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Publications BGC

2013

 

  1. Bauersachs, T., Miller, S., Hopmans, E.C., van der Meer, M.T.J., Schouten, S., Sinninghe Damsté, J.S. Distribution of long-chain heterocyst glycolipids in cultures of the thermophilic cyanobacterium Mastigocladus laminosus and a hot spring microbial mat. Org. Geochem. 56, 19-24.
  2. Blanchet, C.L.,Tjallingi, R., Frank, M., Lorenze, J., Reitz, A., Brown, K., Feseker, T., Brückmann, W. High- and low-latitude forcing of the fluvial regime of the Nile during the Holocene inferred from high-resolution analyses of laminated sediments from the Nile deep-sea fan. Earth Plan. Sci. Lett. 364, 98–110.
  3. Blyth, A.J., Schouten, S. Calibrating the glycerol dialkyl glycerol tetraether temperature signal in speleothems. Geochimic. Cosmochim. Acta 109, 312-328.
  4. Bijl, P.K., Bendle, J.A., Bohaty, S.M., Pross, J.D., Schouten, S., Tauxe, L., Stickley, C.E., McKay, R.M., Röhl, U., Olney, M., Sluijs, A., Escutia, C., Brinkhuis, H.,  Expedition 318 Scientists. Eocene cooling linked to early flow across the Tasmanian Gateway. Proc. Nat. Acad. Sci. USA, doi:10.1073/pnas.1220872110.
  5. Borin, S., Mapelli, F., Rolli, E., Song, B., Tobias, C., Schmid, M., de Lange, G.J., Reichart, G.J., Schouten, S., Jetten, M.S.M., Daffonchio, D. Anammox bacterial populations in deep marine hypersaline gradient systems. Extremophiles 17, 289-299.
  6. Etourneau, J., Collins, L.G., Willmott, V., Kim, J.-H., Barbara, L., Leventer, A., Schouten, S., Sinninghe Damsté, J.S., Bianchini, A., Klein, V., Crosta, X., Massé, G., Holocene climate variations in the western Antarctic Peninsula: evidence for sea ice extent predominantly controlled by changes in insolation and ENSO variability. Clim. Past 9, 1431-1446.
  7. de Jonge, C., Hopmans, E.C., Stadnitskaia, A., Rijpstra, W.I.C., Hofland, R., Tegelaar, E., Sinninghe Damsté, J.S. Identification of novel penta- and hexamethylated branched glycerol dialkyl glycerol tetraethers in peat using HPLC–MS2, GC–MS and GC–SMB-MS. Org. Geochem. 54, 78–82.
  8. Ferrer, C., Fodran, P., Barroso, S., Gibson, R., Hopmans, E.C., Sinninghe Damsté, J.S., Schouten, S., Minnaard, A.J. Asymmetric synthesis of cyclo-archaeol and beta-glucosyl cyclo-archaeol. Org. Biomol. Chem. 11, 2482-2492.
  9. Gaudin, M., Gauliard, E., Schouten, S., Houel-Renault, L., Lenormand, P., Marguet, E., Forterre, P. Hyperthermophilic archaea produce membrane vesicles that can transfer DNA. Environm. Microbiol. Rep. 5, 109–116.
  10. Gibson, R.A., van der Meer, M.T.J., Hopmans, E.C., Reysenbach, A.-L., Schouten, S., Sinninghe Damsté, J.S. Comparison of intact polar lipid with microbial community composition of vent deposits of the Rainbow and Lucky Strike hydrothermal fields. Geobiology 11, 72–85.
  11. Haaijer, S.C.M., Ji, K., van Niftrik, L.A.M.P., Hoischen, A., Speth, D., Jetten, M.S.M., Sinninghe Damsté, J.S., Op den Camp, H.J.M. A novel marine nitrite-oxidizing Nitrospira species from Dutch coastal North Sea water. Frontiers Microbiol. 4, 60. doi:10.3389/fmicb.2013.
  12. Hamilton-Brehm, S.D., Gibson, R.A., Green, S.J., Hopmans, E.C., Schouten, S., van der Meer, M.T.J., Shields, J.P., Sinninghe Damsté, J.S., Elkins, J.G. Thermodesulfobacterium geofontis sp. nov.: A hyperthermophilic, sulfate-reducing bacterium isolated from Obsidian Pool, Yellowstone National Park. Extremophiles 17, 251-263.
  13. Hopmans, E.C., Lopes dos Santos, R., Mets, A., Sinninghe Damsté, J.S., Schouten, S. A novel method for the rapid analysis of levoglucosan in soils and sediments. Org. Geochem. 58, 86-88.
  14. Kaserzon, S.L., Vermeirssen, E.L.M., Hawker, D.W., Kennedy, K., Bentley, C., Thompson, J., Booij, K., Mueller, J.F. Passive sampling of perfluorinated chemicals in water: Flow rate effects on chemical uptake. Environmental Pollution 177, 58-63.
  15. Kim, J.J., Alkawally, M., Brady, A.L., Rijpstra, W.I., Sinninghe Damsté, J.S., Dunfield, P.F. Chryseolinea serpens gen. nov., sp. nov., a member of the phylum Bacteroidetes isolated from soil. International Journal of Systematic and Evolutionary Microbiology 63, 654-660.
  16. Lammers, J.M., van Soelen, E.E., Donders, T.H., Wagner-Cremer, F., Sinninghe Damsté, J.S. Reichart, G.J. Natural environmental changes versus human impact in a Florida estuary (Rookery Bay, USA). Estuaries Coasts 36,149–157.
  17. Lopes dos Santos, R.A., De Deckker, P., Sinninghe Damsté, J.S., Schouten, S. A late Quaternary sedimentary record of steryl alkyl ethers from offshore southeastern Australia. Org. Geochem. 54, 140–145.
  18. Nieto-Moreno, V., Martínez-Ruiz, F., Willmot, V., García-Orellana, J., Masqué, P., Sinninghe Damsté, J.S. Climate conditions in the westernmost Mediterranean over the last two millenia: an integrated biomarker approach. Org. Geochem. 55, 1-10.
  19. Schoon, P.L., de Kluijver, A., Middelburg, J.J., Downing, J.A., Sinninghe Damsté, J.S., Schouten, S. Influence of lake water pH and alkalinity on the distribution of core and intact polar branched glycerol dialkyl glycerol tetraethers (GDGTs) in lakes. Org. Geochem. 60, 72-82.
  20. Schouten, S., Hopmans, E.C., Sinninghe Damsté, J.S. The organic geochemistry of glycerol dialkyl glycerol tetraether lipids: A review. Org. Geochem. 54, 19-61.
  21. Schouten, S., Villareal, T.A., Hopmans, E.C., Mets, A., Swanson, K.M., Sinninghe Damsté, J.S. Endosymbiotic heterocystous cyanobacteria synthesize different heterocyst glycolipids than free-living heterocystous cyanobacteria. Phytochem. 85, 115–121.
  22. Smedes, F., van Vliet, L.A., Booij, K. Multi-ratio equilibrium passive sampling method to estimate accessible and pore water concentrations of polycyclic aromatic hydrocarbons and polychlorinated biphenyls in sediment. Environmental Science & Technology 47, 510-517.
  23. Veuger, B., Pitcher, A., Schouten, S., Sinninghe Damsté, J.S., Middelburg, J.J. Nitrification and growth of autotrophic nitrifying bacteria and Thaumarchaeota in the coastal North Sea. Biogeosciences 10, 1775–1785.
  24. Vissers, E.W., Blaga, C.I., Bodelier, P.L.E., Muyzer, G., Schleper, C., Sinninghe Damsté, J.S., Tourna, M., Laanbroek, H.J. Seasonal and vertical distribution of putative ammonia-oxidizing thaumarchaeotal communities in an oligotrophic lake. FEMS Microbiology Ecology 83, 515-526.
  25. Zell, C., Kim, J.-H., Moreira-Turcq, P., Abril, G., Hopmans, E.C., Bonnet, M.-P., Lima Sobrinho, R., Sinninghe Damsté, J.S. Disentangling the origins of branched tetraether lipids and crenarchaeol in the lower Amazon River: Implications for GDGT-based proxies. Limnology and Oceanography 58, 343-353.
2012

  1. Berke, M.A., Johnson, T.C., Werne, J.P., Grice, K., Schouten, S., Sinninghe Damsté, J.S. Molecular records of climate variability and vegetation response since the Late Pleistocene in the Lake Victoria basin, East Africa. Quaternary Science Reviews 55, 59-74.

  2. Berke, M.A., Johnson, T.C., Werne, J.P., Schouten, S., Sinninghe Damsté, J.S. A mid-Holocene thermal maximum at the end of the African Humid Period. Earth and Planetary Science Letters 351, 95-104.

  3. Booij, K., Arifin, Z., Purbonegoro, T. Perylene dominates the organic contaminant profile in the Berau delta, East Kalimantan, Indonesia. Marine Pollution Bulletin 64, 1049–1054.

  4. Brandsma, J., Hopmans, E., Philippart, C., Veldhuis, M., Schouten, S., Sinninghe Damsté, J.S. Low temporal variation in the intact polar lipid composition of North Sea coastal marine water reveals limited chemotaxonomic value. Biogeosciences 9, 1073-1084.

  5. Brandsma, J., Hopmans, E.C., Brussaard, C.P., Witte, H.J., Schouten, S., Sinninghe Damsté, J.S. Spatial distribution of intact polar lipids in North Sea surface waters: Relationship with environmental conditions and microbial community composition. Limnology and Oceanography 57, 959-973.

  6. Costas, A.M., Tsukatani, Y., Rijpstra, W.I.C., Schouten, S., Welander, P.V., Summons, R.E., Bryant, D.A. Identification of the bacteriochlorophylls, carotenoids, quinones, lipids, and hopanoids of "Candidatus Chloracidobacterium thermophilum". Journal of Bacteriology 194, 1158-1168.

  7. Dedysh, S.N., Kulichevskaya, I.S., Serkebaeva, Y.M., Mityaeva, M.A., Sorokin, V.V., Suzina, N.E., Rijpstra, W.I.C., Sinninghe Damsté, J.S. Bryocella elongata gen. nov., sp nov., a member of subdivision 1 of the Acidobacteria isolated from a methanotrophic enrichment culture, and emended description of Edaphobacter aggregans Koch et al. 2008. IJSEM 62, 654-664.

  8. Fallet, U., Castarieda, I.S., Henry-Edwards, A., Richter, T.O., Boer, W., Schouten, S., Brummer, G.J. Sedimentation and burial of organic and inorganic temperature proxies in the Mozambique Channel, SW Indian Ocean. Deep-Sea Research Part I-Oceanographic Research Papers 59, 37-53.

  9. Flores, G.E., Hunter, R.C., Liu, Y., Mets, A., Schouten, S., Reysenbach, A.L. Hippea jasoniae sp nov and Hippea alviniae sp nov., thermoacidophilic members of the class Deltaproteobacteria isolated from deep-sea hydrothermal vent deposits. IJSEM 62, 1252-1258.

  10. Garcia Costas, A.M., Tsukatani, Y., Rijpstra, W.I.C., Schouten, S., Welander, P.V., Summons, R.E., Bryant, D.A. Identification of the bacteriochlorophylls, carotenoids, quinones, lipids, and hopanoids of "Candidatus Chloracidobacterium thermophilum". Journal of Bacteriology 194, 1158-1168.

  11. Handley, L., O'Halloran, A., Pearson, P.N., Hawkins, E., Nicholas, C.J., Schouten, S., McMillan, I.K., Pancost, R.D. Changes in the hydrological cycle in tropical East Africa during the Paleocene-Eocene Thermal Maximum. Palaeogeography Palaeoclimatology Palaeoecology 329, 10-21.

  12. Harada, N., Sato, M., Seki, O., Timmermann, A., Moossen, H., Bendle, J., Nakamura, Y., Kimoto, K., Okazaki, Y., Nagashima, K., Gorbarenko, S.A., Ijiri, A., Nakatsuka, T., Menviel, L., Chikamoto, M.O., Abe-Ouchi, A., Schouten, S. Sea surface temperature changes in the Okhotsk Sea and adjacent North Pacific during the last glacial maximum and deglaciation. Deep-Sea Research Part Ii-Topical Studies in Oceanography 61-64, 93-105.

  13. Jenkyns, H., Schouten-Huibers, L., Schouten, S., Sinninghe Damsté, J.S. Warm Middle Jurassic-Early Cretaceous high-latitude sea-surface temperatures from the Southern Ocean. Climate of the Past 8, 215-226.

  14. Kabel, K., Moros, M., Porsche, C., Neumann, T., Adolphi, F., Andersen, T.J., Siegel, H., Gerth, M., Leipe, T., Jansen, E., Sinninghe Damsté, J.S. Impact of climate change on the health of the Baltic Sea ecosystem over the last 1000 years. Nature Climate Change 2, 871–874.

  15. Kaserzon, S.L., Kennedy, K., Hawker, D.W., Thompson, J., Carter, S., Roach, A.C., Booij, K., Mueller, J.F. Development and calibration of a passive sampler for perfluorinated alkyl carboxylates and sulfonates in water. Environmental Science and Technology 46, 4985-4993.

  16. Kim, J.G., Jung, M.Y., Park, S.J., Rijpstra, W.I.C., Sinninghe Damsté, J.S., Madsen, E.L., Min, D., Kim, J.S., Kim, G.J., Rhee, S.K. Cultivation of a highly enriched ammonia-oxidizing archaeon of thaumarchaeotal group I.1b from an agricultural soil. Environmental Microbiology 14, 1528-1543.

  17. Kim, J.H., Crosta, X., Willmott, V., Renssen, H., Bonnin, J., Helmke, P., Schouten, S., Sinninghe Damsté, J.S. Holocene subsurface temperature variability in the eastern Antarctic continental margin. Geophysical Research Letters 39(6), doi:10.1029/2012GL051157,2012.

  18. Kim, J.H., Romero, O.E., Lohmann, G., Donner, B., Laepple, T., Haam, E., Sinninghe Damsté, J.S. Pronounced subsurface cooling of North Atlantic waters off Northwest Africa during Dansgaard-Oeschger interstadials. Earth and Planetary Science Letters 339-340, 95-102.

  19. Kim, J.H., Zell, C., Moreira-Turcq, P., Perez, M.A., Abril, G., Mortillaro, J.M., Weijers, J.W., Meziane, T., Sinninghe Damsté, J.S. Tracing soil organic carbon in the lower Amazon River and its tributaries using GDGT distributions and bulk organic matter properties. Geochimica et Cosmochimica Acta 90, 163-180.

  20. Kool, D.M., Zhu, B., Rijpstra, W.I.C., Jetten, M.S.M., Ettwig, K.F., Sinninghe Damsté, J.S. Rare branched fatty acids characterize the lipid composition of the intra-aerobic methane oxidizer Methylomirabilis oxyfera. Applied and Environmental Microbiology 78, 8650-8656.

  21. Kulichevskaya, I.S., Detkova, E.N., Bodelier, P.L., Rijpstra, W.I.C., Sinninghe Damsté, J.S., Dedysh, S.N. Singulisphaera rosea sp nov., a planctomycete from acidic Sphagnum peat, and emended description of the genus Singulisphaera. IJSEM 62, 118-123.

  22. Kulichevskaya, I.S., Kostina, L.A., Valaskova, V., Rijpstra, W.I.C., Sinninghe Damsté, J.S., de Boer, W., Dedysh, S.N. Acidicapsa borealis gen. nov., sp nov and Acidicapsa ligni sp nov., subdivision 1 Acidobacteria from Sphagnum peat and decaying wood. IJSEM 62, 1512-1520.

  23. Kulichevskaya, I.S., Serkebaeva, Y.M., Kim, Y., Rijpstra, W.I.C., Sinninghe Damsté, J.S., Liesack, W., Dedysh, S.N. Telmatocola sphagniphila gen. nov., sp. nov., a novel dendriform planctomycete from northern wetlands. Frontiers in microbiology 3, 146.

  24. Lengger, S.K., Hopmans, E.C., Sinninghe Damsté, J.S., Schouten, S. Comparison of extraction and work up techniques for analysis of core and intact polar tetraether lipids from sedimentary environments. Organic Geochemistry 47, 34-40.

  25. Lengger, S.K., Hopmans, E.C., Reichart, G.-J., Sinninghe Damsté, J.S., Schouten, S. Intact polar and core glycerol dibiphytanyl glycerol tetraether lipids in the Arabian Sea Water Oxygen Minimum Zone: II. Selective preservation and degradation in sediments and consequences for the TEX86. Geochimica et Cosmochimica Acta 98, 244-258.

  26. Lohmann, R., Booij, K., Smedes, F., Vrana, B. Use of passive sampling devices for monitoring and compliance checking of POP concentrations in water. Environmental Science and Pollution Research 19, 1885-1895.

  27. Lopes dos Santos, R.A., Wilkins, D., De Deckker, P., Schouten, S. Late Quaternary productivity changes from offshore southeastern Australia: a biomarker approach. Palaeogeography, Palaeoclimatology, Palaeoecology 363-364, 48-56; http://dx.doi.org/10.1016/j.palaeo.2012.08.013.

  28. McKay, R., Naish, T., Carter, L., Riesselman, C., Dunbar, R., Sjunneskog, C., Winter, D., Sangiorgi, F., Warren, C., Pagani, M., Schouten, S., Willmott, V., Levy, R., DeConto, R., Powell, R.D. Antarctic and Southern Ocean influences on Late Pliocene global cooling. Proceedings of the National Academy of Sciences of the United States of America 109, 6423-6428.

  29. Mutterlose, J., Malkoc, M., Schouten, S., Sinninghe Damsté, J.S. Reconstruction of vertical temperature gradients in past oceans – proxy data from the Hauterivian – early Barremian (Early Cretaceous) of the Boreal Realm. Palaeogeography Palaeoclimatology Palaeoecology 363–364, 135–143.

  30. Niemann, H., Stadnitskaia, A., Wirth, S., Gilli, A., Anselmetti, F., Sinninghe Damsté, J.S., Schouten, S., Hopmans, E., Lehmann, M. Bacterial GDGTs in Holocene sediments and catchment soils of a high Alpine lake: application of the MBT/CBT-paleothermometer. Climate of the Past 8, 889-906.

  31. Peterse, F., van der Meer, J., Schouten, S., Weijers, J.W.H., Kim, J.-H., Fierer, N., Jackson, R.B., Sinninghe Damsté, J.S. Revised calibration of the MBT-CBT paleotemperature proxy based on branched tetraether membrane lipids in surface soils. Geochimica et Cosmochimica Acta 96, 215-229.

  32. Pross, J., Contreras, L., Bijl, P.K., Greenwood, D.R., Bohaty, S.M., Schouten, S., Bendle, J.A., Roehl, U., Tauxe, L., Raine, J., I, Huck, C.E., van de Flierdt, T., Jamieson, S.S., Stickley, C.E., van de Schootbrugge, B., Escutia, C., Brinkhuis, H. Persistent near-tropical warmth on the Antarctic continent during the early Eocene epoch. Nature 488, 73-77.

  33. Rampen, S.W., Willmott, V., Kim, J.H., Uliana, E., Mollenhauer, G., Schefuss, E., Sinninghe Damsté, J.S., Schouten, S. Long chain 1,13-and 1,15-diols as a potential proxy for palaeotemperature reconstruction. Geochimica et Cosmochimica Acta 84, 204-216.

  34. Richoz, S., van de Schootbrugge, B., Pross, J., Puettmann, W., Quan, T.M., Lindstrom, S., Heunisch, C., Fiebig, J., Maquil, R., Schouten, S., Hauzenberger, C.A., Wignall, P.B. Hydrogen sulphide poisoning of shallow seas following the end-Triassic extinction. Nature Geoscience 5, 662-667.

  35. Rush, D., Hopmans, E., Wakeham, S., Schouten, S., Sinninghe Damsté, J.S. Occurrence and distribution of ladderane oxidation products in different oceanic regimes. Biogeosciences 9, 2407-2418.

  36. Rush, D., Wakeham, S.G., Hopmans, E.C., Schouten, S., Sinninghe Damsté, J.S. Biomarker evidence for anammox in the oxygen minimum zone of the Eastern Tropical North Pacific. Organic Geochemistry 53, 80-87.

  37. Saenz, J.P., Hopmans, E.C., Rogers, D., Henderson, P.B., Charette, M.A., Schouten, S., Casciotti, K.L., Sinninghe Damsté, J.S., Eglinton, T.I. Distribution of anaerobic ammonia-oxidizing bacteria in a subterranean estuary. Marine Chemistry 136, 7-13.

  38. Sauder, L.A., Peterse, F., Schouten, S., Neufeld, J.D. Low-ammonia niche of ammonia-oxidizing archaea in rotating biological contactors of a municipal wastewater treatment plant. Environmental Microbiology 14, 2589-2600.

  39. Schouten, S., Pitcher, A., Hopmans, E.C., Villaneuva, L., van Bleijswijk, J., Sinninghe Damsté, J.S. Intact polar and core glycerol dibiphytanyl glycerol tetraether lipids in the Arabian Sea oxygen minimum zone: I. Selective preservation and degradation in the water column and its consequences for the TEX86. Geochimica et Cosmochimica Acta 98, 228–243.

  40. Schouten, S., Rijpstra, W.I.C., Schubert, C.J., Durisch-Kaiser, E., Sinninghe Damsté, J.S. Distribution of glycerol dialkyl glycerol tetraether lipids in the water column of Lake Tanganyika. Organic Geochemistry 53, 34-37.

  41. Seki, O., Schmidt, D.N., Schouten, S., Hopmans, E.C., Sinninghe Damsté, J.S., Pancost, R.D. Paleoceanographic changes in the Eastern Equatorial Pacific over the last 10 Myr. Paleoceanography 27(3), doi:10.1029/2011PA002158, 2012.

  42. Erratum to: Sinninghe Damsté, J.S., Ossebaar, J., Abbas, B., Schouten, S., Verschuren, D. Fluxes and distribution of tetraether lipids in an equatorial African lake: Constraints on the application of the TEX86 palaeothermometer and BIT index in lacustrine settings. Geochimica et Cosmochimica Acta 77, 600-602.

  43. Sinninghe Damsté, J.S., Ossebaar, J., Schouten, S., Verschuren, D. Distribution of tetraether lipids in the 25-ka sedimentary record of Lake Challa: extracting reliable TEX86 and MBT/CBT palaeotemperatures from an equatorial African lake. Quaternary Science Reviews 50, 43-54.

  44. Sinninghe Damsté, J.S., Rijpstra, W.I.C., Hopmans, E.C., Jung, M.Y., Kim, J.G., Rhee, S.K., Stieglmeier, M., Schleper, C. Intact polar and core glycerol dibiphytanyl glycerol tetraether lipids of group I.1a and I.1b Thaumarchaeota in soil. Applied and Environmental Microbiology 78, 6866-6874.

  45. Smedes, F., Booij, K. Guidelines for passive sampling of hydrophobic contaminants in water using silicone rubber samplers. ICES Techniques in Marine Environmental Sciences 52,1-20.

  46. Tierney, J.E., Schouten, S., Pitcher, A., Hopmans, E.C., Sinninghe Damsté, J.S. Core and intact polar glycerol dialkyl glycerol tetraethers (GDGTs) in Sand Pond, Warwick, Rhode Island (USA): Insights into the origin of lacustrine GDGTs. Geochimica et Cosmochimica Acta 77, 561-581.

  47. van Bentum, E., Reichart, G., Forster, A., Sinninghe Damsté, J.S. Latitudinal differences in the amplitude of the OAE-2 carbon isotopic excursion: pCO2 and paleo productivity. Biogeosciences 9, 717-731.

  48. van Bentum, E.C., Reichart, G.J., Sinninghe Damsté, J.S. Organic matter provenance, palaeoproductivity and bottom water anoxia during the Cenomanian/Turonian oceanic anoxic event in the Newfoundland Basin (northern proto North Atlantic Ocean). Organic Geochemistry 50, 11-18.

  49. van Winden, J.F., Reichart, G.J., McNamara, N.P., Benthien, A., Sinninghe Damsté, J.S. Temperature-induced increase in methane release from peat bogs: A mesocosm experiment. PloS One 7(6), e39614.

  50. van Winden, J.F., Talbot, H.M., Kip, N., Reichart, G.J., Pol, A., McNamara, N.P., Jetten, M.S., Op den Camp, H.J., Sinninghe Damsté, J.S. Bacteriohopanepolyol signatures as markers for methanotrophic bacteria in peat moss. Geochimica et Cosmochimica Acta 77, 52-61.

  51. Wade, B.S., Houben, A.J., Quaijtaal, W., Schouten, S., Rosenthal, Y., Miller, K.G., Katz, M.E., Wright, J.D., Brinkhuis, H. Multiproxy record of abrupt sea-surface cooling across the Eocene-Oligocene transition in the Gulf of Mexico. Geology 40, 159-162.

  52. Wakeham, S.G., Turich, C., Schubotz, F., Podlaska, A., Li, X.N., Varela, R., Astor, Y., Saenz, J.P., Rush, D., Sinninghe Damsté, J.S., Summons, R.E., Scranton, M.I., Taylor, G.T., Hinrichs, K.U. Biomarkers, chemistry and microbiology show chemoautotrophy in a multilayer chemocline in the Cariaco Basin. Deep-Sea Research Part I-Oceanographic Research Papers 63, 133-156.

  53. Woltering, M., Werne, J.P., Kish, J.L., Hicks, R., Sinninghe Damsté, J.S., Schouten, S. Vertical and temporal variability in concentration and distribution of thaumarchaeotal tetraether lipids in Lake Superior and the implications for the application of the TEX86 temperature proxy. Geochimica et Cosmochimica Acta 87, 136-153.

2011
  1. Bauersachs, T., Compaore, J., Severin, I., Hopmans, E., Schouten, S., Stal, L., Sinninghe Damsté, J.S. Diazotrophic microbial community of coastal microbial mats of the southern North Sea. Geobiology 9, 349-359.
  2. Blaga, C.I., Reichart, G.J., Vissers, E.W., Lotter, A.F., Anselmetti, F.S., Sinninghe Damsté, J.S. Seasonal changes in glycerol dialkyl glycerol tetraether concentrations and fluxes in a perialpine lake: Implications for the use of the TEX86 and BIT proxies. Geochimica et Cosmochimica Acta 75, 6416-6428.
  3. Boere, A., Rijpstra, W.I.C., de Lange, G., Sinninghe Damsté, J.S., Coolen, M. Preservation potential of ancient plankton DNA in Pleistocene marine sediments. Geobiology 9, 377-393.
  4. Boere, A.C., Rijpstra, W.I.C., de Lange, G.J., Malinverno, E., Sinninghe Damsté, J.S., Coolen, M.J.L. Exploring preserved fossil dinoflagellate and haptophyte DNA signatures to infer ecological and environmental changes during deposition of sapropel S1 in the eastern Mediterranean. Paleoceanography 26, PA2204, doi:10.1029/2010PA001948.
  5. Boere, A.C., Sinninghe Damsté, J.S., Rijpstra, W.I.C., Volkman, J.K., Coolen, M.J.L. Source-specific variability in post-depositional DNA preservation with potential implications for DNA-based paleoecological records. Organic Geochemistry 42, 1216–1225.
  6. Brandsma, J., van de Vossenberg, J., Risgaard-Petersen, N., Schmid, M.C., Engstrom, P., Eurenius, K., Hulth, S., Jaeschke, A., Abbas, B., Hopmans, E.C., Strous, M., Schouten, S., Jetten, M.S.M., Sinninghe Damsté, J.S. A multi-proxy study of anaerobic ammonium oxidation in marine sediments of the Gullmar Fjord, Sweden. Environmental Microbiology Reports 3, 360-366.
  7. Caley, T., Malaizé, B., Kim, J.-H., Giraudeau, J., Laepple, T., Caillon, N., Charlier, K., Rebaubier, H., Rossignol, L., Castañeda, I.S., Schouten, S., Sinninghe Damsté, J.S. High-latitude obliquity as a dominant forcing in the Agulhas current system. Climate of the Past 7, 1209–1224.
  8. Castañeda, I.S., Schouten, S. Application of molecular proxies to Quaternary lacustrine deposits. Quaternary Science Reviews 30, 2851-2891.
  9. Dupont, L., Caley, T., Kim, J.-H., Castañeda I.S., Malaizé, B., Giraudeau, J. Glacial-interglacial vegetation dynamics in eastern South Africa depend on sea surface temperature variations in the west Indian Ocean. Climate of the Past 7, 1209–1224.
  10. Fallet, U., Ullgren, J., Castañeda, I.S, van Aken, H., Schouten, S., Ridderinkhof, H., Brummer, G.-J. Contrasting variability in foraminiferal and organic paleotemperature proxies in sedimenting particles of the Mozambique Channel (SW Indian Ocean). Geochimica et Cosmochimica Acta 75, 5834–5848.
  11. Fawcett, P.J., Werne, J.P., Anderson, R.S., Heikoop, J.M., Brown, E.T., Berke, M.A., Smith, S.J., Goff, F., Donohoo-Hurley, L., Cisneros-Dozal, L.M., Schouten, S., Sinninghe Damsté, J.S., Huang, Y.S., Toney, J., Fessenden, J., WoldeGabriel, G., Atudorei, V., Geissman, J.W., Allen, C.D. Extended megadroughts in the southwestern United States during Pleistocene interglacials. Nature 470, 518-521.
  12. Hu, B.L., Rush, D., van der Biezen, E., Zheng, P., van Mullekom, M., Schouten, S., Sinninghe Damsté, J.S., Smolders, A.J.P., Jetten, M.S.M., Kartal, B. New anaerobic, ammonium-oxidizing community enriched from peat soil. Applied and Environmental Microbiology 77, 966-971.
  13. Huguet, C., Martrat, B., Grimalt, J.O., Sinninghe Damsté, J.S., Schouten, S. Coherent millennial-scale patterns in U37k' and TEX86H temperature records during the penultimate interglacial-to-glacial cycle in the western Mediterranean. Paleoceanography 26, PA2218, doi:10.1029/2010PA002048.
  14. Jung, M.Y., Park, S.J., Min, D., Kim, J.S., Rijpstra, W.I.C., Sinninghe Damsté, J.S., Kim, G.J., Madsen, E.L., Rhee, S.K. Enrichment and characterization of an autotrophic ammonia-oxidizing archaeon of mesophilic crenarchaeal group I.1a from an agricultural soil. Applied and Environmental Microbiology 77, 8635–8647, doi:10.1128/AEM.05787-11.
  15. Kaur, G., Mountain, B.W., Hopmans, E.C., Pancost, R.D. Preservation of microbial lipids in geothermal sinters. Astrobiology 11, 259-274.
  16. Kaur, G., Mountain, B.W., Hopmans, E.C., Pancost, R.D. Relationship between lipid distribution and geochemical environment within Champagne Pool, Waiotapu, New Zealand. Organic Geochemistry 42, 1203-1215.
  17. Kim, J., Peterse, F., Willmott, V., Kristensen, D., Baas, M., Schouten, S., Sinninghe Damsté, J.S. Large ancient organic matter contributions to Arctic marine sediments (Svalbard). Limnology and Oceanography 56, 1463-1474.
  18. Kim, J.-H., Talbot, H.M., Zarzycka, B., Bauersachs, T., Wagner, T. Occurrence and abundance of soil-specific bacterial membrane lipid markers in the Têt watershed (Southern France): Soil-specific BHPs and branched GDGTs. Geochemistry Geophysics Geosystems 12, Q02008, doi:10.1029/2010GC003364, 2011.
  19. Kip, N., Ouyang, W.J., van Winden, J., Raghoebarsing, A., van Niftrik, L., Pol, A., Pan, Y., Bodrossy, L., van Donselaar, E.G., Reichart, G.J., Jetten, M.S.M., Sinninghe Damsté, J.S., Op den Camp, H.J.M. Detection, isolation, and characterization of acidophilic methanotrophs from Sphagnum mosses. Applied and Environmental Microbiology 77, 5643-5654.
  20. Kaserzon, S.L., Kennedy, K., Hawker, D.W., Holling, N., Escher, B.I., Booij, K., Mueller, J.F. Development and calibration of a passive sampler for N-nitrosodimethylamine (NDMA) in water. Chemosphere 84, 497-503.
  21. Klanova, J., Diamond, M., ......., Booij, K., et al. Identifying the research and infrastructure needs for the global assessment of hazardous chemicals ten years after establishing the Stockholm Convention. Environmental Science & Technology 45, 7617-7619.
  22. Loomis, S.E., Russell, J.M., Sinninghe Damsté, J.S. Distributions of branched GDGTs in soils and lake sediments from western Uganda: Implications for a lacustrine paleothermometer. Organic Geochemistry 42, 739-751.
  23. Mußmann, M., Brito, I., Pitcher, A., Sinninghe Damsté, J.S., Hatzenpichler, R., Richter, A., Nielsen, J.L., Nielsen, P.H., Müller, A., Daims, H., Wagner, M., Head, I.M. Thaumarchaeotes abundant in refinery nitrifying sludges express amoA but are not obligate autotrophic ammonia oxidizers. Proceedings of the National Academy of Sciences of the United States of America 108, 16771–16776.
  24. Nierop, K.G.J., Speelman, E.N., de Leeuw, J.W., Reichart, G-J. The omnipresent water fern Azolla caroliniana does not contain lignin. Organic Geochemistry 47, 846-850.
  25. O'Brien, D.S., Booij, K., Hawker, D.W., Mueller, J.F. Method for the in situ calibration of a passive phosphate sampler in estuarine and marine waters. Environmental Science & Technology 45, 2871-2877.
  26. Peterse, F., Hopmans, E.C., Schouten, S., Mets, A., Rijpstra, W.I.C., Sinninghe Damsté, J.S. Identification and distribution of intact polar branched tetraether membrane lipids in peat and soil. Organic Geochemistry 42, 1007-1015.
  27. Peterse, F., Prins, M.A., Beets, C.J., Troelstra, S.R., Zheng, H.B., Gu, Z.Y., Schouten, S., Sinninghe Damsté, J.S. Decoupled warming and monsoon precipitation in East Asia over the last deglaciation. Earth and Planetary Science Letters 301, 256-264.
  28. Pitcher, A., Hopmans, E.C., Mosier, A.C., Park, S.J., Rhee, S.K., Francis, C.A., Schouten, S., Sinninghe Damsté, J.S. Core and intact polar glycerol dibiphytanyl glycerol tetraether lipids of ammonia-oxidizing archaea enriched from marine and estuarine sediments. Applied and Environmental Microbiology 77, 3468-3477.
  29. Pitcher, A., Villanueva, L., Hopmans, E.C., Schouten, S., Reichart, G.-J., Sinninghe Damsté, J.S. Niche segregation of Ammonia-oxidizing Archaea and Anammox bacteria in the Arabian Sea oxygen minimum zone. ISME J. 5, 1896–1904.
  30. Pitcher, A., Wuchter, C., Siedenberg, K., Schouten, S., Sinninghe Damsté, J.S. Crenarchaeol tracks winter blooms of planktonic, ammonia-oxidizing Thaumarchaeota in the coastal North Sea. Limnology and Oceanography 56, 2308–2318.
  31. Powers, L.A., Johnson, T.C., Werne, J.P., Castaneda, I.S., Hopmans, E.C., Sinninghe Damsté, J.S., Schouten, S. Organic geochemical records of environmental variability in Lake Malawi during the last 700 years, Part I: The TEX86 temperature record. Palaeogeography Palaeoclimatology Palaeoecology 303, 133-139;  doi:10.1016/j.palaeo.2010.09.006.
  32. Rampen, S.W., Schouten, S., Sinninghe Damsté, J.S. Occurrence of long chain 1,14-diols in Apedinella radians. Organic Geochemistry 42, 572-574.
  33. Ruhl, M., Bonis, N.R., Reichart, G.J., Sinninghe Damsté, J.S., Kurschner, W.M. Atmospheric carbon injection linked to end-triassic mass extinction. Science 333, 430-434.
  34. Rush, D., Jaeschke, A., Hopmans, E.C., Geenevasen, J.A.J., Schouten, S., Sinninghe Damsté, J.S. Short chain ladderanes: Oxic biodegradation products of anammox lipids. Geochimica et Cosmochimica Acta 75, 1662-1671.
  35. Schoon, P.L., Sluijs, A., Sinninghe Damsté, J.S., Schouten, S. Stable carbon isotope patterns of marine biomarker lipids in the Arctic Ocean during Eocene Thermal Maximum 2. Paleoceanography 26, PA3215, doi:10.1029/2010PA002028.
  36. Sinninghe Damsté, J.S., Rijpstra, W.I.C., Hopmans, E.C., Weijers, J.W.H., Foesel, B.U., Overmann, J., Dedysh, S.N. 13,16-Dimethyl octacosanedioic acid (iso-diabolic acid), a common membrane-spanning lipid of acidobacteria subdivisions 1 and 3. Applied and Environmental Microbiology 77, 4147-4154.
  37. Sinninghe Damsté, J.S., Verschuren, D., Ossebaar, J., Blokker, J., van Houten, R., van der Meer, M.T.J., Plessen, B., Schouten, S. A 25,000-year record of climate-induced changes in lowland vegetation of eastern equatorial Africa revealed by the stable carbon-isotopic composition of fossil plant leaf waxes. Earth and Planetary Science Letters 302, 236-246.
  38. Sluijs, A., Bijl, P.K., Schouten, S., Rohl, U., Reichart, G.J., Brinkhuis, H. Southern ocean warming, sea level and hydrological change during the Paleocene-Eocene thermal maximum. Climate of the Past 7, 47-61.
  39. Tierney, J.E., Russell, J.M., Sinninghe Damsté, J.S., Huang, Y., Verschuren, D. Late Quaternary behavior of the East African monsoon and the importance of the Congo Air Boundary. Quaternary Science Reviews 30, 798-807.
  40. Trommer, G., Siccha, M., Schulz, H., Hemleben, Ch., Rohling, E. J., Grant, K., van der Meer, M.T.J., Schouten, S., Kucera, M. Amplitude of climate variability in the Red Sea during the last glacial termination and during the peak interglacial MIS5e. Climate of the Past 7, 941-955.
  41. van Geel, B., Gelorini, V., Lyaruu, A., Aptroot, A., Rucina, S., Marchant, R., Sinninghe Damsté, J.S., Verschuren, D. Diversity and ecology of tropical African fungal spores from a 25,000-year palaeoenvironmental record in southeastern Kenya. Review of Palaeobotany and Palynology 164, 174-190.
  42. Van Rooij, D., Blamart, D., De Mol, L., Mienis, F., Pirlet, H., Wehrmann, L.M., Barbieri, R., Maignien, L., Templer, S.P., de Haas, H., Hebbeln, D., Frank, N., Larmagnat, S., Stadnitskaia, A., Stivaletta, N., van Weering, T., Zhang, Y., Hamoumi, N., Cnudde, V., Duyck, P., Henriet, J.-P. & the MiCROSYSTEMS MD 169 shipboard party. Cold-water coral mounds on the Pen Duick Escarpment, Gulf of Cadiz: the MiCROSYSTEMS project approach. Marine Geology 282, 102-117.
  43. Weijers, J.W.H., Bernhardt, B., Peterse, F., Werne, J.P., Dungait, J.A., Schouten, S., Sinninghe Damsté, J.S. Absence of seasonal patterns in MBT-CBT indices in mid-latitude soils. Geochimica et Cosmochimica Acta 75, 3179-3190.
  44. Weijers, J.W.H., Lima, K.H.L., Aquilina, A., Sinninghe Damsté, J.S., Pancost, R.D. Biogeochemical controls on glycerol dialkyl glycerol tetraether lipid distributions in sediments characterized by diffusive methane flux. G cubed 12, Q10010, 15 PP., 2011 doi:10.1029/2011GC003724.
  45. Weijers, J.W.H., Steinmann, P., Hopmans, E.C., Schouten, S., Sinninghe Damsté, J.S. Bacterial tetraether membrane lipids in peat and coal: Testing the MBT-CBT temperature proxy for climate reconstruction. Organic Geochemistry 42, 477-486.
  46. Wolff, C., Haug, G.H., Timmermann, A., Sinninghe Damsté, J.S., Brauer, A., Sigman, D.M., Cane, M.A., Verschuren, D. Reduced interannual rainfall variability in East Africa during the last ice age. Science 333, 743-747.
  47. Woltering, M., Johnson, T.C., Werne, J.P., Schouten, S., Sinninghe Damsté, J.S. Late Pleistocene temperature history of Southeast Africa: A TEX86 temperature record from Lake Malawi. Palaeogeography Palaeoclimatology Palaeoecology 303, 93-102.

Book chapters

  1. Mills, G.A., Fones, G.R., Booij, K., Greenwood, R. Passive Sampling Techniques. In: Quevauviller, P., Roose, P., Verreet, G. (eds.). Chemical Marine Monitoring: Policy Framework and Analytical Trends. John Wiley & Sons Chichester, UK, 397-432.
  2. Wheeler, A.J., Stadnitskaia, A. Benthic Deep-Sea Carbonates: Reefs and Seeps. In: Hüneke, H., Mulder, T. (eds.). Developments in Sedimentology, Vol. 63, Elsevier, Amsterdam, 397-455.

 

PhD theses

  1. Brandsma, J. The origin and fate of intact polar lipids in the marine environment. Utrecht University, 224 p.
  2. Pitcher, A.M. Intact polar lipids of ammonia-oxidizing Archaea: Structural diversity and application in molecular ecology. Utrecht University, 228 p.
  3. Peterse, F. Environmental controls on the distribution of bacterial tetraether membrane lipids: Constraints on the MBT/CBT paleothermometer. Utrecht University, 144 p.

naar boven

 

2010
  1. Allan, I.J., Booij, K., Paschke, A., Vrana, B., Mills, G.A., Greenwood, R. (2010) Short-term exposure testing of six different passive samplers for the monitoring of hydrophobic contaminants in water. Journal of Environmental Monitoring 12, 696-703.
  2. Arifin, Z., Situmorang, S.P., Booij, K. (2010) Geochemistry of heavy metals (Pb, Cr and Cu) in sediments and benthic communities of Berau Delta, Indonesia. Coastal Marine Research 34, 205-211.
  3. Balk, M., Mehboob, F., van Gelder, A.H., Rijpstra, W.I.C., Sinninghe Damsté, J.S., Stams, A.J.M. (2010) (Per)chlorate reduction by an acetogenic bacterium, Sporomusa sp., isolated from an underground gas storage. Applied Microbiology and Biotechnology 88, 595-603.
  4. Ballantyne, A.P., Greenwood, D.R., Sinninghe Damsté, J.S., Csank, A.Z., Eberle, J.J., Rybczynski, N. (2010) Significantly warmer Arctic surface temperatures during the Pliocene indicated by multiple independent proxies. Geology 38, 603-606.
  5. Bauersachs, T., Schouten, S., Compaore, J., Stal, L.J., Sinninghe Damsté, J.S. (2010a) Occurrence of C35-C45 polyprenols in filamentous and unicellular cyanobacteria. Organic Geochemistry 41, 867-870.
  6. Bauersachs, T., Speelman, E.N., Hopmans, E.C., Reichart, G.J., Schouten, S., Sinninghe Damsté, J.S. (2010b) Fossilized glycolipids reveal past oceanic N2 fixation by heterocystous cyanobacteria. Proceedings of the National Academy of Sciences of the United States of America 107, 19190-19194.
  7. Bendle, J.,  , Maslin, M., Sinninghe Damsté, J.S., Schouten, S., Hopmans, E.C., Boot, C. Pancost, R.D. (2010) Major changes in Last Glacial and Holocene terrestrial temperatures and sources of organic carbon recorded in the Amazon fan by the MBT/CBT continental paleothermometer. Geochemistry Geophysics Geosystems 11, Q12007, doi:10.1029/2010GC003308.
  8. Bijl, P.K., Houben, A.J., Schouten, S., Bohaty, S.M., Sluijs, A., Reichart, G.J., Sinninghe Damsté, J.S., Brinkhuis H. (2010) Transient Middle Eocene atmospheric CO2 and temperature variations. Science 313, 819-821.
  9. Biton, E., Gildor, H., Trommer, G., Siccha, M., Kucera, M., van der Meer, M.T.J., Schouten, S. (2010) Sensitivity of Red Sea circulation to monsoonal variability during the Holocene: An integrated data and modelling study. Paleoceanography 25, PA4209, doi:10.1029/2009PA001876.
  10. Blaga, C.I, Reichart, G.J., Schouten, S., Lotter, A.F., Werne, J.P., Kosten, S., Mazzeo, N., Lacerot, G., Sinninghe Damsté, J.S. (2010) Branched glycerol dialkyl glycerol tetraethers in lake sediments: Can they be used as temperature and pH proxies? Organic Geochemistry 41, 1225-1234.
  11. Booij, K., Smedes, F. (2010) An improved method for estimating in situ sampling rates of nonpolar passive samplers. Environmental Science and Technology 44, 6789-6794.
  12. Brader, A.V., van Winden, J.F., Bohncke, S.J.P., Beets, C.J., Reichart, G-J., de Leeuw J.W. (2010) Fractionation of hydrogen, oxygen and carbon isotopes in n-alkanes and cellulose of three Sphagnum species. Organic Geochemistry 41, 1277-1284.
  13. Castañeda, I.S., Schefuss, E., Patzold, J., Sinninghe Damsté, J.S., Weldeab, S., Schouten, S. (2010) Millennial-scale sea surface temperature changes in the Eastern Mediterranean (Nile River Delta Region) over the last 27,000 years. Paleoceanography 25, PA1208, doi:10.1029/2009PA001740.
  14. Chevalier, N., Bouloubassi, I., Stadnitskaia, A., Taphanel, M.H., Lorre, A., Sinninghe Damsté, J.S., Pierre, C. (2010) Distributions and carbon isotopic compositions of lipid biomarkers in authigenic carbonate crusts from the Nordic margin (Norwegian Sea). Organic Geochemistry 41, 885-890.
  15. Jaeschke, A., Abbas, B., Zabel, M., Hopmans, E.C., Schouten, S., Sinninghe Damsté, J.S. (2010) Molecular evidence for anaerobic ammonium-oxidizing (anammox) bacteria in continental shelf and slope sediments off northwest Africa. Limnology and Oceanography 55, 365-376.
  16. Jaramillo, C., Ochoa, D., Contreras, L., Pagani, M., Carvajal-Ortiz, H., Pratt, L.M., Krishnan, S., Cardona, A., Romero, M., Quiroz, L., Rodriguez, G., Rueda, M.J., de la Parra, F., Moron, S., Green, W., Bayona, G., Montes, C., Quintero, O., Ramirez, R., Mora, G., Schouten, S., Bermudez, H., Navarrete, R., Parra, F., Alvarán, M., Osorno, J., Crowley, J.L., Valencia, V., Vervoort, J. (2010) Effects of rapid global warming at the Paleocene-Eocene boundary on neotropical vegetation. Science 330, 957-961.
  17. Kim, J.H., van der Meer, J., Schouten, S., Helmke, P., Willmott, V., Sangiorgi, F., Koc, N., Hopmans, E.C., Sinninghe Damsté, J.S. (2010) New indices and calibrations derived from the distribution of crenarchaeal isoprenoid tetraether lipids: Implications for past sea surface temperature reconstructions. Geochimica et Cosmochimica Acta 74, 4639-4654.
  18. Kim, J.H., Zarzycka, B., Buscail, R., Peterse, F., Bonnin, J., Ludwig, W., Schouten, S., Sinninghe Damsté, J.S. (2010) Contribution of river-borne soil organic carbon to the Gulf of Lions (NW Mediterranean). Limnology and Oceanography 55, 507-518.
  19. Kip, N., van Winden, J.F., Pan, Y., Bodrossy, L., Reichart, G.J., Smolders, A.J.P., Jetten, M.S.M., Sinninghe Damsté, J.S., Op den Camp, H.J.M. (2010) Global prevalence of methane oxidation by symbiotic bacteria in peat-moss ecosystems. Nature Geoscience 3, 617-621.
  20. Koski, M., Dutz, J., Klein Breteler, W., Rampen, S., Noordeloos, A. (2010) Seasonal changes in food quantity and quality of the common North Sea copepods Temora longicornis and Pseudocalanus elongatus: a bioassay approach. Marine Ecology Progress Series 399,141-155.
  21. Kraal, P., Slomp, C.P., Forster, A., Kuypers, M.M.M. (2010) Phosphorus cycling from the margin to abyssal depths in the proto-Atlantic during oceanic anoxic event 2. Palaeogeography Palaeoclimatology Palaeoecology 295, 42-54.
  22. Leduc, G., Schneider, R., Kim, J.H., Lohmann, G. (2010) Holocene and Eemian sea surface temperature trends as revealed by alkenone and Mg/Ca paleothermometry. Quaternary Science Reviews 29, 989-1004.
  23. Lopes dos Santos, R., Prange, M., Castañeda, I.S., Schefuß, E., Mulitza, S., Schulz, M., Niedermeyer, E.M., Sinninghe Damsté, J.S., Schouten, S. (2010) Glacial-interglacial variability in Atlantic meridional overturning circulation and thermocline adjustments in the tropical North Atlantic. Earth and Planetary Science Letters 300, 407-414.
  24. Lucker, S., Wagner, M., Maixner, F., Pelletier, E., Koch, H., Vacherie, B., Rattei, T., Sinninghe Damsté, J.S., Spieck, E., Le Paslier, D., Daims, H. (2010) A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria. Proceedings of the National Academy of Sciences of the United States of America 107, 13479-13484.
  25. Murphy, S., Pierce, G.J., Law, R.J., Bersuder, P., Jepson, P.D., Learmonth, J.A., Addink, M., Dabin, W. M., Santos, B., Deaville, R., Zegers, B.N., Mets, A., Rogan, E., Ridoux, V., Reid, R.J., Smeenk, C., Jauniaux, T., López, A., Alonso Farré, J.M., González, A.F., Guerra, A., García-Hartmann, M., Lockyer, C., Boon, J.P. (2010) Assessing the effect of persistent organic pollutants on reproductive activity in common dolphins and harbour porpoises. Journal of Northwest Atlantic Fishery Science 42, 153–173.
  26. Mutterlose, J., Malkoc, M., Schouten, S., Sinninghe Damsté, J.S., Forster, A. (2010) TEX86 and stable d18O paleothermometryof early Cretaceous sediments: Implications for belemnite ecology and paleotemperature proxy application. Earth and Planetary Science Letters 298, 286-298.
  27. Palmer, M.R., Brummer, G.J., Cooper, M.J., Elderfield, H., Greaves, M.J., Reichart, G.J., Schouten, S., Yu, J.M. (2010) Multi-proxy reconstruction of surface water pCO2 in the northern Arabian Sea since 29 ka. Earth and Planetary Science Letters 295, 49-57.
  28. Park, B-J., Park, S-J., Yoon, D-N., Schouten, S., Sinninghe Damsté, J.S., Rhee, S-K. (2010) Cultivation of autotrophic ammonia-oxidizing archaea from marine sediments in co-culture with sulfur-oxidizing bacteria. Applied and Environmental Microbiology 76, 7575-7587.
  29. Peterse, F., Nichol, G., Schouten, S., Sinninghe Damsté, J.S. (2010) Influence of soil pH on the abundance and distribution of core and intact polar lipid-derived branched GDGTs in soil. Organic Geochemistry 41, 1171-1175.
  30. Pitcher, A., Rychlik, N., Hopmans, E.C., Spieck, E., Rijpstra, W.I.C., Ossebaar, J., Schouten, S., Wagner, M., Sinninghe Damsté, J.S. (2010) Crenarchaeol dominates the membrane lipids of Candidatus Nitrososphaeragargensis, a thermophilic Group I. 1b Archaeon. The ISME Journal 4, 542-552.
  31. Powers, L.P., Werne, J.P., Vanderwoude, A.J., Sinninghe Damsté, J.S., Hopmans, E.C., Schouten S. (2010) Applicability and calibration of the TEX86 paleothermometer in lakes. Organic Geochemistry 41, 404-413.
  32. Rampen, S.W., Abbas, B.A., Schouten, S., Sinninghe Damsté, J.S. (2010) A comprehensive study of sterols in marine diatoms (Bacillariophyta): Implications for their use as tracers for diatom productivity. Limnology and Oceanography 55, 91-105.
  33. Rattray, J.E., van de Vossenberg, J., Jaeschke, A., Hopmans, E.C., Wakeham, S.G., Lavik, G., Kuypers, M.M.M., Strous, M., Jetten, M.S.M., Schouten, S., Sinninghe Damsté, J.S. (2010) Impact of temperature on ladderane lipid distribution in anammox bacteria. Applied and Environmental Microbiology 76, 1596-1603.
  34. Schouten, S., Middelburg, J.J., Hopmans, E.C., Sinninghe Damsté, J.S. (2010) Fossilization and degradation of intact polar lipids in deep subsurface sediments: A theoretical approach. Geochimica et Cosmochimica Acta 74, 3806-3814.
  35. Sinninghe Damsté, J.S., van Bentum, E.C., Reichart, G.J., Pross, J., Schouten, S. (2010) A CO2 decrease-driven cooling and increased latitudinal temperature gradient during the mid-Cretaceous Oceanic Anoxic Event 2. Earth and Planetary Science Letters 293, 97-103.
  36. Sluijs, A., Bijl, P.K., Schouten, S., Röhl, U., Reichart, G.-J., Brinkhuis, H. (2010) Southern Ocean warming and hydrological change during the Paleocene–Eocene thermal maximum. Climate of the Past Discussions 6, 1701–1731.
  37. Speelman, E.N., Sewall, J.O., Noone, D., Huber, M., von der Heydt, A., Sinninghe Damsté, J.S., Reichart, G.J. (2010) Modeling the influence of a reduced equator-to-pole sea surface temperature gradient on the distribution of water isotopes in the Eocene using CAM3. Earth and Planetary Science Letters 298, 57-65.
  38. Stap, L., Lourens, L., van Dijk, A., Schouten, S., Thomas, E. (2010) Coherent pattern and timing of the carbon isotope excursion and warming during Eocene Thermal Maximum 2 as recorded in planktic and benthic foraminifera. Geochemistry Geophysics Geosystems 11, Q11011, doi:10.1029/2010GC003097.
  39. Tierney, J.E., Russell, J.M., Eggermont, H., Hopmans, E.C., Verschuren, D., Sinninghe Damsté, J.S. (2010) Environmental controls on branched tetraether lipid distributions in tropical East African lake sediments. Geochimica et Cosmochimica Acta 74, 4902-4918.
  40. Trommer, G., Siccha, M., Rohling, E.J., Grant, K., van der Meer, M.T.J., Schouten, S., Hemleben, C., Kucera, M. (2010) Millennial scale variability in Red Sea circulation in response to Holocene insolation forcing. Paleoceanography 25, PA3203, doi:10.1029/2009PA001826.
  41. van der Meer, M.T.J., Klatt, C.G., Wood, J., Bryant, D.A., Bateson, M.M., Lammerts, L., Schouten, S., Sinninghe Damsté, J.S., Madigan, M.T., Ward, D.M. (2010) Cultivation and genomic, nutritional, and lipid biomarker characterization of Roseiflexus strains closely related to predominant in situ populations inhabiting Yellowstone hot spring microbial mats. Journal of Bacteriology 192, 3033-3042.
  42. van Soelen, E.E., Lammertsma, E.I., Cremer, H., Donders, T.H., Sangiorgi, F., Brooks, G.R., Larson, R.A., Sinninghe Damsté, J.S., Wagner-Cremer, F., Reichart, G.J. (2010) Late Holocene sea-level rise in Tampa Bay: Integrated reconstruction using biomarkers, pollen, organic-walled dinoflagellate cysts, and diatoms. Estuarine Coastal and Shelf Science 86, 216-224.
  43. van Winden, J.F., Kip, N., Reichart, G.J., Jetten, M.S.M., Op den Camp, H.J.M., Sinninghe Damsté, J.S. (2010) A biomarker lipid study of symbiotic methane-oxidizing bacteria in peat moss using stable carbon isotopic labelling. Organic Geochemistry 41, 1040–1044.
  44. Verbruggen, F., Heiri, O., Reichart, G.-J., de Leeuw, J.W., Nierop, K.G.J., Lotter, A.F. (2010) Effects of chemical pretreatments on d18O measurements, chemical composition, and morphology of chironomid head capsules. Journal of Paleolimnology 43, 857–872, DOI 10.1007/s10933-009-9374-z.
  45. Weijers, J.W.H., Wiesenberg, G.L.B., Bol, R., Hopmans, E.C., Pancost, R.D. (2010) Carbon isotopic composition of branched tetraether membrane lipids in soils suggest a rapid turnover and a heterotrophic life style of their source organism(s). Biogeosciences 7, 2959-2973.
  46. Willmott, V., Rampen, S.W., Domack, E., Canals, M., Sinninghe Damsté, J.S., Schouten, S. (2010) Holocene changes in Proboscia diatom productivity in shelf waters of the North Western Antarctic Peninsula. Antarctic Science 22, 3–10.
  47. Zanella, B.M.A., Teichert, J., Hoffmann, Stadnitskaia, A., Rosenthal, Y. (2010) The enigmatic ichnofossil Tisoasiphonalis and widespread authigenic seep carbonate formation during the Late Pliensbachian in southern France. Biogeosciences 7, 3123-3138.
  48. Zonneveld, K.A.F., Versteegh, G.J.M., Kasten, S., Eglinton, T.I., Emeis, K.C., Huguet, C., Koch, B.P., De Lange, G.J., De Leeuw, J.W., Middelburg, J.J., Mollenhauer, G., Prahl, F.G., Rethemeyer, J., Wakeham, S.G. (2010) Selective preservation of organic matter in marine environments; processes and impact on the sedimentary record. Biogeosciences 7, 483-511.

Book chapters

  1. Amaral-Zettler, L., Artigas, L., Baross, J., Bharathi, L., Boetius, A., Chandramohan, D., Herndl, G., Kogure, K., Neal, P., Pedrós-Alió, C., Ramette, A., Schouten, S., Stal, L., Thessen, A., de Leeuw, J., Sogin, M. A (2010) Global census of marine microbes. In: McIntyre, A. (ed.) Life in the World's Oceans: Diversity, Abundance and Distribution. Wiley-Blackwell, 223-247.

PhD theses

  1. Bauersachs, T. (2010) Development and application of proxies for past cyanobacterial nitrogen fixation. PhD thesis, Utrecht University, 168 p.
  2. Boere, A.C. (2010) Validation and application of fossil DNA as a recorder of past marine ecosystems and environmental conditions. PhD thesis, Utrecht University, 176 p.

 

naar boven

2009
  1. Allan, I.J., Booij, K., Paschke, A., Vrana, B., Mills, G.A., Greenwood, R. (2009) Field performance of seven passive sampling devices for monitoring of hydrophobic substances. Environmental Science and Technology 43, 5383-5390.
  2. Balk, M., Heilig, H.G.H.J., van Eekert, M.H.A., Stams, A.J.M., Rijpstra, W.I.C., Sinninghe Damsté, J.S., de Vos, W.M., Kengen, S.W.M. (2009) Isolation and characterization of a new CO-utilizing strain, Thermoanaerobacterthermohydrosulfuricus subsp. carboxydovorans, isolated from a geothermal spring in Turkey. Extremophiles 13, 885–894.
  3. Bauersachs, T., Compaoré, J., Hopmans, E.C., Stal, L.J., Schouten, S., Sinninghe Damsté, J.S. (2009) Distribution of heterocyst glycolipids in cyanobacteria. Phytochemistry 70, 2034–2039.
  4. Bauersachs, T., Hopmans, E.C., Compaoré, J., Stal, L.J., Schouten, S., Sinninghe Damsté, J.S. (2009) Rapid analysis of long-chain glycolipids in heterocystous cyanobacteria using high-performance liquid chromatography coupled to electrospray ionization tandem mass spectrometry. Rapid Communications in Mass Spectrometry 23, 1387-1394.
  5. Bauersachs, T., Kremer, B., Schouten, S., Sinninghe Damsté, J.S. (2009) A biomarker and d15N study of thermally altered Silurian cyanobacterial mats. Organic Geochemistry 40, 149-157.
  6. Bauersachs, T., Schouten, S., Compaoré, J., Wollenzien, U., Stal, L.J., Sinninghe Damsté, J.S. (2009) Nitrogen isotopic fractionation associated with growth on dinitrogen gas and nitrate by cyanobacteria. Limnology and Oceanography 54, 1403-1411.
  7. Bayon, G., Loncke, L., Dupre, S., Caprais, J.C., Ducassou, E., Duperron, S., Etoubleau, J., Foucher, J.P., Fouquet, Y., Gontharet, S., Henderson, G.M., Huguen, C., Klaucke, I., Mascle, J., Migeon, S., Roy, K.O.L., Ondreas, H., Pierre, C., Sibuet, M., Stadnitskaia, A., Woodside, J. (2009) Multi-disciplinary investigation of fluid seepage on an unstable margin: The case of the Central Nile deep sea fan. Marine Geology 261, 92-104.
  8. Bijl, P.K., Schouten, S., Sluijs, A., Reichart, G.J., Zachos, J.C., Brinkhuis, H. (2009) Early Palaeogene temperature evolution of the Southwest Pacific Ocean. Nature 461, 776-779.
  9. Blaga, C.I., Reichart, G.J., Heiri, O., Sinninghe Damsté, J.S. (2009) Tetraether membrane lipid distributions in water-column particulate matter and sediments: a study of 47 European lakes along a north-south transect. Journal of Paleolimnology 41, 523-540.
  10. Bodelier, P.L.E., Gillisen, M.J.B., Hordijk, K., Sinninghe Damsté, J.S., Rijpstra, W.I.C., Geenevasen, J.A.J., Dunfield, P.F. (2009) A reanalysis of phospholipid fatty acids as ecological biomarkers for methano-trophic bacteria. The ISME Journal 3, 606-617.
  11. Boere, A.C., Abbas, B., Rijpstra, W.I.C., Versteegh, G.J.M., Volkman, J.K., Sinninghe Damsté, J.S., Coolen, M.J.L. (2009) Late-Holocene succession of dinoflagellates in an Antarctic fjord using a multi-proxy approach: paleoenvironmental genomics, lipid biomarkers and palynomorphs. Geobiology 7, 265-281.
  12. Boumann, H.A., Longo, M.L., Stroeve, P., Poolman, B., Hopmans, E.C., Stuart, M.C.A., Sinninghe Damsté, J.S., Schouten, S. (2009) Biophysical properties of membrane lipids of anammox bacteria: I. Ladderane phospholipids form highly organized fluid membranes. Biochimica et Biophysica Acta-Biomembranes 1788, 1444-1451.
  13. Boumann, H.A., Stroeve, P., Longo, M.L., Poolman, B., Kuiper, J.M., Hopmans, E.C., Jetten, M.S.M., Sinninghe Damsté, J.S., Schouten, S. (2009) Biophysical properties of membrane lipids of anammox bacteria: II. Impact of temperature and bacteriohopanoids. Biochimica et Biophysica Acta-Biomembranes 1788, 1452-1457.
  14. Byrne, N., Strous, M., Crepeau, V., Kartal, B., Birrien, J.L., Schmid, M., Lesongeur, F., Schouten, S., Jaeschke, A., Jetten, M., Prieur, D., Godfroy, A. (2009) Presence and activity of anaerobic ammonium-oxidizing bacteria at deep-sea hydrothermal vents. The ISME Journal 3, 117-123.
  15. Castañeda, I.S., Mulitza, S., Schefuß, E., Lopes dos Santos, R.A., Sinninghe Damsté, J.S., Schouten, S. (2009) Wet phases in the Sahara/Sahel region and human migration patterns in North Africa. Proceedings of the National Academy of Sciences 106, 20159-20163.
  16. Donders, T.H., Weijers, J.W.H., Munsterman, D.K., Hoeve, M.L.K.V., Buckles, L.K., Pancost, R.D., Schouten, S., Sinninghe Damsté, J.S., Brinkhuis, H. (2009) Strong climate coupling of terrestrial and marine environments in the Miocene of northwest Europe. Earth and Planetary Science Letters 281, 215-225.
  17. Ellen, A.F., Albers, S.-V., Huibers, W., Pitcher, A., Hobel, C.F.V., Schwarz, H., Folea, M., Schouten, S., Boekema, E.J., Poolman, B., Driessen, A.J.M. (2009) Proteomic analysis of secreted membrane vesicles of archaeal Sulfolobus species reveals the presence of endosome sorting complex components. Extremophiles 13, 67-79.
  18. Gontharet, S., Stadnitskaia, A., Bouloubassi, I., Pierre, C., Sinninghe Damsté, J.S. (2009) Palaeo methane-seepage history traced by biomarker patterns in a carbonate crust, Nile deep-sea fan (Eastern Mediterranean Sea). Marine Geology 261, 105-113.
  19. Herfort, L., Kim, J.H., Coolen, M.J.L., Abbas, B., Schouten, S., Herndl, G.J., Sinninghe Damsté, J.S. (2009) Diversity of Archaea and detection of crenarchaeotal amoA genes in the rivers Rhine and Tet. Aquatic Microbial Ecology 55, 189-201.
  20. Hollis, C.J., Handley, L., Crouch, E.M., Morgans, H.E.G., Baker, J.A., Creech, J., Collins, K.S., Gibbs, S.J., Huber, M., Schouten, S., Zachos, J.C., Pancost, R.D. (2009) Tropical sea temperatures in the high-latitude South Pacific during the Eocene. Geology 37, 99-102.
  21. Huguen, C., Foucher, J.P., Mascle, J., Ondréas, H., Thouement, M., Gontharet, S., Stadnitskaia, A., Pierre, C., Bayon, G., Loncke, L., Boetius, A., Bouloubassi, I., de Lange, G., Caprais, J.C., Fouquet, Y., Woodside, J., Dupré, S., the NAUTINIL Scientific Party. (2009) Menes caldera, a highly active site of brine seepage in the Eastern Mediterranean sea: “In situ” observations from the NAUTINIL expedition (2003). Marine Geology 261, 138-152.
  22. Huguet, C., Kim, J.-H., de Lange, G.J., Sinninghe Damsté, J.S., Schouten, S. (2009) Effects of long-term oxic degradation on the Uk'37, TEX86 and BIT organic proxies. Organic Geochemistry 40, 1188-1194.
  23. Jaeschke, A., Op den Camp, H.J.M., Harhangi, H., Klimiuk, A., Hopmans, E.C., Jetten, M.S.M., Schouten, S., Sinninghe Damsté, J.S. (2009) 16S rRNA gene and lipid biomarker evidence for anaerobic ammonium-oxidizing bacteria (anammox) in California and Nevada hot springs. FEMS Microbiology Ecology 67, 343-350.
  24. Jaeschke, A., Rooks, C., Trimmer, M., Nicholls, J.C., Hopmans, E.C., Schouten, S., Sinninghe Damsté, J.S. (2009) Comparison of ladderane phospholipid and core lipids as indicators for anaerobic ammonium oxidation (anammox) in marine sediments. Geochimica et Cosmochimica Acta 73, 2077-2088.
  25. Jaeschke, A., Ziegler, M., Hopmans, E.C., Reichart, G.J., Lourens, L.J., Schouten, S., Sinninghe Damsté, J.S. (2009) Molecular fossil evidence for anaerobic ammonium oxidation in the Arabian Sea over the last glacial cycle. Paleoceanography 24, PA2202, doi:10.1029/2008PA001712.
  26. Jagersma, G.C., Meulpas, R.J.W., Heikamp-de Jong, I., Gieteling, J., Klimiuk, A., Schouten, S., Sinninghe Damsté, J.S., Lens, P.N.L., Stams, A.J.M. (2009) Microbial diversity and community structure of a highly active anaerobic methane-oxidizing sulfate-reducing enrichment. Environmental Microbiology 11, 3223–3232.
  27. Kim, J.H., Buscail, R., Bourrin, F., Palanques, A., Sinninghe Damsté, J.S., Bonnin, J., Schouten, S. (2009) Transport and depositional process of soil organic matter during wet and dry storms on the Têt inner shelf (NW Mediterranean). Palaeogeography Palaeoclimatology Palaeoecology 273, 228-238.
  28. Kim, J.H., Crosta, X., Michel, E., Schouten, S., Duprat, J., Sinninghe Damsté, J.S. (2009) Impact of lateral transport on organic proxies in the Southern Ocean. Quaternary Research 71, 246-250.
  29. Kim, J.H., Huguet, C., Zonneveld, K.A.F., Versteegh, G.J.M., Roeder, W., Sinninghe Damsté, J.S., Schouten, S. (2009) An experimental field study to test the stability of lipids used for the TEX86 and U37K' palaeothermometers. Geochimica et Cosmochimica Acta 73, 2888-2898.
  30. Kraal, P., Slomp, C.P., Forster, A., Kuypers, M.M.M., Sluijs, A. (2009) Pyrite oxidation during sample storage determines phosphorus fractionation in carbonate-poor anoxic sediments. Geochimica et Cosmochimica Acta 73, 3277-3290.
  31. Kulichevskaya, I.S., Baulina, O.I., Bodelier, P.L.E., Rijpstra, W.I.C., Sinninghe Damsté, J.S., Dedysh, S.N. (2009) Zavarzinellaformosa gen. nov., sp nov., a novel stalked, Gemmata-like planctomycete from a Siberian peat bog. International Journal of Systematic and Evolutionary Microbiology 59, 357-364.
  32. Mertens, K.N., Ribeiro, S., Bouimetarhan, I., Caner, H., Nebout, N.C., Dale, B., De Vernal, A., Ellegaard, M., Filipova, M., Godhe, A., Goubert, E., Grosfjeld, K., Holzwarth, U., Kotthoff, U., Leroy, S.A.G., Londeix, L., Marret, F., Matsuoka, K., Mudie, P.J., Naudts, L., Pena-Manjarrez, J.L., Persson, A., Popescu, S.M., Pospelova, V., Sangiorgi, F., van der Meer, M.T.J., Vink, A., Zonneveld, K.A.F., Vercauteren, D., Vlassenbroeck, J., Louwye, S. (2009) Process length variation in cysts of a dinoflagellate, Lingulodiniummachaerophorum, in surface sediments and its potential use as a salinity proxy. Marine Micropaleontology 70, 54-69.
  33. Omoregie, E.O., Niemann, H., Mastalerz, V., de Lange, G.J., Stadnitskaia, A., Mascle, J., Foucher, J.P., Boetius, A. (2009) Microbial methane oxidation and sulfate reduction at cold seeps of the deep Eastern Mediterranean Sea. Marine Geology 261, 114-127.
  34. Op den Camp, H.J.M., Islam, T., Stott, M.B., Harhangi, H.R., Hynes, A., Schouten, S., Jetten, M.S.M., Birkeland, N.K., Pol, A., Dunfield, P.F. (2009) Environmental, genomic, and taxonomic perspectives on methanotrophic Verrucomicrobia. Environmental Microbiology Reports 1, 293-306.
  35. Peterse, F., Kim, J.H., Schouten, S., Kristensen, D.K., Koc, N., Sinninghe Damsté, J.S. (2009) Constraints on the application of the MBT/CBT palaeothermometer at high latitude environments (Svalbard, Norway). Organic Geochemistry 40, 692-699.
  36. Peterse, F., Schouten, S., van der Meer, J., van der Meer, M.T.J., Sinninghe Damsté, J.S. (2009) Distribution of branched tetraether lipids in geothermally heated soils: Implications for the MBT/CBT temperature proxy. Organic Geochemistry 40, 201-205.
  37. Peterse, F., van der Meer, M.T.J., Schouten, S., Jia, G., Ossebaar, J., Blokker, J., Sinninghe Damsté, J.S. (2009) Assessment of soil n-alkane δD and branched tetraether membrane lipid distributions as tools for paleoelevation reconstruction. Biogeosciences 6, 2799-2807.
  38. Pitcher, A., Hopmans, E.C., Schouten, S., Sinninghe Damsté, J.S. (2009) Separation of core and intact polar archaeal tetraether lipids using silica columns: Insights into living and fossil biomass contributions. Organic Geochemistry 40, 12-19.
  39. Pitcher, A., Schouten, S., Sinninghe Damsté, J.S. (2009) In situ production of crenarchaeol in two California hot springs. Applied and Environmental Microbiology 75, 4443-4451.
  40. Rampen, S.W., Schouten, S., Hopmans, E.C., Abbas, B., Noordeloos, A.A.M., Geenevasen, J.A.J., Moldowan, J.M., Denisevich, P., Sinninghe Damsté, J.S. (2009a) Occurrence and biomarker potential of 23-methyl steroids in diatoms and sediments. Organic Geochemistry 40, 219-228.
  41. Rampen, S.W., Schouten, S., Hopmans, E.C., Abbas, B., Noordeloos, A.A.M., van Bleijswijk, J.D.L., Geenevasen, J.A.J., Sinninghe Damsté, J.S. (2009b) Diatoms as a source for 4-desmethyl-23,24-dimethyl steroids in sediments and petroleum. Geochimica et Cosmochimica Acta 73, 377-387.
  42. Rampen, S.W., Schouten, S., Panoto, F.E., Brink, M., Andersen, R.A., Muyzer, G., Abbas, B., Sinninghe Damsté, J.S. (2009c) Phylogenetic position of AttheyaLongicornis and AttheyaSeptentrionalis (Bacillariophyta). Journal of Phycology 45, 444-453.
  43. Rampen, S.W., Schouten, S., Schefuß, E., Sinninghe Damsté, J.S. (2009d) Impact of temperature on the long-chain diol and mid-chain hydroxy methyl alkanoate composition in Proboscia diatoms: Results from culture and field studies. Organic Geochemistry 40, 1124–1131.
  44. Rampen, S.W., Volkman, J.K., Hur, S.B., Abbas, B.A., Schouten, S., Jameson, I.D., Holdsworth, D.G., Bae, J.H., Sinninghe Damsté, J.S. (2009e) Occurrence of gorgosterol in diatoms of the genus Delphineis. Organic Geochemistry 40, 144-147.
  45. Rattray, J.E., Geenevasen, J.A.J., van Niftrik, L., Rijpstra, W.I.C., Hopmans, E.C., Strous, M., Schouten, S., Jetten, M.S.M., Sinninghe Damsté, J.S. (2009) Carbon isotope-labelling experiments indicate that ladderane lipids of anammox bacteria are synthesized by a previously undescribed, novel pathway. FEMS Microbiology Letters 292, 115-122.
  46. Rattray, J.E., Strous, M., Op den Camp, H.J.M., Schouten, S., Jetten, M.S., Sinninghe Damsté, J.S. (2009) A comparative genomics study of genetic products potentially encoding ladderane lipid biosynthesis. Biology Direct 4:8 doi:10.1186/1745-6150-4-8.
  47. Schouten, S., Hopmans, E.C., van der Meer, J., Mets, A., Bard, E., Bianchi, T.S., Diefendorf, A., Escala, M., Freeman, K.H., Furukawa, Y., Huguet, C., Ingalls, A., Menot-Combes, G., Nederbragt, A.J., Oba, M., Pearson, A., Pearson, E.J., Rosell-Mele, A., Schaeffer, P., Shah, S.R., Shanahan, T.M., Smith, R.W., Smittenberg, R., Talbot, H.M., Uchida, M., Van Mooy, B.A.S., Yamamoto, M., Zhang, Z.H., Sinninghe Damsté, J.S. (2009) An interlaboratory study of TEX86 and BIT analysis using high-performance liquid chromatography-mass spectrometry. Geochemistry Geophysics Geosystems 10, Q03012, doi:10.1029/2008GC002221.
  48. Schouten, S., Klimiuk, A.M., van der Meer, M.T.J., Sinninghe Damsté, J.S. (2009) Occurrence and carbon metabolism of green nonsulfur-like bacteria in Californian and Nevada hot spring microbial mats as revealed by wax ester lipid analysis. Geomicrobiology Journal 26, 179-188.
  49. Seki, O., Sakamoto, T., Sakai, S., Schouten, S., Hopmans, E.C., Sinninghe Damsté, J.S., Pancost, R.D. (2009) Large changes in seasonal sea ice distribution and productivity in the Sea of Okhotsk during the deglaciations. G-cubed 10, Q10007, doi:10.1029/2009GC002613.
  50. Sinninghe Damsté, J.S., Ossebaar, J., Abbas, B., Schouten, S., Verschuren, D. (2009) Fluxes and distribution of tetraether lipids in an equatorial African lake: Constraints on the application of the TEX86 palaeothermometer and BIT index in lacustrine settings. Geochimica et Cosmochimica Acta 73, 4232-4249.
  51. Sluijs, A., Schouten, S., Donders, T.H., Schoon, P.L., Röhl, U., Reichart, G.J., Sangiorgi, F., Kim, J.-H., Sinninghe Damsté, J.S., Brinkhuis, H. (2009) Warm and wet conditions in the Arctic region during Eocene Thermal Maximum 2. Nature Geosciences 2, 777-780.
  52. Smedes, F., Geertsma, R.W., van der Zande, T., Booij, K. (2009) Polymer-water partition coefficients of hydrophobic compounds for passive sampling: Application of cosolvent models for validation. Environmental Science and Technology 43, 7047-7054.
  53. Speelman, E.N., Reichart, G.J., de Leeuw, J.W., Rijpstra, W.I.C., Sinninghe Damsté, J.S. (2009) Biomarker lipids of the freshwater fern Azolla and its fossil counterpart from the Eocene Arctic Ocean. Organic Geochemistry 40, 628-637.
  54. Speelman, E.N., van Kempen, M.M.L., Barke, J., Brinkhuis, H., Reichart, G.J., Smolders, A.J.P., Roelofs, J.G.M., Sangiorgi, F., de Leeuw, J.W., Lotter, A.F., Sinninghe Damsté, J.S. (2009) The Eocene Arctic Azolla bloom: environmental conditions, productivity and carbon drawdown. Geobiology 7, 155-170.
  55. Trommer, G., Siccha, M., van der Meer, M.T.J., Schouten, S., Sinninghe Damsté, J.S., Schulz, H., Hemleben, C., Kucera, M. (2009) Distribution of Crenarchaeota tetraether membrane lipids in surface sediments from the Red Sea. Organic Geochemistry 40, 724-731.
  56. van Bentum, E.C., Hetzel, A., Brumsack, H.J., Forster, A., Reichart, G.J., Sinninghe Damsté, J.S. (2009) Reconstruction of water column anoxia in the equatorial Atlantic during the Cenomanian-Turonian oceanic anoxic event using biomarker and trace metal proxies. Palaeogeography Palaeoclimatology Palaeoecology 280, 489-498.
  57. Verschuren, D., Sinninghe Damsté, J.S., Moernaut, J., Kristen, I., Blaauw, M., Fagot, M., Haug, G., CHALLACEA project members. (2009) Half-precessional dynamics of monsoon rainfall near the East African equator. Nature 462, 637-641.
  58. Weelink, S.A.B., van Doesburg, W., Talarico Saia, F., Rijpstra, W.I.C., Röling, W.F.M., Smidt, H., Stams, A.J.M. (2009) A strictly anaerobic betaproteobacterium Georgfuchsia toluolica gen. nov., sp. nov. degrades aromatic compounds with Fe(III), Mn(IV) or nitrate as an electron acceptor. FEMS Microbiology Ecology 70, 243-253.
  59. Weijers, J.W.H., Panoto, E., van Bleijswijk, J., Schouten, S., Rijpstra, W.I.C., Balk, M., Stams, A.J.M., Sinninghe Damsté, J.S. (2009) Constraints on the biological source(s) of the orphan branched tetraether membrane lipids. Geomicrobiology Journal 26, 402-414.
  60. Weijers, J.W.H., Schouten, S., Schefuss, E., Schneider, R.R., Sinninghe Damsté, J.S. (2009) Disentangling marine, soil and plant organic carbon contributions to continental margin sediments: A multi-proxy approach in a 20,000 year sediment record from the Congo deep-sea fan. Geochimica et Cosmochimica Acta 73, 119-132.

PhD theses

  1. Jaeschke, A. (2009) Present and past contribution of anaerobic ammonium oxidation to nitrogen cycling as revealed by ladderane lipids. PhD Thesis Utrecht University, 172 p.
  2. Rampen, S.W. (2009) Molecular fossils of diatoms: Application in petroleum geochemistry and palaeoenvironmental studies. PhD Thesis Utrecht University, 261 p.

 

naar boven

2008
  1. Balk, M., Altinbas, M., Rijpstra, W.I.C., Sinninghe Damsté, J.S., Stams, A.J.M. (2008) Desulfatirhabdium butyrativorans gen. nov., sp. nov., a butyrate-oxidizing, sulfate-reducing bacterium isolated from an anaerobic bioreactor. International Journal of Systematic and Evolutionary Microbiology 58, 110-115.
  2. Beckmann, B., Hofmann, P., Marz, C., Schouten, S., Sinninghe Damsté, J.S., Wagner, T. (2008) Coniacian-Santonian deep ocean anoxia/euxinia inferred from molecular and inorganic markers: Results from the Demerara Rise (ODP Leg 207). Organic Geochemistry 39, 1092-1096.
  3. Bornemann, A., Norris, R.D., Friedrich, O., Beckmann, B., Schouten, S., Sinninghe Damsté, J.S., Vogel, J., Hofmann, P., Wagner, T. (2008) Isotopic evidence for glaciation during the Cretaceous supergreenhouse. Science 319, 189-192.
  4. Brovkin, V., Kim, J.H., Hofmann, M., Schneider, R.R. (2008) A lowering effect of reconstructed Holocene changes in sea surface temperatures on the atmospheric CO2 concentration. Global Biogeochemical Cycles 22, GB1016, doi:10.1029/2006GB002885.
  5. Burgess, C.E., Pearson, P.N., Lear, C.H., Morgans, H.E.G., Handley, L., Pancost, R.D., Schouten, S. (2008) Middle Eocene climate cyclicity in the southern Pacific: Implications for global ice volume. Geology 36, 651-654.
  6. Coolen, M.J.L., Talbot, H.M., Abbas, B.A., Ward, C., Schouten, S., Volkman, J.K., Sinninghe Damsté, J.S. (2008) Sources for sedimentary bacteriohopanepolyols as revealed by 16S rDNA stratigraphy. Environmental Microbiology 10, 1783-1803.
  7. Dupont, L., Behling, H., Kim, J.-H. (2008) Thirty thousand years of vegetation development and climate change in Angola (Ocean Drilling Program Site 1078). Climate of the Past Discussions 4, 111-147.
  8. Ellis, S.G., Booij, K., Kaputa, M. (2008) Comparison of semipermeable membrane device (SPMD) and large-volume solid-phase extraction techniques to measure water concentrations of 4,4 '-DDT, 4,4 '-DDE, and 4,4 '-DDD in Lake Chelan, Washington. Chemosphere 72, 1112-1117.
  9. Forster, A., Kuypers, M.M.M., Turgeon, S.C., Brumsack, H.-J., Petrizzo, M.R., Sinninghe Damsté, J.S. (2008) The Cenomanian/Turonian oceanic anoxic event in the South Atlantic: New insights from a geochemical study of DSDP Site 530A. Palaeogeography Palaeoclimatology Palaeoecology 67, 256-283.
  10. Hofmann, P., Stusser, I., Wagner, T., Schouten, S., Sinninghe Damsté, J.S. (2008) Climate-ocean coupling off North-West Africa during the Lower Albian: The Oceanic Anoxic Event 1b. Palaeogeography Palaeoclimatology Palaeoecology 262, 157-165.
  11. Huguet, C., de Lange, G.J., Gustafsson, Ö., Middelburg, J.J., Sinninghe Damsté, J.S., Schouten, S. (2008) Selective preservation of soil organic matter in oxidized marine sediments (Madeira Abyssal Plain). Geochimica et Cosmochimica Acta 72, 6061-6068.
  12. Jaeschke, A., Lewan, M.D., Hopmans, E.C., Schouten, S., Sinninghe Damsté, J.S. (2008) Thermal stability of ladderane lipids as determined by hydrous pyrolysis. Organic Geochemistry 39, 1735-1741.
  13. Kartal, B., van Niftrik, L., Rattray, J., de Vossenberg, J.L.C.M., Schmid, M.C., Sinninghe Damsté, J.S., Jetten, M.S.M., Strous, M. (2008) Candidatus 'Brocadiafulgida': an autofluorescent anaerobic ammonium oxidizing bacterium. FEMS Microbiology Ecology 63, 46-55.
  14. Kim, J.H., Buscail, R., Palanques, A., Sinninghe Damsté, J.S., Bonnin, J., Schouten, S. (2008) Delivery of terrestrial organic matter during wet and dry storms on the Têt inner shelf (NW Mediterranean). Palaeogeography Palaeoclimatology Palaeoecology, doi:10.1016/j.palaeo.2008.04.019, 2008.
  15. Kim, J.H., Schouten, S., Hopmans, E.C., Donner, B., Sinninghe Damsté, J.S. (2008) Global core-top calibration of the TEX86 paleothermometer in the ocean. Geochimica et Cosmochimica Acta 72, 1154-1173.
  16. Kulichevskaya, I.S., Ivanova, A.O., Baulina, O.I., Bodelier, P.L.E., Sinninghe Damsté, J.S., Dedysh, S.N. (2008) Singulisphaeraacidiphila gen. nov., sp nov., a non-filamentous, Isosphaera-like planctomycete from acidic northern wetlands. International Journal of Systematic and Evolutionary Microbiology 58, 1186-1193.
  17. Lee, K.-Y., Kim, J.H., Wilke, I., Helmke, P., Schouten, S. (2008) A study of the alkenone, TEX86, and planktonic foraminifera in the Benguela Upwelling System: Implications for past sea surface temperature estimates. Geochem. Geophys. Geosyst., 9, Q10019, doi:10.1029/2008GC002056, 2008.
  18. Mollenhauer, G., Eglinton, T.I., Hopmans, E.C., Sinninghe Damsté, J.S. (2008) A radiocarbon-based assessment of the preservation characteristics of crenarchaeol and alkenones from continental margin sediments. Organic Geochemistry 39, 1039-1045.
  19. Omoregie, E.O., Mastalerz, V., De Lange, G.J., Straub, K.L., Kappler, A., Røy, H., Stadnitskaia, A., Foucher, J.-P., Boetius, A. (2008) Biogeochemistry and community composition of iron- and sulfur-precipitating microbial mats at the Chefren mud volcano (Nile Deep Sea Fan, Eastern Mediterranean). Applied and Environmental Microbiology 74, 3198-3215.
  20. Pierce, G.J., Santos, M.B., Murphy, S., Learmonth, J.A., Zuur, A.F., Rogan, E., Bustamante, P., Caurant, F., Lahaye, V., Ridoux, V., Zegers, B.N., Mets, A., Addink, M., Smeenk, C., Jauniaux, T., Law, R.J., Dabin, W., Lopez, A., Farre, J.M.A., Gonzalez, A.F., Guerra, A., Garcia-Hartmann, M., Reid, R.J., Moffat, C.F., Lockyer, C., Boon, J.P. (2008) Bioaccumulation of persistent organic pollutants in female common dolphins (Delphinus delphis) and harbour porpoises (Phocoena phocoena) from western European seas: Geographical trends, causal factors and effects on reproduction and mortality. Environmental Pollution 153, 401-415.
  21. Rampen, S.W., Schouten, S., Koning, E., Brummer, G.-J.A., Sinninghe Damsté, J.S. (2008) A novel long-chain diol index documenting a 90 ka upwelling record from the northwestern Indian Ocean. Earth and Planetary Science Letters 276, 207-213.
  22. Rattray, J.E., van de Vossenberg, J., Hopmans, E.C., Kartal, B., van Niftrik, L., Rijpstra, W.I.C., Strous, M., Jetten, M.S.M., Schouten, S., Sinninghe Damsté, J.S. (2008) Ladderane lipid distribution in four genera of anammox bacteria. Archives of Microbiology 190, 51-66.
  23. Romero, O.E., Kim, J.H., Donner, B. (2008) Submillennial-to-millennial variability of diatom production off Mauritania, NW Africa, during the last glacial cycle. Paleoceanography 23, PA3218, doi:10.1029/2008PA001601.
  24. Sangiorgi, F., Brumsack, H.J., Willard, D.A., Schouten, S., Stickley, C.E., O'Regan, M., Reichart, G.J., Sinninghe Damsté, J.S., Brinkhuis, H. (2008) A 26 million year gap in the central Arctic record at the greenhouse-icehouse transition: Looking for clues. Paleoceanography 23, PA1S20, doi:10.1029/2007PA001559.
  25. Sangiorgi, F., van Soelen, E.E., Spofforth, D.J.A., Palike, H., Stickley, C.E., John, K.S., Koc, N., Schouten, S., Sinninghe Damsté, J.S., Brinkhuis, H. (2008) Cyclicity in the middle Eocene central Arctic Ocean sediment record: Orbital forcing and environmental response. Paleoceanography 23, PA1S08. doi:10.1029/2007PA001487-00.
  26. Schouten, S., Baas, M., Hopmans, E.C., Reysenbach, A.L., Sinninghe Damsté, J.S. (2008) Tetraether membrane lipids of Candidatus "Aciduliprofundumboonei", a cultivated obligate thermoacidophilic euryarchaeote from deep-sea hydrothermal vents. Extremophiles 12, 119-124.
  27. Schouten, S., Baas, M., Hopmans, E.C., Sinninghe Damsté, J.S. (2008) An unusual isoprenoid tetraether lipid in marine and lacustrine sediments. Organic Geochemistry 39, 1033-1038.
  28. Schouten, S., Eldrett, J., Greenwood, D.R., Harding, I., Baas, M., Sinninghe Damsté, J.S. (2008) Onset of long-term cooling of Greenland near the Eocene-Oligocene boundary as revealed by branched tetraether lipids. Geology 36, 147-150.
  29. Schouten, S., Hopmans, E.C., Baas, M., Boumann, H., Standfest, S., Konneke, M., Stahl, D.A., Sinninghe Damsté, J.S. (2008) Intact membrane lipids of "Candidatus Nitrosopumilusmaritimus," a cultivated representative of the cosmopolitan mesophilic group I crenarchaeota. Applied and Environmental Microbiology 74, 2433-2440.
  30. Schouten, S., Özdirekcan, S., van der Meer, M.T.J., Blokker, P., Baas, M., Hayes, J.M., Sinninghe Damsté, J.S. (2008) Evidence for substantial intramolecular heterogeneity in the stable carbon isotopic composition of phytol in photoautotrophic organisms. Organic Geochemistry 39, 135-146.
  31. Schouten, S., van der Meer, M.T.J., Hopmans, E.C., Sinninghe Damsté, J.S. (2008) Comment on "Lipids of marine Archaea: patterns and provenance in the water-column and sediments" by Turich et al. (2007). Geochimica et Cosmochimica Acta 72, 5432-5436.
  32. Sinninghe Damsté, J.S., Hopmans, E.C. (2008) Does fossil pigment and DNA data from Mediterranean sediments invalidate the use of green sulfur bacterial pigments and their diagenetic derivatives as proxies for the assessment of past photic zone euxinia? Environmental Microbiology 10, 1392-1399.
  33. Sinninghe Damsté, J.S., Kuypers, M.M.M., Pancost, R.D., Schouten, S. (2008) The carbon isotopic response of algae, (cyano)bacteria, archaea and higher plants on the late Cenomanian perturbation of the global carbon cycle: Insights from biomarkers in black shales from the Cape Verde Basin (DSDP Site 367). Organic Geochemistry 39, 1703-1718.
  34. Sinninghe Damsté, J.S., Ossebaar, J., Schouten, S., Verschuren, D. (2008) Altitudinal shifts in the branched tetraether lipid distribution in soil from Mt. Kilimanjaro (Tanzania): Implications for the MBT/CBT continental palaeothermometer. Organic Geochemistry 39, 1072-1076.
  35. Sluijs, A., Brinkhuis, H., Crouch, E.M., John C.M., Handley, L., Munsterman, D., Bohaty, S., Zachos, J.C., Reichart, G.J., Schouten, S., Pancost, R.D., Sinninghe Damsté, J.S., Welters, N.L.D., Lotter, A.F., Dickens, G.R. (2008) Eustatic variations during the Paleocene-Eocene greenhouse world. Paleoceanography 23, PA4216, doi:10.1029/2008PA001615.
  36. Sluijs, A., Rohl, U., Schouten, S., Brumsack, H.J., Sangiorgi, F., Sinninghe Damsté, J.S., Brinkhuis, H. (2008) Arctic late Paleocene-early Eocene paleoenvironments with special emphasis on the Paleocene-Eocene thermal maximum (Lomonosov Ridge, Integrated Ocean Drilling Program Expedition 302). Paleoceanography 23, PA1S11, doi:10.1029/2007PA001495.
  37. Stadnitskaia, A., Bouloubassi, I., Elvert, M., Hinrichs, K.U., Sinninghe Damsté, J.S. (2008a) Extended hydroxyarchaeol, a novel lipid biomarker for anaerobic methanotrophy in cold seepage habitats. Organic Geochemistry 39, 1007-1014.
  38. Stadnitskaia, A., Ivanov, M.K., Poludetkina, E.N., Kreulen, R., van Weering, T.C.E. (2008b) Sources of hydrocarbon gases in mud volcanoes from the Sorokin Trough, NE Black Sea, based on molecular and carbon isotopic compositions. Marine and Petroleum Geology 25, 1040-1057.
  39. Stadnitskaia, A., Ivanov, M.K., Sinninghe Damsté, J.S. (2008c) Application of lipid biomarkers to detect sources of organic matter in mud volcano deposits and post-eruptional methanotrophic processes in the Gulf of Cadiz, NE Atlantic. Marine Geology 255, 1-14.
  40. Stadnitskaia, A., Nadezhkin, D., Abbas, B., Blinova, V., Ivanov, M.K., Sinninghe Damsté, J.S. (2008d) Carbonate formation by anaerobic oxidation of methane: Evidence from lipid biomarker and fossil 16S rDNA. Geochimica et Cosmochimica Acta 72, 1824-1836.
  41. Talbot, H.M., Coolen, M.J.L., Sinninghe Damsté, J.S. (2008) An unusual 17α,21ß(H)-bacteriohopanetetrol in Holocene sediments from Ace Lake (Antarctica). Organic Geochemistry 39, 1029-1032.
  42. Tierney, J.E., Russell, J.M., Huang, Y., Sinninghe Damsté, J.S., Hopmans, E.C., Cohen, A.S. (2008) Northern Hemisphere controls on tropical Southeast African climate during the past 60,000 years. Science 322, 252-255.
  43. van de Vossenberg, J., Rattray, J., Geerts W., Kartal, B., van Niftrik, L., van Donselaar E.G., Sinninghe Damsté, J.S., Strous, M., Jetten, M.S.M. (2008) Enrichment and characterization of two marine anammox bacteria involved in global nitrogen gas production. Environmental Microbiology 11, 3120-3129.
  44. van der Meer, M.T.J., Lammerts, L., Skirnisdottir, S., Sinninghe Damsté, J.S., Schouten, S. (2008a) Distribution and isotopic composition of bacterial lipid biomarkers in microbial mats from a sulfidic Icelandic hot spring. Organic Geochemistry 39, 1015-1019.
  45. van der Meer, M.T.J., Sangiorgi, F., Baas, M., Brinkhuis, H., Sinninghe Damsté, J.S., Schouten, S. (2008b) Molecular isotopic and dinoflagellate evidence for Late Holocene freshening of the Black Sea. Earth and Planetary Science Letters 267, 426-434.
  46. van Dongen, B.E., Semiletov, I., Weijers, J.W.H., Gustafsson, Ö. (2008) Contrasting lipid biomarker composition of terrestrial organic matter exported from across the Eurasian Arctic by the five Great Russian Arctic Rivers. Global Biogeochemical Cycles 22, GB1011, doi:10.1029/2007GB002974.
  47. Wagner, T., Herrle, J.O., Sinninghe Damsté, J.S., Schouten, S., Stusser, I., Hofmann, P. (2008) Rapid warming and salinity changes of Cretaceous surface waters in the subtropical North Atlantic. Geology 36, 203-206.
  48. Werne, J.P., Lyons, T.W., Hollander, D.J., Schouten, S., Hopmans, E.C., Sinninghe Damsté, J.S. (2008) Investigating pathways of diagenetic organic matter sulfurization using compound-specific sulfur isotope analysis. Geochimica et Cosmochimica Acta 72, 3489-3502.

PhD theses

  1. Rattray, J.E. (2008) Ladderane lipids in anammox bacteria: occurrence, biosynthesis and application as environmental markers. PhD thesis Utrecht University, 204 pp.

 

naar boven

 

2007
  1. Booij, K., R. van Bommel, K.C. Jones & J.L. Barber. (2007) Air-water distribution of hexachlorobenzene and 4,4’‑DDE along a North-South Atlantic transect. Mar. Poll. Bull. 54: 814 – 819.
  2. Brovkin, V., J.-H. Kim, M. Hofmann & R.R. Schneider. (2007) A lowering effect of Holocene changes in sea surface temperatures on the atmospheric CO2 concentration. Global Biogeochemical Cycles, doi:10.1029/2006GB002885.
  3. Cartes, J.E., C. Huguet, S. Parra & F. Sanchez. (2007) Trophic relationships in deep – water decapods of Le Danois bank (Cantabrian Sea, NE Atlantic): Trends related with depth and seasonal changes in food quality and availability. Deep Sea Research I 54: 1091 – 1110.
  4. Coolen, M.J.L. & J. Overmann. (2007) 217 000 – year – old DNA sequences of green sulfur bacteria in Mediterranean sapropels and their implications for the reconstruction of the paleoenvironment. Environ. Microbiol. 9: 238 – 249.
  5. Coolen, M.J.L., B. Abbas, J. van Bleiswijk, E.C. Hopmans, M.M.M. Kuypers, S.G. Wakeham & J.S. Sinninghe Damsté. (2007a) Putative ammonia – oxidizing Crenarchaeota in suboxic waters of the Black Sea: A basin – wide ecological study using 16S ribosomal and functional genes and membrane lipids. Environ. Microbiol. 9: 1001 – 1016.
  6. Coolen, M.J.L., J.K. Volkman, B. Abbas, G. Muyzer, S. Schouten & J.S. Sinninghe Damsté. (2007b) Identification of organic matter in sulfidic Holocene Antarctic fjord sediments from fossil rDNA sequence analysis. Paleoceanography 22: PA2211: doi:10.1029/ 2006PA001309.
  7. Dupré, S., J. Woodside, J.-P. Foucher, G. de Lange, J. Mascle, A. Boetius, V. Mastalerz, A. Stadnitskaia, H. Ondréas, C. Huguen, F. Harmégnies, S. Gontharet, L. Loncke, E. Deville, H. Niemann, E. Omoregie, K. Olu-Le Roy, A. Fiala-Medioni, A. Dählmann, J.-C. Caprais, A. Prinzhofer, M. Sibuet, C. Pierre, J.S. Sinninghe Damsté & the NAUTINIL Scientific Party. (2007) Seafloor geological studies above active gas chimneys off Egypt (Central Nile Deep Sea Fan). Deep Sea Res. I 54: 1146 – 1172.
  8. Forster, A., S. Schouten, K. Moriya, P.A. Wilson & J.S. Sinninghe Damsté. (2007a) Tropical warming and intermittent cooling during the Cenomanian/Turonian Oceanic Anoxic Event (OAE 2): Sea surface temperature records from the equatorial Atlantic. Paleoceanography 22: PA1219, doi:10.1029/2006PA001349.
  9. Forster, A., S. Schouten, M. Baas & J.S. Sinninghe Damsté. (2007b) Mid – Cretaceous (Albian – Santonian) sea surface temperature record of the tropical Atlantic Ocean. Geology 35: 919 – 922.
  10. Hamersley, M.R., G. Lavik, D. Woebken, J.E. Rattray, P. Lam, E.C. Hopmans, J.S. Sinninghe Damsté, S. Krüger, M. Graco, D. Gutiérrez & M.M.M. Kuypers. (2007) Anaerobic ammonium oxidation contributes significantly to nitrogen loss from the Peruvian oxygen minimum zone. Limnol. Oceanogr. 52: 923 – 933.
  11. Harju, M., T. Hamers, J.H. Kamstra, E. Sonneveld, J.P. Boon, M. Tysklind & P.L. Andersson. (2007) Quantitative structure-activity relationship modelling on in vitro endocrine effects and metabolic stability involving 26 selected brominated flame retardants. Environ. Toxicol. Chem. 26: 816 – 826.
  12. Herfort, L., S. Schouten, B. Abbas, M.J.W. Veldhuis, M.J.L. Coolen, C. Wuchter, J.P. Boon, G.J. Herndl & J.S. Sinninghe Damsté. (2007) Variations in spatial and temporal distribution of Archaea in the North Sea in relation to environmental variables. FEMS Microbiol. Ecol. 62: 242 – 257.
  13. Huguet, C., A. Schimmelmann, R. Thunell, L.J. Lourens, J.S. Sinninghe Damsté & S. Schouten. (2007) A study of the TEX86 paleothermometer in the water column and sediments of the Santa Barbara Basin, California. Paleoceanography 22: PA3203, doi:10.1029/2006PA001310.
  14. Huguet, C., R.H. Smittenberg, W. Boer, J.S.Sinninghe Damsté & S. Schouten. (2007) Twentieth century proxy records of temperature and soil organic matter input in the Drammensfjord, southern Norway. Org. Geochem. 38: 1838 – 1849.
  15. Jaeschke, A., E.C. Hopmans, S.G. Wakeham, S. Schouten & J.S. Sinninghe Damsté. (2007) The presence of ladderane lipids in the oxygen minimum zone of the Arabian Sea indicates nitrogen loss through anammox. Limnol. Oceanogr. 82: 780 – 786.
  16. Karakitsios, V., H. Tsikos, Y. van Breugel, L. Koletti, J.S. Sinninghe Damsté & H.C. Jenkyns. (2007) First evidence for the Cenomanian – Turonian Oceanic Anoxic Event (OAE2, “Bonarelli” event) from the Ionian Zone, western continental Greece. Int. J. Earth Sci. 96: 343 – 352.
  17. Kartal, B., J. Rattray, L. van Niftrik, J.L.C.M. van de Vossenberg, M.C. Schmid, R.I. Webb, S. Schouten, J.A. Fuerst, J.S. Sinninghe Damsté, M.S.M. Jetten & M. Strous. (2007) Candidatus "Anammoxoglobuspropionicus" a new propionate species of anaerobic ammonium oxidizing bacteria. Syst. Appl. Microbiol. 30: 39 – 49.
  18. Kim, J.-H., H. Meggers, N. Rimbu, G. Lohmann, T. Freudental, P.J. Müller & R.R. Schneider. (2007) Impacts of the North Atlantic gyre circulation on Holocene climate off Northwest Africa. Geology 35: 387 – 390.
  19. Kim, J.-H., W. Ludwig, S. Schouten, P. Kerhervé, L. Herfort, J. Bonnin & J.S. Sinninghe Damsté. (2007) Impact of flood events on the transport of terrestrial organic matter to the ocean: A study of the Têt River (SW France) using the BIT index. Org. Geochem. 38: 1593 – 1606.
  20. Kulichevskaya, I.S., A.O. Ivanova, S.E. Belova, O.I. Baulina, P.L.E. Bodelier, W.I.C. Rijpstra, J.S. Sinninghe Damsté, G.A. Zavarzin & S.N. Dedysh. (2007) Schlesneriapaludicola gen. nov., sp. nov., the first acidophilic member of the Order Planctomycetales from Sphagnum – dominated boreal wetlands. Int. J. Syst. Evol. Microbiol. 57: 2680-2687; doi:10.1099/ijs.0.65157-0
  21. Lahaye,V., P. Bustamante, R.J. Law, J.A. Learmonth, M.B. Santos, J.P. Boon, E. Rogan, W. Dabin, M.J. Addink, A. Lopez, A.F. Zuur, G.J. Pierce & F. Caurant. (2007) Biological and ecological factors related to trace element levels in harbour porpoises (Phocoena phocoena) from European waters. Mar. Environ. Res. 64: 247 –266.
  22. Marino, G.M., E. Rohling, W.I.C. Rijpstra, F. Sangiorgi, S. Schouten & J.S. Sinninghe Damsté. (2007) Aegean Sea as driver of hydrographic and ecological changes in the eastern Mediterranean. Geology 35: 675 – 678.
  23. Mollenhauer, G., M. Inthorn, T. Vogt, M. Zabel, J.S. Sinninghe Damsté & T.I. Eglinton. (2007) Aging of marine organic matter during cross – shelf lateral transport in the Benguela upwelling system revealed by compound – specific radiocarbon dating. G cubed 8: Q09004, doi:10.1029/2007GC001603.
  24. Pearson, P.N., B.E. van Dongen, C.J. Nicholas, R.D. Pancost, S. Schouten, J.M. Singano & B.S. Wade. (2007) Stable warm tropical climate through the Eocene epoch. Geology 35: 211 – 214.
  25. Rampen, S.W., S. Schouten, B. Abbas, F.E. Panoto, G. Muyzer, C.N. Campbell, J. Fehling & J.S. Sinninghe Damsté. (2007) On the origin of 24-norcholestanes and their use as age-diagnostic biomarkers. Geology 35: 419 – 422.
  26. Rampen, S.W., S.Schouten, S.G. Wakeham & J.S. Sinninghe Damsté. (2007) Seasonal and spatial variation in the sources and fluxes of long-chain diols and mid-chain hydroxy methyl alkanoates in the Arabian Sea. Org. Geochem. 38: 165 – 179.
  27. Reneerkens, J., J.B. Almeida, D.B. Lank, J. Jukema, R.B. Lanctot, R.I.G. Morrison, W.I.C. Rijpstra, D. Schamel, H. Schekkerman, J.S.Sinninghe Damsté, P.S. Tomkovich, D.M. Tracy, I. Tulp & T. Piersma. (2007) Parental role division predicts avian preen wax cycles. Ibis 149: 721 – 729.
  28. Reneerkens, J., T. Piersma & J.S. Sinninghe Damsté. (2007) Comparisons of annual cycles in moult, mass and preen wax composition in Red Knots Calidriscanutus that experience different photoperiods. Phys. Biochemical Zool. 307A: 127 – 139.
  29. Rijpstra, W.I.C., J. Reneerkens, T. Piersma & J.S. Sinninghe Damsté. (2007) Structural identification of the β-hydroxy fatty acid-based diester preen gland waxes of shorebirds. J. Nat. Prod 70: 1804 – 1807.
  30. Rusina, T.P., F. Smedes, J. Klanova, K. Booij & I. Holoubek. (2007) Polymer selection for passive sampling: a comparison of critical properties. Chemosphere 68: 1344 – 1351.
  31. Schouten, S, C. Huguet, E.C. Hopmans & J.S. Sinninghe Damsté. (2007) Improved analytical methodology of the TEX86 paleothermometry by high performance liquid chromatography/ atmospheric pressure chemical ionization-mass spectrometry. Anal. Chem. 79: 2940 – 2944.
  32. Schouten, S., A. Forster, F.E. Panoto & J.S. Sinninghe Damsté. (2007) Towards the calibration of the TEX86 palaeothermometer for tropical sea surface temperatures in ancient greenhouse worlds. Org. Geochem. 38: 1537 – 1546.
  33. Schouten, S., J. Ossebaar, G.-J. Brummer, H. Elderfield & J.S. Sinninghe Damsté. (2007) Transport of terrestrial organic matter to the deep north Atlantic Ocean by ice rafting. Org. Geochem. 38: 1161 – 1168.
  34. Schouten, S., M. Woltering, W.I.C. Rijpstra, A. Sluijs, H. Brinkhuis & J.S. Sinninghe Damsté. (2007) The Paleocene - Eocene carbon isotope excursion in higher plant organic matter: Differential stable carbon isotopic fractionation of angiosperms and conifers on the Arctic continent. Earth Plan. Sci. Lett. 258: 581 – 592.
  35. Schouten, S., M.T.J. van der Meer, E.C. Hopmans, W.I.C. Rijpstra, A-L. Reysenbach, D.M. Ward & J.S. Sinninghe Damsté. (2007) Archaeal and bacterial glycerol dialkyl glycerol tetraether lipids in hot springs of Yellowstone National Park (USA). Appl. Env. Microbiol. 73: 6181 – 691.
  36. Sinninghe Damsté, J.S., W.I.C. Rijpstra, E.C. Hopmans, M. Balk & A.J. Stams. (2007) Structural characterization of mixed ether/ester, membrane-spanning lipids of bacteria from the order Thermotogales. Arch. Microbiol. 188, 629 – 641.
  37. Sinninghe Damsté, J.S., W.I.C. Rijpstra, M.J.L. Coolen, S. Schouten & J.K. Volkman. (2007) Rapid sulfurisation of highly branched isoprenoid (HBI) alkenes in sulfidic Holocene sediments from Ellis Fjord, Antarctica. Org. Geochem. 38: 128 – 139.
  38. Sluijs, A., H. Brinkhuis, S. Schouten, J.C. Zachos, S. Bohaty, C. John, R. Deltrap, G.J. Reichart, J.S. Sinninghe Damsté, E. Crouch & G.R. Dickens. (2007) Environmental precursors to rapid light carbon injection at the Palaeocene/Eocene boundary. Nature 450, 1218 – 1221.
  39. Stadnitskaia, A., V. Blinova, M. Baas, E.C. Hopmans, M.K. Ivanov & J.S. Sinninghe Damsté. (2007) Lipid biomarkers in sediments of mud volcanoes from the Sorokin Trough, NE Black Sea: Probable source strata for the erupted material. Org. Geochem. 38: 67 – 83.
  40. ten Hallers-Tjabbes, C.C. (2007) Underwater noise from maritime sources and impact on marine life. WMU Journal of Maritime Affairs 6: 225-233.
  41. van Breugel, Y., S. Schouten, H. Tsikos, E. Erba, G.D. Price & J.S. Sinninghe Damsté. (2007) Synchronous negative carbon isotope shifts in marine and terrestrial biomarkers at the onset of the Aptian oceanic anoxic event - 1a: Evidence for the release of methane into the atmosphere. Paleoceanography 22: PA1210, doi:10.1029/2006PA001341.
  42. van der Meer, M.T.J., M. Baas, W.I.C. Rijpstra, G. Marino, E.J. Rohling, J.S. Sinninghe Damsté & S. Schouten. (2007a) Hydrogen isotopic compositions of long – chain alkenones record freshwater flooding of the Eastern Mediterranean at the onset of sapropel deposition. Earth Plan. Sci. Lett. 262: 594 – 600.
  43. van der Meer, M.T.J., S. Schouten, J.S. Sinninghe Damsté & D.M. Ward. (2007b) Impact of carbon metabolisms on 13C signatures of cyanobacteria and green nonsulfur – like bacteria inhabiting a microbial mat from an alkaline siliceous hot spring in Yellowstone National Park (USA). Env. Microbiol. 9: 482 – 491.
  44. van Dongen, B, A.P. Roberts, S. Schouten, W.T. Jiang, F. Florindo & R.D. Pancost. (2007) Formation of iron sulfide nodules during anaerobic oxidation of methane. Geochim. Cosmochim. Acta 21: 5155-5167.
  45. Versteegh, G.J.M., J.W. de Leeuw, C. Taricco & A. Romero. (2007) Temperature and productivity influences on UK'37 and their possible relation to solar forcing of the Mediterranean winter. G - cubed: Q09005, doi:10.1029/2006GC001543.
  46. Vrana, B., G.A. Mills, M. Kotterman, P. Leonards, K. Booij & R. Greenwood. (2007) Modelling and field application of the Chemcatcher passive sampler calibration data for the monitoring of hydrophobic organic pollutants in water. Environ. Pollut. 145: 895– 904.
  47. Wakeham, S.G., R. Amann, K.H. Freeman, E.C. Hopmans, B.B. Jørgensen, I.F. Putnam, S. Schouten, J.S. Sinninghe Damsté, H.M. Talbot & D. Woebken. (2007) Microbial ecology of the stratified water column of the Black Sea as revealed by a comprehensive biomarker study. Org. Geochem. 38: 2070 – 2097.
  48. Weijers, J.W.H., E. Schefuss, S. Schouten & J.S. Sinninghe Damsté. (2007a) Coupled thermal and hydrological evolution of tropical Africa over the last deglaciation. Science 315: 1701 – 1704.
  49. Weijers, J.W.H., S. Schouten, A. Sluijs, H. Brinkhuis & J.S. Sinninghe Damsté. (2007b) Warm Arctic continents during the Palaeocene - Eocene thermal maximum. Earth Planet. Sci. Lett. 261: 230 – 238.
  50. Weijers, J.W.H., S. Schouten, J.C. van den Donker, E.C. Hopmans & J.S. Sinninghe Damsté. (2007c) Environmental controls on bacterial tetraether membrane lipid distribution in soils. Geochim. Cosmochim. Acta 71: 703 – 713.

Book chapters

  1. Booij, K., B. Vrana & J.N. Huckins. (2007) Theory, modelling and calibration of passive samplers used in water monitoring. In: R. Greenwood, G.A. Mills & B. Vrana (Eds). Passive sampling techniques. Elsevier, Amsterdam, pp. 141-169.

PhD theses

  1. Huguet, C. (2007) TEX86 paleothermometry: proxy validation and application in marine sediments. PhD thesis Utrecht University, 186 pp.
  2. Stadnitskaia, A.N. (2007) Bio – and Petroleum Geochemistry of Mud Volcanoes in the Sorokin Trough (NE Black Sea) and in the Gulf of Cadiz (NE Atlantic): From Fluid Sources to Microbial Methane Oxidation and Carbonate Formation., PhD thesis Utrecht University, 227 pp.
  3. Weijers, J.W.H. (2007) Soil – derived branched tetraether membrane lipids in marine sediments: reconstruction of past continental climate and soil organic mater fluxes to the ocean. PhD thesis Utrecht University, 204 pp.
 
2006
  1. Blokker, P., H. van den Ende, J.W. de Leeuw, G.J.M. Versteegh & J.S. Sinninghe Damsté. (2006) Chemical fingerprinting of algaenans using RuO4 degradation. Org. Geochem. 37: 871-881.
  2. Booij, K., F. Smedes, E.M. van Weerlee & P.J.C. Honkoop. (2006) Environmental monitoring of hydrophobic organic contaminants: the case of mussels versus semipermeable membrane devices. Environ. Sci. Technol. 40: 3893-3900.
  3. Booij, K., R. van Bommel, A. Mets & R. Dekker. (2006) Little effect of excessive biofouling on the uptake of organic contaminants by semipermeable membrane devices. Chemosphere 65: 2485-2492.
  4. Bouloubassi, I., G. Aloisi, R.D. Pancost, E.C. Hopmans, C. Pierre & J.S. Sinninghe Damsté. (2006) Archaeal and bacterial lipids in authigenic carbonate crusts from eastern Mediterranean mud volcanoes. Org. Geochem. 37: 484-500.
  5. Boumann, H.A., E.C. Hopmans, I. van de Leemput, H.J.M. Op den Camp, J. van de Vossenberg, M. Strous, M.S.M. Jetten, J.S. Sinninghe Damsté & S. Schouten. (2006) Ladderane phospholipids in anammox bacteria comprise phosphocholine and phosphoethanolamine headgroups. FEMS Microbiol. Lett. 258: 297-304.
  6. Brinkhuis, H., S. Schouten, M.E. Collinson, A. Sluijs, J.S. Sinninghe Damsté, G.R. Dickens, M. Huber, T.M. Cronin, J. Onodera, K. Takahashi, J.P. Bujak, R. Stein, J. van der Burgh, J.S. Eldrett, I.C. Harding, A.F. Lotter, J. Backman, K. Moran & the Expedition 302 Scientists. (2006) Episodic fresh surface waters in the Eocene Arctic Ocean. Nature 441: 606-609.
  7. Coolen, M.J.L., A. Boere, B. Abbas, M. Baas, S.G. Wakeham & J.S. Sinninghe Damsté. (2006) Ancient DNA derived from alkenone-biosynthesizing haptophytes and other algae in Holocene sediments from the Black Sea. Paleoceanography 21: PA1005, doi:10.1029/2005pa001188.
  8. De Leeuw, J.W., G.J.M. Versteegh & P.F. van Bergen. (2006) Biomacromolecules of algae and plants and their fossil analogues. Plant Ecology 182: 209-233.
  9. Dumitrescu, M., S.C. Brassell, S. Schouten, E.C. Hopmans & J.S. Sinninghe Damsté. (2006) Instability in tropical Pacific sea surface temperatures during the Early Aptian. Geology 34: 833-836.
  10. Fang, J., A. Shizuka, C. Kato & S. Schouten. (2006)  Microbial diversity of cold-seep sediments in Sagami Bay, Japan, as determined by 16S rRNA gene and lipid analyses. FEMS Microbial Ecology 57: 429-444.
  11. Heijs, S.K., G. Aloisi, I. Bouloubassi, R.D. Pancost, C. Pierre, J.S. Sinninghe Damsté, J.C. Gottschal, J.D. van Elsas & L.J. Forney. (2006) Microbial community structure in three deep-sea carbonate crusts. Microbial Ecology 52: 451-462.
  12. Herfort, L., J.P. Boon, S. Schouten & J.S. Sinninghe Damsté. (2006) Application of the TEX86 temperature proxy to the southern North Sea. Org. Geochem., 37: 1715-1726.
  13. Herfort, L., S. Schouten, J.P. Boon, M. Woltering, M. Baas, J. Weijers & J.S. Sinninghe Damsté. (2006) Characterization of transport and deposition of terrestrial organic matter in the Southern North Sea using the BIT index. Limnol. Oceanogr. 51: 2196-2205.
  14. Hopmans, E.C., M.V.M. Kienhuis, J.E. Rattray, A. Jaeschke, S. Schouten & J.S. Sinninghe Damsté. (2006) Improved analysis of ladderane lipids in biomass and sediments using high-performance liquid chromatography/ atmospheric pressure chemical ionization tandem mass spectrometry. Rapid. Commun. Mass Spectrom. 20: 2099-2103.
  15. Huguet, C., E.C. Hopmans, W. Febo-Ayala, D.H. Thompson, J.S. Sinninghe Damsté & S. Schouten. (2006) An improved method to determine the absolute abundance of glycerol dibiphytanyl glycerol tetraether lipids. Org. Geochem. 37: 1036-1041.
  16. Huguet, C., J.E. Cartes, J.S. Sinninghe Damsté & S. Schouten. (2006) Marine crenarchaeotal membrane lipids in decapods: Implications for the TEX86 paleothermometer. Geochem. Geophys. Geosyst. 7: Q11010, doi:10.1029/2006GC00 1305.
  17. Huguet, C., J.-H. Kim, J.S. Sinninghe Damsté & S. Schouten. (2006) Reconstruction of sea surface temperature variations in the Arabian Sea over the last 23 kyr using organic proxies (TEX86 and UK37'). Paleoceanography 21: PA3003, 10.1029/2005PA001215.
  18. Kim, J.-H., S. Schouten, R. Buscail, W. Ludwig, J. Bonnin, J.S. Sinninghe Damsté & F. Bourrin. (2006) Origin and distribution of terrestrial organic matter in the NW Mediterranean (Gulf of Lions): application of the newly developed BIT index. Geochem. Geophys. Geosyst. 7, doi:10.1029/2006GC001306.
  19. Ménot, G., E. Bard, F. Rostek, J.W.H. Weijers, E.C. Hopmans, S. Schouten & J.S. Sinninghe Damsté. (2006) Early reactivation of European rivers during the last deglaciation. Science 313: 1623-1625.
  20. Menzel, D., E.C. Hopmans, S. Schouten & J.S. Sinninghe Damsté. (2006) Membrane tetraether lipids of planktonic Crenarchaeota in Pliocene sapropels of the eastern Mediterranean Sea. Palaeogeography Palaeoclimatology Palaeoecology 239: 1-15.
  21. Meyers, P.A., S.M. Bernasconi & A. Forster. (2006) Origins and accumulation of organic matter in expanded Albian to Santonian black shale sequences on the Demerara Rise, South American margin. Org. Geochem., 37: 1816-1830.
  22. Pagani, M., N. Pedentchouk, M. Huber, A. Sluijs, S. Schouten, H. Brinkhuis, J.S. Sinninghe Damsté, G.R. Dickens & the Expedition 302 Scientists. (2006) Arctic hydrology during global warming at the Palaeocene/Eocene thermal maximum. Nature 442: 671-675.
  23. Pancost, R.D., S. Pressley, J.M. Coleman, H.M. Talbot, S.P. Kelly, P. Farrimond, S. Schouten, L. Benning & B.W. Mountain. (2006) Composition and implications of diverse lipids in New Zealand Geothermal sinters. Geobiology 4: 71-92.
  24. Raghoebarsing, A.A., A. Pol, K.T. van de Pas-Schoonen, A.J.P. Smolders, K.F. Ettwig, W.I.C. Rijpstra, S. Schouten, J.S. Sinninghe Damsté, H.J.M. Op den Camp, M.S.M. Jetten & M. Strous. (2006) A microbial consortium couples anaerobic methane oxidation to denitrification. Nature 440: 918-921.
  25. Reneerkens, J., T. Piersma & J.S. Sinninghe Damsté. (2006) Discerning adaptive value of seasonal variation in preen waxes: comparative and experimental approaches. Acta Zool. Sinica 52: 272-275.
  26. Reysenbach, A-L., Y. Liu, A.B. Banta, T.J. Beveridge, J.D. Kirshtein, S. Schouten, M.K. Tivey, K. Von Damm & M.A. Voytek. (2006) A ubiquitous thermoacidophilic archaeon from deep-sea hydrothermal vents. Nature 442: 444-447.
  27. Rohling, E.J., E.C. Hopmans & J.S. Sinninghe Damsté. (2006) Water column dynamics during the last interglacial anoxic event in the Mediterranean (sapropel S5). Paleoceanography 21: PA2018 1-8.
  28. Schouten, S, J. Ossebaar, K. Schreiber, M.V.M. Kienhuis, G. Langer, A. Benthien & J. Bijma. (2006) The effect of temperature, salinity and growth rate on the stable hydrogen isotopic composition of long chain alkenones produced by Emiliania huxleyi and Gephyrocapsa oceanica. Biogeosciences 3: 113-119.
  29. Schubert, C.J., M.J.L. Coolen, L. Neretin, A. Schippers, B. Abbas, E. Durisch-Kaiser, B. Wehrli, E.C. Hopmans, J.S. Sinninghe Damsté, S. Wakeham & M.M.M. Kuypers. (2006) Aerobic and anaerobic methane oxidizers in the Black Sea water column. Environ. Microbiol. 8: 1844-1856.
  30. Sinninghe Damsté, J.S. & M.J.L. Coolen. (2006) Fossil DNA in Cretaceous Black Shales: Myth or Reality? Astrobiology 6: 299-302.
  31. Sluijs, A., S. Schouten, M. Pagani, M. Woltering, H. Brinkhuis, J.S. Sinninghe Damsté, G.R. Dickens, M. Huber, G.-J. Reichart, R. Stein, J. Matthiesen, L.J. Lourens, N. Pedentchouk, J. Backman, K. Moran & the Expedition 302 Scientists. (2006) Subtropical Arctic Ocean temperatures during the Palaeocene/Eocene thermal maximum. Nature 441: 610-612.
  32. Smittenberg, R.H., T.I. Eglinton, S. Schouten & J.S.Sininnghe Damsté. (2006) Ongoing buildup of refractory organic carbon in boreal soils during the Holocene. Science 314: 1283-1286.
  33. Stadnitskaia, A., M.K. Ivanov, V. Blinova, R. Kreulen & T.C.E. van Weering. (2006) Molecular and carbon isotopic variability of hydrocarbon gases from mud volcanoes in the Gulf of Cadiz, NE Atlantic. Mar. Petr. Geology 23: 281-296.
  34. Van Breugel, Y., M. Baas, S. Schouten, E. Mattioli & J. S. Sinninghe Damsté. (2006) Isorenieratane record in black shales from the Paris Basin, France: Constraints on recycling of respired CO2 as a mechanism for negative carbon isotope shifts during the Toarcian oceanic anoxic event. Paleoceanography 21, PA4220, doi:10.1029/2006PA001305.
  35. Van Breugel, Y., S. Schouten, M. Paetzel & J.S. Sinninghe Damsté. (2006) Seasonal variation in the stable carbon isotopic composition of algal lipids in a shallow anoxic fjord: evaluation of the effect of recycling of respired CO2 on the δ13C of organic matter. Am. J. Sci. 306: 367-387.
  36. Van Dongen, B.E., H.M. Talbot, S. Schouten, P.N. Pearson & R.D. Pancost. (2006) Well preserved Palaeogene and Cretaceous biomarkers from the Kilwa area, Tanzania. Org. Geochem. 37: 539-557.
  37. Van Dongen, B.E., S. Schouten & J.S. Sinninghe Damsté. (2006) Preservation of carbohydrates through sulfurization in a Jurassic euxinic shelf sea: Examination of the Blackstone Band TOC-cycle in the Kimmeridge Clay Formation, UK. Org. Geochem. 37: 1052-1073.
  38. Weijers, J.W.H., S. Schouten, E.C. Hopmans, J.A.J. Geenevasen, O.R.P. David, J. Coleman, R.D. Pancost & J.S. Sinninghe Damsté. (2006) Membrane lipids of mesophilic anaerobic bacteria thriving in peats have typical archaeal traits. Environ. Microbiol. 8: 648-657.
  39. Weijers, J.W.H., S. Schouten, O. Spaargaren & J.S. Sinninghe Damsté. (2006) Occurrence and distribution of tetraether membrane lipids in soils: Implications for the use of the TEX86 proxy and the BIT index. Org. Geochem. 37: 1680-1693.
  40. Wuchter, C., B. Abbas, M.J.L. Coolen, L. Herfort, J. van Bleijswijk, P. Timmers, M. Strous, E. Teira, G.J. Herndl, J.J. Middelburg, S. Schouten & J.S. Sinninghe Damsté. (2006a) Archaeal nitrification in the ocean. Proc. Nat. Ac. Sci. USA 103: 12317-12322.
  41. Wuchter, C., S. Schouten, S.G. Wakeham & J. S. Sinninghe Damsté. (2006b) Archaeal tetraether membrane lipid fluxes in the northeastern Pacific and the Arabian Sea: Implications for TEX86 paleothermometry. Paleoceanography 21: PA4208, doi:10.1029/ 2006PA001279.
  42. Zachos, J.C., S. Schouten, S. Bohaty, T. Quattlebaum, A. Sluijs, H. Brinkhuis, S. Gibbs & T. Bralower. (2006) Extreme warming of mid-latitude coastal ocean during the Paleocene-Eocene Thermal Maximum: Inferences from TEX86 and isotope data. Geology 34: 737-740.

Books

  1. Huckins, J.N., J.D. Petty & K. Booij. (2006) Monitors of organic chemicals in the environment: semipermeable membrane devices. Springer: New York, 223 pp.

Book chapters

  1. Coolen, M.J.L., G. Muyzer, S. Schouten, J.K. Volkman & J.S. Sinninghe Damsté. (2006) Sulfur and methane cycling during the Holocene in Ace Lake (Antarctica) revealed by lipid and DNA stratigraphy. In: Neretin, L.N. (Ed). Past and Present Water Column Anoxia, NATO Science Series IV. Earth and Environmental Sciences 64, Springer, Dordrecht, pp. 41-65.
  2. Schefuss, E., J.H.F. Jansen & J.S. Sinninghe Damsté. (2006) Tropical environmental changes at the mid-Pleistocene transition: insights from lipid biomarkers. In: Head, M.J. & P.L. Gibbard (Eds). Early-middle Pleistocene transitions: the land-ocean evidence. Geological Society of London, Special Publication, pp. 35-65.
  3. Sinninghe Damsté, J.S. & S. Schouten. (2006) Biological markers for anoxia in the photic zone of the water column. In: Volkman, J.K. (Ed). Marine Organic Matter: Biomarkers, Isotopes and DNA, pp. 127-165.
  4. Ten Hallers-Tjabbes, C.C., D. Gee & S. Guedes Vaz. (2006) Precaution as an invigorating context for scientific input in policy processes. In: Guimarães Pereira, A., S. Guedes Vaz & S. Tognetti (Eds). Interfaces between science and society, Chapter 2.4, Greenleaf Publishing, Sheffield, UK, pp: 18-135.

PhD theses

  1. Wuchter, C. (2006) Ecology and membrane lipid distribution of marine Crenarchaeota: Implications of TEX86 paleothermometry. Ph.D Thesis, University of Utrecht, 147 pp.
  2. Van Breugel, Y. (2006) Causes for negative carbon isotope anomalies in Mesozoic marine sediments: Constraints from modern and ancient anoxic settings. Ph.D Thesis, University of Utrecht, 128 pp.

 

naar boven

2005
  1. Banciu, H., D.Y. Sorokin, W.I.C. Rijpstra, J.S.Sinninghe Damsté, E.A. Galinski, S. Takalchi, G. Muyzer & J.G. Kuenen. (2005) Fatty acid, compatible solute and pigment composition of obligately chemolithoautotrophic alkaliphilic sulfur-oxidizing bacteria from soda lakes. FEMS Microbiol. Lett. 243: 181-187.
  2. Bartkow, M.E., K. Booij, K.E. Kennedy, J.F. Müller & D.W. Hawker. (2005) Passive sampling theory for atmospheric semivolatile organic compounds. Chemosphere 60: 170-176.
  3. Boom, A., J.S. Sinninghe Damsté & J.W. De Leeuw. (2005) Cutan, a common aliphatic biopolymer in cuticles of drought-adapted plants. Org. Geochem. 36: 595-601.
  4. De Jager, C. & G.J.M. Versteegh. (2005) Do planetary motions drive solar variability? Solar Physics 29: 175-179.
  5. Elvert, E., E.C. Hopmans, T. Treude, A. Boetius & E. Suess. (2005) Spatial variations of methanothrophic consortia at cold methane seeps: Implications from a high-resolution molecular and isotopic approach. Geobiology 3: 195-209.
  6. Heijs, S.K., J.S. Sinninghe Damsté & L.R. Forney. (2005) Characterization of a deep sea microbial mat collected from an active cold seep at the Milano mud volcano in the Eastern Mediterranean. FEMS Microbiol. Ecol. 54: 47-56.
  7. Hopmans, E.C., S. Schouten, W.I.C. Rijpstra & J.S. Sinninghe Damsté. (2005) Identification of carotenals in sediments. Org. Geochem. 36: 485-495.
  8. Klein Breteler, W.C.M., N. Schogt & S.W. Rampen. (2005) Effect of diatom nutrient limitation on copepod development: role of essential lipids. Mar. Ecol. Prog. Ser. 291: 125-133.
  9. Kim, J., L. Dupont, H. Behling & G.J.M. Versteegh. (2005) Impacts of rapid sea level rise on mangrove deposit erosion: application of taraxerol and Rhizophora records. J. Quaternary Sc. 20: 221-225.
  10. Kolonic, S., T. Wagner, A. Forster, J.S. Sinninghe Damsté, B. Walsworth-Bell, E. Erba, S. Turgeon, H.-J. Brumsack, E.H. Chellai, H. Tsikos, W. Kuhnt & M.M.M. Kuypers. (2005) Black shale deposition on the northwest African Shelf during the Cenomanian/Turonian oceanic anoxic event: Climate coupling and global organic carbon burial. Paleoceanography 20: PA1006 doi:10.1029/2003PA000950.
  11. Menzel, D., P.F. Van Bergen, H. Veld & J.S. Sinninghe Damsté. (2005) The molecular composition of kerogen in Pliocene Meditererranean sapropels and associated homogeneous, calcareous ooze. Org. Geochem. 36: 1037-1053.
  12. Naafs, D.F.W., K.G.J. Nierop, P.F. Van Bergen & J.W. De Leeuw. (2005) Changes in the molecular composition of ester-bound aliphatics with depth in an acid andic forest soil. Geoderma 127: 130-136.
  13. Pancost, R.D., C.L. Zhang, J. Tavacolia, H.M. Talbot, P. Farrimond, S. Schouten, J.S. Sinninghe Damsté & R. Sassen. (2005) Lipid biomarkers preserved in hydrate-associated authigenic carbonate rocks of the Gulf of Mexico. Palaeogeograph. Palaeoclimatol. Palaeoecol. 227, 48-62.
  14. Powers, L.A., T.C. Johnson, J.P. Werne, I.S. Castañeda, E. Hopmans, J.S. Sinninghe Damsté & S. Schouten. (2005) Large temperature variability in the southern African tropics since the Last Glacial Maximum. Geophys. Res. Lett. 32: L08706-10.1029/2004GL022014.
  15. Raghoebarsing, A.A., A.J.P. Smolders, M.C. Schmid, W.I.C. Rijpstra, M. Wolters-Arts, J. Derksen, M.S.M. Jetten, S. Schouten, J.S.Sinninghe Damsté, L.P.M. Lamers, J.G.M. Roelofs, H.J.M. Op Den Camp & M. Strous. (2005) Methanotrophic symbionts provide carbon for photosynthesis in peat bogs. Nature 436: 1153-1156.
  16. Schmid, M.C., B. Maas, A. Dapena, K. Van de Pas-Schoonen, J. Van de Vossenberg, B. Kartal, L. Van Niftrik, I. Schmidt, I. Cirpus, J.G. Kuenen, M. Wagner, J.S. Sinninghe Damsté, M. Kuypers, N.P. Revsbech, R. Mendez, M.S.M. Jetten & M. Strous. (2005) Biomarkers for in situ detection of anaerobic ammonium-oxidizing (anammox) bacteria. Appl. Environ. Microbiol. 71: 1677-1684.
  17. Schefuß, E., S. Schouten & R.R. Schneider. (2005) Climatic controls on central African hydrology during the past 20,000 years. Nature 437: 1003-1006.
  18. Schouten, S., S. Rampen, J.A.J. Geenevasen & J.S. Sinninghe Damsté. (2005) Structural identification of steryl alkyl ethers in marine sediments. Org. Geochem. 36: 1323-1333.
  19. Scourse, J., F. Marret, G.J.M. Versteegh, J.H.F. Jansen, E. Schefuß & J. Van Der Plicht. (2005) High resolution last deglaciation record from the Congo fan reveals significance of mangrove pollen and biomarkers as indicators of shelf transgression. Quaternary Research 64: 57-69.
  20. Sephton, M.A., C.V. Looy, H. Brinkhuis, P.B. Wignall, J.W. De Leeuw & H. Visscher. (2005) Catastrophic soil erosion during the end-Permian biotic crisis. Geology 33: 941-944.
  21. Sinninghe Damsté, J.S., M. Baas, J.A.J. Geenevasen & F. Kenig. (2005) Structural identification of sedimentary C21 and C22 highly branched isoprenoid alkanes. Org. Geochem. 36: 511-517.
  22. Sinninghe Damsté, J.S., W.I.C. Rijpstra, J.A.J. Geenevasen, M. Strous & M.S.M. Jetten. (2005) Ladderane and other membrane lipids of planktomycetes capable of anaerobic ammonium oxidation (anammox). FEBS J. 272, 4270-4283.
  23. Smittenberg, R.H., M. Baas, S. Schouten & J.S. Sinninghe Damsté. (2005) The demise of the alga Botryococcus braunii from a Norwegian fjord was due to early eutrophication. Holocene 15: 133-140.
  24. Smittenberg, R.H., M.Baas, M.J. Green, E.C. Hopmans, S. Schouten & J.S. Sinninghe Damsté. (2005) Pre- and post-industrial environmental changes as revealed by the biogeochemical sedimentary record of Drammensfjord, Norway. Mar. Geol. 214: 177-200.
  25. Stadnitskaia, A., G. Muyzer, B. Abbas, M.J.L. Coolen, E.C. Hopmans, M. Baas, T.C.E. Van Weering, M.K. Ivanov, E. Poludetkina & J.S. Sinninghe Damsté. (2005) Biomarker and 16S rDNA evidence for anaerobic oxidation of methane and related carbonate precipitation in deep-sea mud volcanoes of the Sorokin Trough, Black Sea. Mar. Geol. 217: 67-96.
  26. Van Breugel, Y., S. Schouten, M. Paetzel, J. Ossebaar & J.S. Sinninghe Damsté. (2005) Reconstruction of δ13C of chemocline CO2 (aq) in past oceans and lakes using the δ13C of fossil isorenieratene. Earth. Planet. Sc. Lett. 235: 421-434.
  27. Van Breugel, Y., S. Schouten, M. Paetzel, R. Nordeide & J.S. Sinninghe Damsté. (2005) The impact of recycling of organic carbon on the stable carbon isotopic composition of dissolved inorganic carbon in a stratified marine system (Kyllaren fjord, Norway). Org. Geochem. 36: 1163-1173.
  28. Van der Meer, M.T.J., S. Schouten, M.M. Bateson, U. Nübel, A. Wieland, M. Kühl, J.W. De Leeuw, J.S. Sinninghe Damsté & D.M. Ward. (2005) Diel variations in carbon metabolism by green nonsulfur-like bacteria in alkaline siliceous hot spring microbial mats from Yellowstone National Park. Appl. Environ. Microbiol. 71: 3978-3986.
  29. Van Drooge, B.L., J.O. Grimalt, K. Booij, L. Camarero & J. Catalan. (2005) Passive sampling of atmospheric organochlorine compounds by SPMDs in a remote high-mountain area. Atmos. Environ. 39: 5195-5204.
  30. Versteegh, G.J.M. (2005) Solar forcing of climate. 2: Evidence from the past. Space Science Reviews 120: 243-286.
  31. Werne, J. & J.S. Sinninghe Damsté. (2005) Mixed sources contribute to the molecular isotopic signature of methane-rich mud breccia sediments of Kazan mud volcano (eastern Mediterranean). Org. Geochem. 36: 13-27.
  32. Wuchter, C., S.Schouten, S.G. Wakeham & J.S. Sinninghe Damsté. (2005) Temporal and spatial variation in tetraether membrane lipids of marine Crenarchaeota in particulate organic matter: Implications for TEX86 paleothermometry. Paleoceanography 20: PA3013 doi: 10.1029/2004PA001110
  33. Zegers, B.N., A. Mets, R. Van Bommel, C. Minkenberg, T. Hamers, J.H. Kamstra, G.J. Pierce & J.P. Boon. (2005) Levels of hexabromo­cyclododecane (HBCD) in harbor porpoises and common dolphins from Western European seas, with evidence for stereo-isomer specific biotransformation by cytochrome P450. Environ. Sci. Technol. 39: 2095-2100.

Book chapters

  1. Jetten, M., M. Schmid, K. Van de Pas-Schoonen, J.S. Sinninghe Damsté & M. Strous. (2005) Anammox organisms: enrichment, cultivation, and environmental analysis. Methods Enzymol. 397: 34-57.
  2. Pancost, R.D., B.E. Van Dongen, A. Esser, H. Morgans-Bell, H.C. Jenkyns & J.S. Sinninghe Damsté. (2005) Variation in organic-matter composition and its impact on organic-carbon preservation in the Kimmeridge Clay Formation (Upper Jurassic, Dorset, southern England). In: The Deposition of Organic-Carbon Rich Sediments: Models, Mechanisms and Consequences (Ed., N.B. Harris), SEPM Spec. Publ. 82, pp 261-278.

 

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