.J. Kroon,  L.J.A. Gerringa, T.G. Verburg, K.R. Timmermans, J.T. van Elteren & T. Teunissen. On the use of iron radio-isotopes to study iron speciation kinetics in seawater: A column separation and off-line counting approach. Science of the Total Environment 362: 242-258.
  10. Franklin, D.J., C.P.D. Brussaard & J.A. Berges. Review: What is the role and nature of programmed cell death in phytoplankton ecology? Eur. J. Phycol. 41: 1-14.
  11. Gerringa, L.J.A., M.J.W. Veldhuis, K.R. Timmermans, G. Sarthou & H.J.W. de Baar. Co-variance of dissolved Fe-binding ligands with biological observations in the Canary Basin. Mar Chem. 102: 276-290.
  12. Hoffmann, L.J., I. Peeken, K. Lochte, P. Assmy & M. Veldhuis. Different reactions of Southern Ocean phytoplankton size classes to iron fertilization. Limnol. Oceanogr.  51: 1217 - 1229
  13. Joux, F., H. Agogue, I. Obernosterer, C. Dupuy, T. Reinthaler, G.J. Herndl & P. Lebaron. Microbial community structure in the sea surface microlayer at two contrasting sites in the Northwestern Mediterranean Sea. Aquat. Microb. Ecol. 42: 91-104.
  14. Koski, M., W. Klein Breteler, N. Schogt, S. Gonzalez & H.H. Jakobsen. Life-stage-specific differences in exploitation of food mixtures: diet mixing enhances copepod egg production but not juvenile development. J. Plankton Res. 28: 919-936.
  15. Lawrence, J.E., C.P.D. Brussaard & C.A. Suttle. Virus-specific responses of Heterosigma akashiwo to infection. Appl. Environm. Microb. 72:7829-7834
  16. Parada, V., G.J. Herndl & M.G. Weinbauer. Viral burst size of heterotrophic prokaryotes in aquatic systems. J. Mar. Biol. Ass. UK 86: 613-621.
  17. Peperzak, L. Below the Kolmogorov scale: the non-turbulent sex-life of phytoplankton. African Journal of Marine Science 28: 261-264
  18. Peperzak, L. Modelling vegetative growth, gamete production and encystment of dinoflagellates in batch culture. Mar. Ecol. Prog. Ser. 306: 143-152.
  19. Reinthaler, T., H. van Aken, C. Veth, P. leB Williams, J. Aristegui, C. Robinson, P. Lebaron & G.J. Herndl. Prokaryotic respiration and production in the meso- and bathypelagic realm of the eastern and western North Atlantic basin. Limnol. Oceanogr. 51: 1262-1273.
  20. Reinthaler, T., K. Bakker, R. Manuels, J. van Ooijen & G.J. Herndl. Fully automated spectrophotometric approach to determine oxygen concentrations in seawater via continuous-flow analysis. Limnol. Oceanogr., Methods 4: 358-366.
  21. Rijkenberg, M.J.A., L.J.A. Gerringa, I. Velzeboer, K.R. Timmermans, A.G.J. Buma &  H.J.W. de Baar. Iron-binding ligands in Dutch estuaries are not affected by UV induced photochemical degradation. Mar. Chem. 100: 11-23.
  22. Rijkenberg, M.J.A., L.J.A. Gerringa, V.E. Carolus, I. Velzeboer & H.J.W. de Baar. Enhancement and inhibition of iron photoinhibition by individual ligands in open ocean seawater. Geochim. Cosmochim. Acta 70: 2790-2805.
  23. Sintes, E. & G.J. Herndl. Quantifying substrate uptake of individual cells of marine bacterioplankton populations by catalyzed reporter deposition fluorescence in situ hybridization combined with microautoradiography. Appl. Environ. Microbiol. 72: 7022-7028.
  24. Sogin, M.L., H.G. Morrison, J.A. Huber, D.M. Welch, S.M. Huse, J.M. Arrieta & G.J. Herndl. Microbial diversity in the deep sea and the under-explored “rare biosphere”. Proc. Natl. Acad. Sci. USA, 103: 12115-12120.
  25. Teira, E., H.M. van Aken, C. Veth & G.J. Herndl. Archaeal uptake of enantiomeric amino acids in the meso- and bathypelagic waters of the North Atlantic. Limnol. Oceanogr. 51: 60-69.
  26. Teira, E., P. Lebaron, H.M. van Aken & G.J. Herndl. Distribution and activity of Bacteria and Archaea in the deep water masses of the North Atlantic. Limnol. Oceanogr., 51: 2131-2144.
  27. Van Duyl, F.C., S.R. Scheffers, F.I.M. Thomas & M. Driscoll. The effect of water exchange on bacterioplankton depletion and inorganic nutrient dynamics in coral reef cavities. Coral Reefs 25: 23-36.
  28. Veldhuis, M.J.W., F. Fuhr, J.P. Boon & C.T. Hallers-Tjabbes: Treatment of ballast water: how to test a system with a modular concept? Environ. Technol. 27: 909-921.
  29. Verspagen, J.M.H., J. Passarge, K.D. Jöhnk, P.M. Visser, L. Peperzak, P. Boers, R. Laanbroek & J. Huisman. Water management strategies against toxic Microcystis blooms in the Dutch delta. Ecol. Applic. 16: 313-327.
  30. Wuchter, C., B. Abbas, M.J.L. Coolen, L. Herfort, J. van Bleijswijk, P. Timmers, M. Strous, E. Teira, G.J. Herndl, J.J. Middelburg, S. Schouten & J.S. Sinninghe Damsté. Archaeal nitrification in the ocean. Proc. Natl. Acad. Sci. USA, 103: 12317-12322.
  31. Zemmelink H.J., L. Houghton, N.M. Frew & J.W.H. Dacey. Dimethylsulfide and major sulfur compounds in a stratified coastal salt pond. Limnol. Oceanogr. 51: 271-279.
 

Book chapters

  1. Arrieta, J.M & G.J. Herndl. Prokaryotic ectoenzyme activity in surface waters of the Mediterranean. In: F. Briand (ed.). Production and fate of dissolved organic matter in the Mediterranean Sea. CIESM workshop Monographs nr. 28, 63-66.
  2. Obernosterer, I., G.J. Herndl & P. Lebaron. Bacterial heterotrophic activity in the sea surface microlayer of the coastal Mediterranean Sea. In: F. Briand (ed.). Production and fate of dissolved organic matter in the Mediterranean Sea. CIESM workshop Monographs nr. 28, 81-84.
  3. Peperzak, L. and S. Dyhrman. From Microscope to Magnet: Probing Phytoplankton Population Structure and Physiology Using Mammalian Antibodies. In: D.V. Subba Rao (ed.). Algal cultures, analogues and blooms. Science Publishers, Enfield USA: 839-864.
  4. Veldhuis, M.J.W. & C.P.D. Brussaard. Harmful algae and cell death. In: Granéli, E. & J.T. Turner (eds). Ecology of Harmful Algae. Ecological studies 189. Springer-Verlag, Berlin, pp. 153 - 162.
 

 Ph-D theses

  1.  Reinthaler, T. Prokaryotic respiration and production in the open ocean. Groningen University, 128 pp.

 

naar boven

2005
  1. Agogue, H., E. Casamayor, M. Bourrain, I. Obernosterer, F. Joux, G.J. Herndl & P. Lebaron. A survey on bacteria inhabiting the sea surface microlayer of coastal ecosystems. FEMS Microb. Ecol. 
  2. Besemer, K., M.M. Moeseneder, J.M. Arrieta, G.J. Herndl & P. Peduzzi. Complexity of bacterial communities in a river-floodplain system (Danube, Austria). Appl. Environ. Microbiol. 71: 609-620.
  3. Bakker D.C.E, Y. Bozec, P.D. Nightingale, L. Goldson, M.-J. Messias, H.J.W. De Baar, M. Liddicoat, I. Skjelvan, V. Strass & A.J. Watson. Iron and mixing affect biological carbon uptake in SOIREE and EisenEx, two Southern Ocean iron fertilisation experiments. Deep Sea Research Part I 52: 1001-1019.
  4. Baudoux, A.-C. & C.P.D. Brussaard. Characterization of different viruses infecting the marine harmful algal bloom species Phaeocystis globosa. Virology 341: 80-90.
  5. Bozec Y., D.C.E. Bakker, C. Hartman, H. Thomas, R. Bellerby, U. Riebesell, H.J.W. De Baar & A.J. Watson. The CO2 system in a Redfield context during an iron enrichment experiment in the Southern Ocean. Marine Chemistry 95: 89-105.
  6. Bozec Y.,H. Thomas, K. Elkalay & H.J.W. De Baar. The continental shelf pump for CO2 in the North Sea-evidence from summer observation. Marine Chemistry 93: 131-147.
  7. Boyé, M., J. Nishioka, P.L. Croot, P. Laan, K.R. Timmermans & H.J.W. De Baar. Major deviations of iron complexation during 22 days of a mescoscale iron enrichment in the open Southern Ocean. Marine Chemistry 96: 257-271.
  8. Brussaard, C.P.D., B. Kuipers, & M.J.W. Veldhuis. A mesocosms study of Phaeocystis globosa population dynamics. I. Regulatory role of viruses in bloom control. Harmful Algae 4: 859-874.
  9. Brussaard, C.P.D., X. Mari, J.D.L. Van Bleijswijk, & M.J.W. Veldhuis. A mesocosm study of Phaeocystis globosa population dynamics. II. Signficance for the microbial community. Harmful Algae 4: 875-893.
  10. Croot P.L., P. Laan, J. Nishioka, V. Strass,  M. Boyé, K.R. Timmermans, R.G. Bellerby, L. Goldson, P. Nightingale & H.J.W. De Baar. Spatial and Temporal distribution of Fe(II) and H2O2 dur): 65-88.
  11. Dachs, J., M.L. Calleja, C.M. Duarte, S. De Vento, B. Turpin, A. Polidori, G.J. Herndl & S. Agusti. High atmosphere-ocean exchange of organic carbon in the NE subtropical Atlantic. Geophys. Res. Lett.32:  L21807.
  12. De Baar, H., P.W. Boyd, K.H. Coale, M.R. Landry, A. Tsuda, Ph Assmy, D.C.E. Bakker, Y. Bozec, R.T. Barber, M. Brzezinski, K.O. Buesseler, M. Boyé, P.L. Croot, F. Gervais, M.Y. Gorbunov, P.J. Harrison, WT. Hiscock, P.L. Laan, Ch. Lancelot, C. Law, M. Levasseur, A. Marchetti, F.J. Millero, J. Nishioka, Y. Nojiri, T. Van Oijen, U. Riebesell, M.J.A. Rijkenberg, H. Saito, S. Takeda, K.R. Timmermans, M.J.W. Veldhuis, A Waite, & C.S. Wong. Synthesis of 8 Iron Fertilizations exeperiments: from the Iron Age in the Age of Enlightenment. In: Orr, J. C., S. Pantoja, and H.-O. Pörtner (eds.) The Oceans in High CO2 World, Special Issue of J. Geophys. Res. (Oceans) 110 (C9): C09S16, doi:10.1029/2004JC002601.
  13. Dutz, J., W.C.M. Klein Breteler & G. Kramer. Inhibition of copepod feeding by exudates and transparent exopolymer particles (TEP) derived from a Phaeocystis globosa dominated phytoplankton community. Harmful Algae 4: 929-940.
  14. Ellwood, M.J., C.M.G. Van Den Berg, M. Boyé, M. Veldhuis, J.T.M. De Jong, H.J.W. De Baar, P.L. Croot & G. Kattner. Organic complexation of cobalt across the Antarctic Polar Front in the Southern Ocean. Marine and Freshwater Research 56: 1069 - 1075.
  15. Farnleitner, A.H., I. Wilhartitz, G. Ryzinska, A.K.T. Kirschner, H. Stadler, M.M. Burtscher, R. Hornek, U. Szewzyk, G.J. Herndl & R.L. Mach. Bacterial dynamics in spring water of alpine karst aquifers indicates the presence of stable autochthonous microbial endokarst communities. Environ. Microbiol. 7: 1248-1259.
  16. Fischer A.C., H.Th. Wolterbeek., J.J. Kroon, L.J.A. Gerringa, K.R. Timmermans, J.T. Van Elteren & T. Teunissen. On the use of iron radio-isotopes to study iron speciation kinetics in seawater: A column separation and off-line counting approach.
  17. Herndl, G.J., T. Reinthaler, E. Teira, H. Van Aken, C. Veth, A. Pernthaler & J. Pernthaler. Contribution of Archaea to total prokaryotic production in the deep Atlantic Ocean. Appl. Environ. Microbiol. 71: 2303-2309.
  18. Jacobsen, A., Veldhuis, M.J.W. Growth characteristics of flagellated cells of Phaeocystis pouchetii revealed by diel changes in cellular DNA content; effects of different day lengths, light intensities, N:P ratios and temperature. Harmful Algae 4: 811 - 821.
  19. Kaandorp, J.A., P.M.A. Sloot,  R.M.H. Merks, R.P.M. Bak, M.J.A. Vermeij & C. Maier. Morphogenesis of the branching reef coral Madracis mirabilis, Proc. R. Soc. Lond., B, 272 (1559):127-133.
  20. Kramer, G.D., C. Pausz & G.J. Herndl. Elemental composition of dissolved organic matter and bacterioplankton production in the Faroe-Shetland Channel of the North Atlantic. Deep Sea Res. I, 52: 85-97.
  21. Koski, M., J. Dutz & W.C.M. Klein Breteler. Selective grazing of Temora longicornis in different stages of a Phaeocystis globosa bloom – a mesocosm study. Harmful Algae 4: 915-927.
  22. Mari, X., F. Rassoulzadegan, C.P.D. Brussaard & P. Wassmann. Dynamics of transparent exopolymeric particles (TEP) production by Phaeocystis globosa under N- or P-limitation: a controlling factor of the retention/export balance? Harmful Algae 4: 895-914.
  23. Martinez-Alonso, M., J. Van Bleijswijk, N. Gaju, G. Muyzer. Diversity of anoxygenic phototrophic sulfur bacteria in the microbial mats of the Ebro Delta: a combined and morphological and molecular approach. Fems Microbiology Ecology 52 (3): 339.
  24. Moeseneder, M.M., J.M. Arrieta & G.J. Herndl. A comparison of DNA- and RNA-based clone libraries from the same marine bacterioplankton community. FEMS Microb. Ecol. 51: 341-352.
  25. Nishioka, J., S. Takeda, H. J. W. De Baar, P. Laan, P.L. Croot, M. Boyé, P. Laan & K. R. Timmermans. Changes in the concentration of iron in different size fractions during an iron enrichment experiment in the open Southern Ocean, EisenEx. Marine Chemistry 95: 51-63.
  26. Obernosterer, I., P. Catala, T. Reinthaler, G.J. Herndl & P. Lebaron. Enhanced heterotrophic activity in the surface microlayer of the Mediterranean Sea. Aquat. Microb. Ecol. 39: 293-302.
  27. Pirker, H., C. Pausz, K.E. Stoderegger & G.J. Herndl. Simultaneous measurement of metabolic activity and membrane integrity in marine bacterioplankton determined by confocal laser-scanning microscopy. Aquat. Microb. Ecol. 39: 225-233.
  28. Reinthaler, T., C. Winter & G.J. Herndl. Relation between bacterioplankton richness, respiration, and production in the southern North Sea. Appl. Environ. Microbiol. 71: 2260-2266.
  29. Reinthaler, T. & G.J. Herndl. Seasonal dynamics of bacterial growth efficiencies in relation to phytoplankton in the Southern North Sea. Aquat. Microb. Ecol. 39: 7-16.
  30. Rijkenberg, M.J.A., A.C. Fischer, J.J. Kroon, , L.J.A. Gerringa, K.R. Timmermans, H.Th. Wolterbeek & H.J.W De Baar. The influence of UV irradiation on the photoreduction of iron in the Southern Ocean.  Marine Chemistry 93: 119-129.
  31. Rijkenberg, M. J.A., L. J.A. Gerringa, I. Velzeboer, K. R. Timmermans, A.G.J. Buma & H. J.W. De Baar. Iron-binding ligands in Dutch estuaries are not affected by UV induced photochemical degradation" In  Press Marine Chemistry.
  32. Ruardij, P., M.J.W. Veldhuis & C.P.D. Brussaard. Modelling bloom dynamics of the polymorphic phytoplankter Phaeocystis globosa: impact of grazers and viruses. Harmful Algae 4: 941-963.
  33. Sarthou, G., K.R. Timmermans, S. Blain, & P. Tréguer. Growth physiology and the fate of diatoms in the Ocean: a review. J. Sea Res. 53: 25-42.
  34. Scheffers, S.R., G.N. Nieuwland, R.P.M. Bak & F.C. Van Duyl. Why is bacterioplankton growth in coral cavities enhanced? Mar. Ecol. Prog. Ser. 299: 89-99.
  35. Solé, J., E. García-Ladona, P. Ruardij and M. Estrada. Modelling allelopathy among marine algae. Ecological Modelling 183: 373-384.
  36. Stoderegger, K.E & G.J. Herndl. Dynamics in bacterial surface properties of a natural bacterial community in the coastal North Sea during a spring phytoplankton bloom. FEMS Microb. Ecol. 53: 285-294.
  37. Thomas H., Y. Bozec, H.J.W. De Baar, K. Elkalay, M. Frankignoulle, L.-S. Schiettecatte & A. V. Borges. The Carbon budget of the North Sea. Biogeosciences 2: 82-96.
  38. Timmermans, K.R. , B. Van Der Wagt, M.J.W. Veldhuis, A. Maatman & H.J.W. De Baar. Physiological responses of three species of picophytoplankton to nitrogen, phosphorus, iron and light limitation. J. Sea Res. 53: 109-120.
  39. Van Oijen, T., M.J.W.Veldhuis, M.Y. Gorbunov, J. Nishioka, M.A. Van Leeuwe & H.J.W. De Baar. Enhanced carbohydrate production by Southern Ocean phytoplankton in response to in situ iron fertilisation. Marine Chemistry 93(1), 33-52.
  40. Veldhuis, M.J.W., H.J.W. De Baar. Iron resources and oceanic nutrients: advancement of global environment simulations. J. Sea Res. 53: 1 - 6.
  41. Veldhuis, M.J.W., K.R Timmermans, P.L. Croot & B. Van Der Wagt. Picophytoplankton; a comparative study of their biochemical composition and photosynthetic properties. J Sea Res. 53: 7 - 24.
  42. Veldhuis, M.J.W. & P. Wassmann. Bloom dynamics and biological control of high biomass HAB species in European coastal waters: A Phaeocystis case study. Harmful Algae 4: 805 – 809.
  43. Veldhuis, M.J.W., C.P.D. Brussaard & A.A.M. Noordeloos. Living in a Phaeocystis colony; a way to be a successful algal species. Harmful Algae 4: 841-858.
  44. Winter, C., A. Smit, T. Szöke-Dénes, G.J. Herndl & M.G. Weinbauer. Modeling viral impact on bacterioplankton in the North Sea using artificial neural networks. Environ. Microbiol. 7: 881-893.
  45. Winter, C., A. Smit, G.J. Herndl & M.G. Weinbauer. Linking prokaryotic richness with viral abundance and prokaryotic activity. Limnol. Oceanogr. 50: 968-977.

 

Book chapters

  1. De Baar, H.J.W. Role of the Oceans in the high-CO2 World. In: L.C. van Geuns and L. Groen (eds.) Fossil Fuels, Reserves and Alternatives - a Scientific Approach, Royal Netherlands Academy of Sciences, ISBN 90-6984-441-9, pp. 49-60.

 

Ph-D theses

  1. Arrieta, J.M. Diversity and activity in marine prokaryotes. University of Groningen, 99 pp.
  2. Bozec, Y. Process studies of the biological pump of CO2 in the North Sea and Southern Ocean. University of Groningen, 215 pp.
  3. Rijkenberg, M.J.A. Photochemistry and organic complexation of iron: Interactions in the Southern Ocean. University of Groningen, 222 pp.
  4. Scheffers, S.R. Benthic-pelagic coupling in coral reefs: Interactions between framework cavities and reef water. University of Amsterdam, 116 pp.

naar boven